View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14483_low_2 (Length: 636)
Name: NF14483_low_2
Description: NF14483
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14483_low_2 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 566; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 566; E-Value: 0
Query Start/End: Original strand, 15 - 636
Target Start/End: Complemental strand, 4771779 - 4771167
Alignment:
| Q |
15 |
catagggaagcagagaggaagagaagaaacagaattaatggtcatcttgctaaactccgtgcactagtgccctcctctccaaaggtataataatcttcct |
114 |
Q |
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| T |
4771779 |
catagggaagcagagaggaagagaagaaacagaattaatggtcatcttgctaaactccgtgcactagtgccctcctctccaaaggtataataatcttcct |
4771680 |
T |
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| Q |
115 |
ttctttttgtattttttatatgcatccaatcatattcattgtgtcacttcgttatattaatttttaaaatatctctatagtgaaatgtgattttttgata |
214 |
Q |
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| T |
4771679 |
ttctttttgtattttttatatgcatccaatcatatt---------actttgttatattaatttttaaaatatctctatagtgaaatgtgattttttgata |
4771589 |
T |
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| Q |
215 |
aacatgttttacaacgatgatgtttaccaattgaacctttttaccattttattttgattgtataattgttttaatattgttatctgattttagaaaggct |
314 |
Q |
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| T |
4771588 |
aacatgttttacaccgatggtgtttaccaattgaacctttttaccattttattttgattgtataattgttttaatattgttatctggttttagaaaggct |
4771489 |
T |
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| Q |
315 |
agcggtgaaacttacaataggtgctgagaagtaaggaattgcggatacacacttatgtccgagcatatcaaatgtctctgtaacattttatcatttgagc |
414 |
Q |
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| T |
4771488 |
agcggtgaaacttacaataggtgctgagaagtaaggaattgcggatacacacttatgtccgagcatatcaaatgtctctgtaacattttatcatttgagc |
4771389 |
T |
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| Q |
415 |
tctacttacatgacattgttttagcatgtttaaaataatcaacatatatatgattctgatttaattgctctgactgaaaaaatacatttacttaggtaac |
514 |
Q |
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| T |
4771388 |
tctacttacataacattgttttagcatgtttaaaataatcaacatatatatgattctgatttaattgctctgactgaaaaaatacatttacttaggtaac |
4771289 |
T |
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| Q |
515 |
atttagaaatttagaagctgaagcttgaagggtccttgactggtcaaatgtatatgggaaccgctaaagtcaactatataaggttgtggagttgcatttc |
614 |
Q |
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| T |
4771288 |
atttagaaatttagaagctgaagcttgaagggtccttgactggtcaaatgtatatgggaaccgctaaagtcaactatataaggttgtggagttgcatttc |
4771189 |
T |
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| Q |
615 |
aagattctgtagtataataaca |
636 |
Q |
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| T |
4771188 |
aagattctgaagtataataaca |
4771167 |
T |
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