View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14483_low_20 (Length: 393)
Name: NF14483_low_20
Description: NF14483
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14483_low_20 |
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Alignment Details
Target: chr8 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 18 - 388
Target Start/End: Complemental strand, 18220371 - 18220001
Alignment:
| Q |
18 |
caagatccttactggactcctccccctggttggaagcctggtgacagcatttcaccagaaaatgttacgagtcatgaactcagagagataaaggaggaaa |
117 |
Q |
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| T |
18220371 |
caagatccttactggactcctccccctggttggaagcctggtgacagcatttcaccagaaaatgttactagtcatgaactcagagagataaaggaggaaa |
18220272 |
T |
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| Q |
118 |
taattaagttgaaaaggtattgccaatttcannnnnnnnnnnnnnnnnatgatcgaatgaccagtgttattggttattctattgattgagttattgctta |
217 |
Q |
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| T |
18220271 |
taattaagttgaaaaggtattgccaatttcattttttattttatttttatgattgaatggccagtgttattggttattctattgattgagttattgctta |
18220172 |
T |
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| Q |
218 |
cttttcttgatctgcaaacagagaaatgagggagctcacatcaaaaagagaagaggaagcattggctcttgtgactactcctagttcttgtatgtcaagt |
317 |
Q |
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| T |
18220171 |
cttttcttgatctgcaaacagagaaatgagggagctcacatcaaaaagagaagaggaagcattggctcttgtgactactcctagttcttgtatgtcaagt |
18220072 |
T |
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| Q |
318 |
ttgaattttgaggaccatggttcccaggtttctaagcaggtgagaggaagcatagtagtaccagctcattg |
388 |
Q |
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| T |
18220071 |
ttgaattttgaggactatggttcccaggtttctaagcaggtgagaggaagcatagtagtaccagctcattg |
18220001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 89; Significance: 8e-43; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 18 - 262
Target Start/End: Complemental strand, 43012150 - 43011907
Alignment:
| Q |
18 |
caagatccttactggactcctccccctggttggaagcctggtgacagcatttcaccagaaaatgttacgagtcatgaactcagagag---ataaaggagg |
114 |
Q |
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| T |
43012150 |
caagacccctactggactcctccccctggctggaagcctggagacagcattgcaccagaatatgttactagtaatgaactcagagagatcataaaggagg |
43012051 |
T |
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| Q |
115 |
aaataattaagttgaaaaggtattgccaatttcannnnnnnnnnnnnnnnnatgatcgaatgaccagtgttattggttattctattga--ttgagttatt |
212 |
Q |
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||||||||||||||||| |||||||||| ||||| ||||| ||||||| |||||||||||||||||||||| |||| |||| |
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| T |
43012050 |
aaataattaagttgaaacggtattgccagtttca------ttttccattttatgattgaatgactggtgttattggttattctattgattttgatttatc |
43011957 |
T |
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| Q |
213 |
gcttacttttcttgatctgcaaacagagaaatgagggagctcacatcaaa |
262 |
Q |
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| T |
43011956 |
acatacttttcttgatctgcaaacagtgaaatgagggagctaaaatcaaa |
43011907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 338 - 388
Target Start/End: Complemental strand, 43011873 - 43011823
Alignment:
| Q |
338 |
ttcccaggtttctaagcaggtgagaggaagcatagtagtaccagctcattg |
388 |
Q |
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| T |
43011873 |
ttcccaggtttctaagcaggtgaggggaagcatagtagtcccagctcattg |
43011823 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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