View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14483_low_27 (Length: 365)
Name: NF14483_low_27
Description: NF14483
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14483_low_27 |
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Alignment Details
Target: chr8 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 10 - 305
Target Start/End: Original strand, 44218649 - 44218945
Alignment:
| Q |
10 |
ctacattcaactatttttgtaactccttttataatttaacatgttttagtgttaaatcattcttataacttcttctaaagctcatgctgaaaagcaatct |
109 |
Q |
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| T |
44218649 |
ctacattcaactatttttgtaactccttttataatttaacatgttttagtgttaaatcattcttataacttcttctaaagctcatgctcaaaagcaatct |
44218748 |
T |
|
| Q |
110 |
aatggtttgatttttatacaggtgcaaatcttaaaaaacttttgaaagcttctcattaacggttttgttatgaagattgtaaagatcactttttattctt |
209 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
44218749 |
aatggtttgatttttatacaggtgcaaattttaaaaaacttttgaaagcttctcattaacggttttgttatgaaaattgtaaagatcactttttattctt |
44218848 |
T |
|
| Q |
210 |
attcatgacctttcatttgcatattaggttttaatgaatgcatcc-ttttaaaactattcttagcctttcaattcaataataataattaaaaatcgt |
305 |
Q |
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| T |
44218849 |
attcatgacctttcatttgcatattaggttttaatgaatgcatcctttttaaaactattcttagcctttcaattcaataataataattaaaaatcgt |
44218945 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 110; Significance: 2e-55; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 2623344 - 2623565
Alignment:
| Q |
1 |
ttcctaatgctacattcaactattttt-gtaactccttttataatttaacatgttttagtgttaaatcattcttataacttcttctaaagctcatgctga |
99 |
Q |
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||||||||||||||||||| ||||||| ||||||| |||||||||||||||| ||||| |||||||||||||||||||||||| ||| | |||||| | |
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| T |
2623344 |
ttcctaatgctacattcaattattttttgtaactctttttataatttaacatattttaatgttaaatcattcttataacttct---aaaacccatgctaa |
2623440 |
T |
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| Q |
100 |
aaagcaatctaatggtttgatttttatacaggtgcaaatcttaaaaaacttttgaaagcttctcattaacggttttgttatgaagattgtaaagatcact |
199 |
Q |
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| T |
2623441 |
aaagcaatctaatggtttcgcatttatata--------tcagaagaaagttttgaaagcttctcattaacggttttgttatgaaaattgtgaagatcact |
2623532 |
T |
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| Q |
200 |
ttttattcttattcatgacctttcatttgcata |
232 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
2623533 |
ttttattcttattcatgacctttcatttgcata |
2623565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 148 - 295
Target Start/End: Original strand, 3245306 - 3245454
Alignment:
| Q |
148 |
cttttgaaagcttctcattaacggttttgttatgaagattgtaaagatcactttttattctt----attcatgacctttcatttgcatattaggttttaa |
243 |
Q |
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|||| ||||| | ||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| ||||||||||||||| |||||||| |
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| T |
3245306 |
ctttggaaagttactcattaacggttttgttatgaaaattgtaaagatcactttttattcttattcattcatgacttttcatttgcatatttggttttaa |
3245405 |
T |
|
| Q |
244 |
tgaatgcatccttttaaaactattcttagcctttcaattcaataataataat |
295 |
Q |
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| | || ||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
3245406 |
taagtgtatccttttaaaac---tcttagcctttcaattcaataataataat |
3245454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 148 - 295
Target Start/End: Original strand, 29458754 - 29458902
Alignment:
| Q |
148 |
cttttgaaagcttctcattaacggttttgttatgaagattgtaaagatcactttttattctt----attcatgacctttcatttgcatattaggttttaa |
243 |
Q |
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|||| ||||| | ||||||||||||||||||||||| ||||||||||| ||||||||||||| ||||||||| ||||||||| ||||| |||||||| |
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| T |
29458754 |
ctttggaaagttactcattaacggttttgttatgaaaattgtaaagataactttttattcttattcattcatgacttttcatttgtatatttggttttaa |
29458853 |
T |
|
| Q |
244 |
tgaatgcatccttttaaaactattcttagcctttcaattcaataataataat |
295 |
Q |
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| | || ||||||||||||| ||| ||||||||||||||||||||||||| |
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| T |
29458854 |
taagtgtatccttttaaaac---tctaagcctttcaattcaataataataat |
29458902 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 89; Significance: 8e-43; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 148 - 295
Target Start/End: Complemental strand, 8643374 - 8643226
Alignment:
| Q |
148 |
cttttgaaagcttctcattaacggttttgttatgaagattgtaaagatcactttttattcttattc----atgacctttcatttgcatattaggttttaa |
243 |
Q |
| |
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|||| ||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||| |||||||| |
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| T |
8643374 |
ctttggaaagtttctcattaacggttttgttatgaaaattgtaaagatcactttttattcttattcatgtatgacttttcatttgcatatttggttttaa |
8643275 |
T |
|
| Q |
244 |
tgaatgcatccttttaaaactattcttagcctttcaattcaataataataat |
295 |
Q |
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| | || ||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
8643274 |
taagtgtatccttttaaaac---tcttagcctttcaattcaataataataat |
8643226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 166 - 295
Target Start/End: Original strand, 5874512 - 5874642
Alignment:
| Q |
166 |
taacggttttgttatgaagattgtaaagatcactttttattc----ttattcatgacctttcatttgcatattaggttttaatgaatgcatccttttaaa |
261 |
Q |
| |
|
||||| || ||||||||| ||||||||||||||||||||||| |||||||||| ||||||||||||||| ||||||||| | || ||||||||||| |
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| T |
5874512 |
taacgattatgttatgaaaattgtaaagatcactttttattcttatttattcatgatttttcatttgcatatttggttttaataagtgtatccttttaaa |
5874611 |
T |
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| Q |
262 |
actattcttagcctttcaattcaataataataat |
295 |
Q |
| |
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|| ||||| ||||||| |||||| |||||||| |
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| T |
5874612 |
ac---tcttaacctttcacttcaatgataataat |
5874642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 5874362 - 5874474
Alignment:
| Q |
1 |
ttcctaatgctacattcaactatttttgtaactccttttataatttaacatgttttagtgttaaatcattcttataacttcttctaaagctcatgctgaa |
100 |
Q |
| |
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||||||| ||||||||||| | | || |||||||||||| |||||||| |||||| |||||| |||||||||||||||||||||| |||||||| || |
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| T |
5874362 |
ttcctaacgctacattcaa--actgttttaactccttttacaatttaac--gttttaatgttaattcattcttataacttcttctaatactcatgctaaa |
5874457 |
T |
|
| Q |
101 |
aagcaatctaatggttt |
117 |
Q |
| |
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| | | ||||||||||| |
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| T |
5874458 |
aggtagtctaatggttt |
5874474 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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