View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14483_low_3 (Length: 578)
Name: NF14483_low_3
Description: NF14483
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14483_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 464; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 19 - 567
Target Start/End: Complemental strand, 40631281 - 40630732
Alignment:
| Q |
19 |
aaaaagtgaatagcaacatgttcataacattgcagtttggagtaattagtgtatattctacagcattttatgaagcctgatcttaatgaaatttaatttt |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
40631281 |
aaaaagtgaatagcaacatgttcataacattgcagtttggagtaattagtgtatattctacagcattttatgaagccagatcttaatgaaatttaatttt |
40631182 |
T |
|
| Q |
119 |
tattgtttatatttgtgtcttaataataataccctggatgatgttgattgttttggcagtgaagtttaacttttgtacgattttgtggaaggnnnnnnnn |
218 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40631181 |
tattgtttatatttgtgccttaataataataccctggatgatgttgattgttttggcagtgaagtttaacttttgtacgattttgtggaaggaaaaaaaa |
40631082 |
T |
|
| Q |
219 |
nc--cagatttacatgataatttcttgagtttgagtttaactgttgtatgctttagtgaagaaattcagctttgcatgatactttctctagtttgagttt |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40631081 |
aaaacagatttacatgataatttcttgagtttgagtttaactgttgtatgctttagtgaagaaattcagctttgcatgatactttctctagtttgagttt |
40630982 |
T |
|
| Q |
317 |
aaatataacttatgtatgatttatagnnnnnnnntccaactgtaaacatttcttgattttgaattttagtttaagttttgtatgatttaaagaataccat |
416 |
Q |
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| T |
40630981 |
aaatataacttatgtatgatttatagaaaaaaa-tccaactgtaaacatttcttgattttgaattttagtttaagttttgtatgatttaaagaataccat |
40630883 |
T |
|
| Q |
417 |
aaaatgatctacagcggaaatttgatgaatacctttgcatatgtgaaccgaaaataatagaatgaggacgttgaatagtgtagttggttcacatttgttg |
516 |
Q |
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| T |
40630882 |
aaaatgatctacagcggtaatttgatgaatacctttgcatatgtgaaccgaaaataatagaacgaggacgttgaatagtgtagttggttcacatttgttg |
40630783 |
T |
|
| Q |
517 |
tttctctttaatcatcctctctcttttaatagcttctccaataatccctat |
567 |
Q |
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| T |
40630782 |
tttctctttaatcatcctctctcttttaatagcttctccaataatccctat |
40630732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 366 - 405
Target Start/End: Complemental strand, 6475229 - 6475190
Alignment:
| Q |
366 |
ttcttgattttgaattttagtttaagttttgtatgattta |
405 |
Q |
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| T |
6475229 |
ttcttgagtttgaatttcagtttaagttttgtatgattta |
6475190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 401 - 463
Target Start/End: Complemental strand, 40631364 - 40631302
Alignment:
| Q |
401 |
atttaaagaataccataaaatgatctacagcggaaatttgatgaatacctttgcatatgtgaa |
463 |
Q |
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| T |
40631364 |
atttaatgaataccataaaatgatgtataacaaaaatttgatgaatacctatgaatatgtgaa |
40631302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 412 - 463
Target Start/End: Complemental strand, 21443622 - 21443571
Alignment:
| Q |
412 |
accataaaatgatctacagcggaaatttgatgaatacctttgcatatgtgaa |
463 |
Q |
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| T |
21443622 |
accataaaatgatgtatagcagaaatttgatgaatacctttgcatatgtgaa |
21443571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 395 - 441
Target Start/End: Complemental strand, 21444016 - 21443970
Alignment:
| Q |
395 |
tgtatgatttaaagaataccataaaatgatctacagcggaaatttga |
441 |
Q |
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| T |
21444016 |
tgtatgatttaatgaataccataaaatgatgtatagcgggaatttga |
21443970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 105 - 180
Target Start/End: Complemental strand, 33233429 - 33233356
Alignment:
| Q |
105 |
tgaaatttaatttttattgtttatatttgtgtcttaataataataccctggatgatgtt-gattgttttggcagtga |
180 |
Q |
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||||||||| |||||||||||||||||||||||||||| |||||||| ||||| ||| || |||||||||||||| |
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| T |
33233429 |
tgaaattta-tttttattgtttatatttgtgtcttaat--taatacccgggatggcgttggagtgttttggcagtga |
33233356 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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