View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14483_low_33 (Length: 338)
Name: NF14483_low_33
Description: NF14483
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14483_low_33 |
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Alignment Details
Target: chr5 (Bit Score: 61; Significance: 4e-26; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 22 - 94
Target Start/End: Original strand, 32308922 - 32308994
Alignment:
| Q |
22 |
ttaatatatatgtaaaaaacgttaccttaatttggtatgaatataatgagtttgttgctgtcattatggatac |
94 |
Q |
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| T |
32308922 |
ttaatatatatgtaaaaatcgttacctttatttggcatgaatataatgagtttgttgctgtcattatggatac |
32308994 |
T |
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Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 22 - 178
Target Start/End: Complemental strand, 32314724 - 32314551
Alignment:
| Q |
22 |
ttaatatatatgtaaaaaa-cgttaccttaatttggtatgaatataatgagtttgttgctgtcattatggatacatcaaaaa----------------tt |
104 |
Q |
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| T |
32314724 |
ttaatatatatgcaaaaaaacgttaccttaatttggcatgaatataatgagtttgttgctgtcattatggataggacaaaaaatgctacacctccagcct |
32314625 |
T |
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| Q |
105 |
ccttcacatatttgcaatattttcttttaaccatcttaatcttaatatcccagaaaata-attgtaaacataaga |
178 |
Q |
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|||||||| | || ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |
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| T |
32314624 |
ccttcaca-aattccaatattttcttttaaccatcttaatcttaatatctaagaaaatatattgtaaacataaga |
32314551 |
T |
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