View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14483_low_45 (Length: 278)

Name: NF14483_low_45
Description: NF14483
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14483_low_45
NF14483_low_45
[»] chr7 (1 HSPs)
chr7 (1-260)||(47041734-47041993)
[»] chr8 (3 HSPs)
chr8 (1-38)||(8060784-8060821)
chr8 (1-40)||(22505658-22505697)
chr8 (1-35)||(4560618-4560652)
[»] chr5 (3 HSPs)
chr5 (1-36)||(35299881-35299916)
chr5 (7-36)||(7705917-7705946)
chr5 (1-37)||(36796625-36796661)
[»] chr3 (1 HSPs)
chr3 (7-36)||(46478789-46478818)
[»] chr1 (2 HSPs)
chr1 (1-38)||(6292608-6292645)
chr1 (4-36)||(28389208-28389240)
[»] chr4 (1 HSPs)
chr4 (1-45)||(27043740-27043784)
[»] chr2 (1 HSPs)
chr2 (4-36)||(750853-750885)


Alignment Details
Target: chr7 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 260
Target Start/End: Complemental strand, 47041993 - 47041734
Alignment:
Q  1 tgtcaatagatatgctcaaataagtcaatccaaacaaatccttaacatatagtggaatgaatgcagtaaatttgagtccaggtgcaagtagtaataccaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47041993 tgtcaatagatatgctcaaataagtcaatccaaacaaatccttaacatatagtggaatgaatgcagtaaatttgagtccaggtgcaagtagtaataccaa 47041894  T
Q  101 atccagagtccacagaaacagcaatcccaaagatatataaaagatttgttgttgggaaattccaaagacattccaagcagcaacccctccaacaatagca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  47041893 atccagagtccacagaaacagcaatcccaaagatatataaaagatttgttgttgggaaattccaaagacattccaagcagcaaaccctccaacaatagca 47041794  T
Q  201 gcaatcaacaaatttctctcaattgaaccaagagttgtatccacaggtgatagaagagac 260  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47041793 gcaatcaacaaatttctctcaattgaaccaagagttgtatccacaggtgatagaagagac 47041734  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 8060784 - 8060821
Alignment:
Q  1 tgtcaatagatatgctcaaataagtcaatccaaacaaa 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  8060784 tgtcaatagatatgctcaaataagtcaatccaaacaaa 8060821  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 22505658 - 22505697
Alignment:
Q  1 tgtcaatagatatgctcaaataagtcaatccaaacaaatc 40  Q
    |||||||||||| ||||||||||||||||| |||||||||    
T  22505658 tgtcaatagataagctcaaataagtcaatctaaacaaatc 22505697  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 4560618 - 4560652
Alignment:
Q  1 tgtcaatagatatgctcaaataagtcaatccaaac 35  Q
    |||||||||||| ||||||||||||||||||||||    
T  4560618 tgtcaatagataagctcaaataagtcaatccaaac 4560652  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 35299881 - 35299916
Alignment:
Q  1 tgtcaatagatatgctcaaataagtcaatccaaaca 36  Q
    |||||||||||| |||||||||||||||||||||||    
T  35299881 tgtcaatagataagctcaaataagtcaatccaaaca 35299916  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 7 - 36
Target Start/End: Complemental strand, 7705946 - 7705917
Alignment:
Q  7 tagatatgctcaaataagtcaatccaaaca 36  Q
    ||||||||||||||||||||||||||||||    
T  7705946 tagatatgctcaaataagtcaatccaaaca 7705917  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 36796661 - 36796625
Alignment:
Q  1 tgtcaatagatatgctcaaataagtcaatccaaacaa 37  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  36796661 tgtcattagataagctcaaataagtcaatccaaacaa 36796625  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 7 - 36
Target Start/End: Original strand, 46478789 - 46478818
Alignment:
Q  7 tagatatgctcaaataagtcaatccaaaca 36  Q
    ||||||||||||||||||||||||||||||    
T  46478789 tagatatgctcaaataagtcaatccaaaca 46478818  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 6292608 - 6292645
Alignment:
Q  1 tgtcaatagatatgctcaaataagtcaatccaaacaaa 38  Q
    ||||| |||||| |||||||||||||||||||||||||    
T  6292608 tgtcagtagataagctcaaataagtcaatccaaacaaa 6292645  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 36
Target Start/End: Complemental strand, 28389240 - 28389208
Alignment:
Q  4 caatagatatgctcaaataagtcaatccaaaca 36  Q
    |||||||||||||||||||| ||||||||||||    
T  28389240 caatagatatgctcaaataattcaatccaaaca 28389208  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 27043784 - 27043740
Alignment:
Q  1 tgtcaatagatatgctcaaataagtcaatccaaacaaatccttaa 45  Q
    ||||| |||||| ||||||||||||||||||||||| | ||||||    
T  27043784 tgtcagtagataagctcaaataagtcaatccaaacagacccttaa 27043740  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 36
Target Start/End: Original strand, 750853 - 750885
Alignment:
Q  4 caatagatatgctcaaataagtcaatccaaaca 36  Q
    ||||||||| |||||||||||||||||||||||    
T  750853 caatagataagctcaaataagtcaatccaaaca 750885  T

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