View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14483_low_49 (Length: 255)
Name: NF14483_low_49
Description: NF14483
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14483_low_49 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 6 - 255
Target Start/End: Complemental strand, 2521744 - 2521495
Alignment:
| Q |
6 |
agtgagatgaaaacctaaagttataccatatcgcagcaatggatagtgcttctgattgaccttgagatccatgtgaaacatccattccaataaccaatgt |
105 |
Q |
| |
|
||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2521744 |
agtgacatgaaaacctaaagttataccataccgcagcaatggatagtgcttctgattgaccttgagatccatgtgaaacatccattccaataaccaatgt |
2521645 |
T |
|
| Q |
106 |
aggtatttttgaaaacagtggtatcgaatgctcaaattcagttaacaaaaaggaattcatcccaccaagctgcatgaaataagttaagcgaaagtaaaat |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2521644 |
aggtatttttgaaaacagtggtatcgaatgcttaaattcagttaacaaaaaggaattcatcccaccaagctgcatgaaataagttaagcgaaagtaaaat |
2521545 |
T |
|
| Q |
206 |
gtgagtagtttccaaaataatggaatcataggagacatattatatgactc |
255 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
2521544 |
gtgagtagtttccagaataatggaatcataggagacatattatatgactc |
2521495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University