View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14483_low_5 (Length: 542)
Name: NF14483_low_5
Description: NF14483
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14483_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 479; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 14 - 527
Target Start/End: Complemental strand, 4075533 - 4075019
Alignment:
| Q |
14 |
attattctgatattatgttagttaaaagactaaattgctgagttggaatttttgcagagttactctccttcccatgagcatgtagcccctcatgagagct |
113 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4075533 |
attactctgatattatgttagttaaaagactaaattgctgagttggaatttttgcagagttactctccttcccatgagcatgtagcccctcatgagagct |
4075434 |
T |
|
| Q |
114 |
ggcagatgaagcagttaggtaattatccaggacaagagaatgcagaatgaaactttattggtggaaggtttttctagaatttgtcttctgatgtgattct |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4075433 |
ggcagatgaagcagttaggtaattatccaggacaagagaatgcagaatgaaactttattggtggaaggtttttctagaatttgtcttctgatgtgattct |
4075334 |
T |
|
| Q |
214 |
ccataacttgaaatgtatacaagaattgctggagatggggccaaatgttgttttgttactatgtgttgatttttatgaagtgacggtatatgttcttcgc |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
4075333 |
ccataacttgaaatgtatacaagaattgctggagatggggccaaatgttgttttgttactatgtgttgatttttatgaagtgacggtatatgtgcttcgc |
4075234 |
T |
|
| Q |
314 |
tgtttttgaatcatttcatttattggttaattgtgacactgtaagacagtcaaatttggttgttacttaccacagttg-aagtgaaaaggtatatggaaa |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| |
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| T |
4075233 |
tgtttttgaatcatttcatttattggttaattgtgacactgtaagacagtcaaatttggttgttacttaccacagttgaaagtgaaaaagtatatggaaa |
4075134 |
T |
|
| Q |
413 |
taaaatgagatgacaattcttgatgaatcgagaaattttaagttgtggggacaatactcgtatagtttgtaaagtacgagtttatctgacttttaatcgg |
512 |
Q |
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|||||||||||||||| || ||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| |
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| T |
4075133 |
taaaatgagatgacaaatcgtgatgaatcgagaaattttaagttgtggggacaatacacgtatagtttgtaaagcacgagtttatctgacttttaatcgg |
4075034 |
T |
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| Q |
513 |
gcaaattgctctaat |
527 |
Q |
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||||||||||||||| |
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| T |
4075033 |
gcaaattgctctaat |
4075019 |
T |
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