View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14483_low_55 (Length: 243)
Name: NF14483_low_55
Description: NF14483
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14483_low_55 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 15219018 - 15219102
Alignment:
| Q |
1 |
agtgtaagaaagagagtgttattatcattcgtcttaaatgaaacaaaaggattttgtggttgtttgtgaaatgaatggtcacata |
85 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
15219018 |
agtgtaagaaagagagtgttattatcattcgtcttatataaaacaaaaggattttgtggttgtttgtgaaatgaatagtcacata |
15219102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 163 - 224
Target Start/End: Original strand, 15219181 - 15219242
Alignment:
| Q |
163 |
tatttctcatttatttttctcccttatgtgaatatgctcaaacaattagaaaatatattgtc |
224 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
15219181 |
tatttctcatttatttttctccattatgtgaatatgctcggacaattagaaaatatattgtc |
15219242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University