View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14483_low_6 (Length: 522)
Name: NF14483_low_6
Description: NF14483
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14483_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 254; Significance: 1e-141; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 51 - 308
Target Start/End: Original strand, 27573943 - 27574200
Alignment:
| Q |
51 |
taggaggttaaggttattgtgttcaagtcactttgagtggttaaatttgggaggaggcagaatgttgcttgttcagtctaagtttcggaaagattatttg |
150 |
Q |
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| T |
27573943 |
taggaggttaaggttattgtgttcaagtcactttgagtggttaaatttgggaggaggcagaatgttgcttgttcagtctaagtttcggaaagattatttg |
27574042 |
T |
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| Q |
151 |
agaagctggttcatcaactcttctcatcattcatggcttcttggtggtactactcaatgtctcgaactgtcactctgctctaagacttcccaaactacac |
250 |
Q |
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| T |
27574043 |
agaagctggttcatcaactcttctgatcattcatggcttcttggtggtactactcaatgtctcgaactgtcactctgctctaagacttcccaaactacac |
27574142 |
T |
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| Q |
251 |
atgttgccaattagaatgataaaaatgttttcagtgtcacctctcattgccccaaaaa |
308 |
Q |
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| T |
27574143 |
atgttgccaattagaatgataaaaatgttttcagtgtcacctctcattgccccaaaaa |
27574200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 305 - 494
Target Start/End: Original strand, 27574238 - 27574430
Alignment:
| Q |
305 |
aaaagaaagatgaaggggaacgttttagagaccacaataacaaatataagcttcaaattctataagagtaatgatatatggatcaattacatcaggt--a |
402 |
Q |
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| T |
27574238 |
aaaagaaagatgaaggggaacgtgttagagaccacaataacaaatataagcttcaaattctataagaataatgatatatggatcaattacatcaggtaga |
27574337 |
T |
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| Q |
403 |
gaaaccaagatactagcaaaacaaa-ggctagaagcctaaccacgtcaactttagcaaaaaagcaatcacatattagattaagactattactt |
494 |
Q |
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| T |
27574338 |
gaaaccaagatactagcaaaacaaagggctagaagcctaaccacgttaactttagcaaaaaagcaatcacacgttagattaagactattactt |
27574430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 15 - 51
Target Start/End: Original strand, 27573815 - 27573851
Alignment:
| Q |
15 |
aatttgatctatgctttggctaaggacaaaatctaat |
51 |
Q |
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| T |
27573815 |
aatttgatctatgctttggctaaggacaaaatctaat |
27573851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 327 - 369
Target Start/End: Original strand, 39766394 - 39766436
Alignment:
| Q |
327 |
ttttagagaccacaataacaaatataagcttcaaattctataa |
369 |
Q |
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| T |
39766394 |
ttttagagaccacaataacatataaaagtttcaaattctataa |
39766436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 258 - 307
Target Start/End: Complemental strand, 38405815 - 38405764
Alignment:
| Q |
258 |
caattagaatgataaaaatgtttt--cagtgtcacctctcattgccccaaaa |
307 |
Q |
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||||||| | |||||||||||||| ||||||||| |||||||||||||||| |
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| T |
38405815 |
caattagcaagataaaaatgttttttcagtgtcacatctcattgccccaaaa |
38405764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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