View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14483_low_63 (Length: 208)
Name: NF14483_low_63
Description: NF14483
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14483_low_63 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 184; Significance: 1e-100; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 17 - 208
Target Start/End: Complemental strand, 14378063 - 14377872
Alignment:
| Q |
17 |
tctcactaactataaatcatcaacttcgacattagaaaagtaagtagaaatactatataatccatctgaacttaaatatagcaatactatatatcagttg |
116 |
Q |
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| T |
14378063 |
tctcactaactataaatcatcaacttccacattagaaaagtaagtagaaatactatataattcatctgaacttaaatatagcaatactatatatcagttg |
14377964 |
T |
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| Q |
117 |
gtctaaatttactatatactccctttggacgtatagatgtacccttttgcttatatttaagtctgcaaggagtatttatgttcaataaaatt |
208 |
Q |
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| T |
14377963 |
gtctaaatttactatatactccctttggacgtatagatgtacccttttgcttatatttaagtctgcaaggagtatttatgttcaataaaatt |
14377872 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 17 - 149
Target Start/End: Original strand, 14237163 - 14237301
Alignment:
| Q |
17 |
tctcactaactataaatcatcaacttcgacattagaaaa------gtaagtagaaatactatataatccatctgaacttaaatatagcaatactatatat |
110 |
Q |
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| T |
14237163 |
tctcactaactataaatcatcaacttccacattagcaatatgttcgtgagtagaactactatataatccatatgaacttgaatatagcaataatgtacat |
14237262 |
T |
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| Q |
111 |
cagttggtctaaatttactatatactccctttggacgta |
149 |
Q |
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| T |
14237263 |
cagttggtctaaatttactacatactccctctggacgta |
14237301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 149 - 208
Target Start/End: Original strand, 14237328 - 14237387
Alignment:
| Q |
149 |
atagatgtacccttttgcttatatttaagtctgcaaggagtatttatgttcaataaaatt |
208 |
Q |
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| T |
14237328 |
atagatgtacctttttgcttatattaaagtcttcaaggagtatttatgttcaataaaatt |
14237387 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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