View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14483_low_8 (Length: 510)
Name: NF14483_low_8
Description: NF14483
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14483_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 461; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 19 - 498
Target Start/End: Original strand, 31704606 - 31705083
Alignment:
| Q |
19 |
ggaatcccatttgggacgaagagtttgagttccgtttgacagttccggagctcgcgttgctccggatcgaagtaaaggataaagatcagacaaaagatga |
118 |
Q |
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| T |
31704606 |
ggaatcccatttgggacgaagagtttgagttccgtttgacagttccggagctcgcgttgctccggatcgaagtaaaggataaagatcagacaaaagatga |
31704705 |
T |
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| Q |
119 |
ttttgctggacagacttgtttgccagtatcagagctaagacatggatttcggtctgttgctttgtgtgacagaaagggaaagaaatataactctgtgaag |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
31704706 |
ttttgctggacagacttgtttgccagtatcagagctaagacatggatttcggtctgttgctttgtgtgacagaaagggaaagaaatataactctgtcaag |
31704805 |
T |
|
| Q |
219 |
cttttacttggattccaactagaaactttgaaaatgttgtaatgtggttaatctaagtatctatattataagatctttttgtttaggagcataatgatat |
318 |
Q |
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| T |
31704806 |
cttttacttggattccaactagaaactttgaaaatgttgtaatatggttaatctaagtatctatattataagatctttttgtttaggagcataatgatat |
31704905 |
T |
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| Q |
319 |
ttatctttatatgttgagctgcttgaaaatagtatttgtgggctttcattactgtgttaatgttatcatttctgctcaatctatatctatatattaataa |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31704906 |
ttatctttatatgttgagctgcttgaaaatagtatttgtgggctttcattactgtgttaatgttatcatttctgctcaatctatatctatatattaataa |
31705005 |
T |
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| Q |
419 |
caaaagtacaaaacaactttaattaagaactaccaattttgtccataaaacccaactcaattaacaaaaataccgatatt |
498 |
Q |
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| T |
31705006 |
caaaagtacaaaacaactttaattaagaactaccaattttgtccataaaacccaactcaattaac--aaataccgatatt |
31705083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 28 - 247
Target Start/End: Original strand, 31654247 - 31654466
Alignment:
| Q |
28 |
tttgggacgaagagtttgagttccgtttgacagttccggagctcgcgttgctccggatcgaagtaaaggataaagatcagacaaaagatgattttgctgg |
127 |
Q |
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|||||||||||||||| || |||| ||||| ||||| ||||| || ||||||||||||||||| || ||||||||| || | ||| ||||||||||| |
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| T |
31654247 |
tttgggacgaagagttcgaattccaattgactgttccagagcttgcattgctccggatcgaagtgaaagataaagataagggatcagacgattttgctgg |
31654346 |
T |
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| Q |
128 |
acagacttgtttgccagtatcagagctaagacatggatttcggtctgttgctttgtgtgacagaaagggaaagaaatataactctgtgaagcttttactt |
227 |
Q |
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| T |
31654347 |
acaaacttgtttgcctgtatcagagctaagacatggatttcggtctgttgctttgtgtgacagaaagggaaagaaatataactctgtcaagcttttactt |
31654446 |
T |
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| Q |
228 |
ggattccaactagaaacttt |
247 |
Q |
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|||||||| || |||||||| |
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| T |
31654447 |
ggattccaccttgaaacttt |
31654466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 156 - 208
Target Start/End: Original strand, 31717917 - 31717969
Alignment:
| Q |
156 |
agacatggatttcggtctgttgctttgtgtgacagaaagggaaagaaatataa |
208 |
Q |
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| T |
31717917 |
agacaaggattttggtttgttgctttgtgcgacagaaagggaaagaaatataa |
31717969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 22 - 104
Target Start/End: Original strand, 31717821 - 31717903
Alignment:
| Q |
22 |
atcccatttgggacgaagagtttgagttccgtttgacagttccggagctcgcgttgctccggatcgaagtaaaggataaagat |
104 |
Q |
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| T |
31717821 |
atcctatttgggacgaagtgttcaaatcccgtttgagtgatccggagctcgctttgctccggatcgcagtgaaggataaagat |
31717903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 93; Significance: 5e-45; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 27 - 227
Target Start/End: Complemental strand, 44901421 - 44901221
Alignment:
| Q |
27 |
atttgggacgaagagtttgagttccgtttgacagttccggagctcgcgttgctccggatcgaagtaaaggataaagatcagacaaaagatgattttgctg |
126 |
Q |
| |
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||||||||||||||||||| ||||| || || |||| ||||| || ||||||| ||||||| | |||||||||||| ||| | |||||||||| | | |
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| T |
44901421 |
atttgggacgaagagtttgtattccgattaaccattccagagcttgctttgctccagatcgaactgaaggataaagatatgacgacagatgatttttccg |
44901322 |
T |
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| Q |
127 |
gacagacttgtttgccagtatcagagctaagacatggatttcggtctgttgctttgtgtgacagaaagggaaagaaatataactctgtgaagcttttact |
226 |
Q |
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| T |
44901321 |
gacagacctgtttgcctgtatcagagctaagacatggatttcggtttgttcgtttgtgtgactgaaaggggaagaaatttaactctgttaagcttttact |
44901222 |
T |
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| Q |
227 |
t |
227 |
Q |
| |
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| |
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| T |
44901221 |
t |
44901221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 110 - 167
Target Start/End: Original strand, 35510755 - 35510812
Alignment:
| Q |
110 |
aaaagatgattttgctggacagacttgtttgccagtatcagagctaagacatggattt |
167 |
Q |
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| T |
35510755 |
aaaagatgactttgctggacaaacatgtttgccagtttcagagataaaacttggattt |
35510812 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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