View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14483_low_9 (Length: 487)
Name: NF14483_low_9
Description: NF14483
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14483_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 285; Significance: 1e-159; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 15 - 307
Target Start/End: Complemental strand, 28877731 - 28877439
Alignment:
| Q |
15 |
agcacagatctcaaagaataatgcagcacaagtaataaagtattcacattcacattgtttgaaaatgaaaacctgttgcattgtgaacattcagaattca |
114 |
Q |
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| T |
28877731 |
agcacagatctcaaagaataatgcagcacaagtaataaagtattcatattcacattgtttgaaaatgaaaacttgttgcattgtgaacattcagaattca |
28877632 |
T |
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| Q |
115 |
gaatatagaaccattaaataaccctaatcccaatgcattttaaacctaatttttctaaaaaccattgagaaaaattccattttcttcattctttgtatca |
214 |
Q |
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| T |
28877631 |
gaatatagaaccattaaataaccctaatcccaatgcattttaaacctaatttttctaaaaaccattgagaaaaattccattttcttcattctttgtatca |
28877532 |
T |
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| Q |
215 |
aattttgagaactcaacagagaataataccatacctatctgaaatcccagaaaccaatacaagaataatgagaaaaccatgaagcaaaaattg |
307 |
Q |
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| T |
28877531 |
aattttgagaactcaacagagaataataccatacctatctgaaatcccagaaaccaatacaagaataatgagaaaaccatgaagcaaaaattg |
28877439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 457 - 487
Target Start/End: Complemental strand, 28877291 - 28877261
Alignment:
| Q |
457 |
tacattctactcaataatcttaatccatcat |
487 |
Q |
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| T |
28877291 |
tacattctactcaataatcttaatccatcat |
28877261 |
T |
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