View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14484_high_1 (Length: 1200)
Name: NF14484_high_1
Description: NF14484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14484_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 819; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 819; E-Value: 0
Query Start/End: Original strand, 297 - 1184
Target Start/End: Original strand, 19765149 - 19766046
Alignment:
| Q |
297 |
ctaaattggatcataatcacattatgtattgttgattgtgtctgaaattggtctcttgaatacgatttctttggtttgtcttatatatcatagaataaaa |
396 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19765149 |
ctaaattggatcataatcacattatgtattgttgattgtgtctgaaattggtctcttgaatacgatttctttggtttgtcttatatatcatagaataaaa |
19765248 |
T |
|
| Q |
397 |
gcatactgtgctcacctgctcctgaaaccttatggtctgtcccttatatgcttatgtaaagtg----------agtagattaacttacctgaataagtat |
486 |
Q |
| |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
19765249 |
gcatactgtgctcacctgctcctgaaaccttttggtctgtcccttatatgcttatgtaaagtgccactctctgagtagattaacttacctgaataagtat |
19765348 |
T |
|
| Q |
487 |
ttaattatatgaataatgctcactttgtttgtaaaaacatatttcaggtgaatttccccgaacatgccgccattcctacatttgttaacttaacttacct |
586 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
19765349 |
ttaattatatgaataatgctcactttgtttgtaaaaacatatttcaggtgaatttccccgaacatgccgccattcctacatttgataacttaacttacct |
19765448 |
T |
|
| Q |
587 |
gaaaataaattccttgaactaccgttggcgttttttagttgaagtactaaagcactgccctaagcttgaaaaactaatccttaatgaggtttgttaaata |
686 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
19765449 |
gaaaataaattccttgaactaccgttggcattttttagttgaagtactaaagcactgccttaagcttgaaaaactaatccttaatgaggtttgttaaata |
19765548 |
T |
|
| Q |
687 |
tcatattattacaaatttatcttttcacaacacatctttagcttttgttttaatttcatacacattactaacaggctggtggccatggtgcaacaagcga |
786 |
Q |
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| T |
19765549 |
tcatattattacaaatttatcttttcataacacatctttagcttttgatttaatttcatacgcattactaacaggctggtggccatggtgcaacaagcga |
19765648 |
T |
|
| Q |
787 |
aacatggagtagaaaagatgataaggaacaatgggtcgaccctaaagttgtcccggaatgtctgtcatcacatttaaaaagttgtgatctttacacattc |
886 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
19765649 |
aacatggagtagaaaagatgataaggaacaatgggtcgaccctaaagttgtcccggaatgtctgtcatcacatttaaaaagttgcgatctttacacattc |
19765748 |
T |
|
| Q |
887 |
ttaggccttgaaggagagcttcatctagcatgctacatattgaagaatgcaagagttttggaagagatgatgatatggaatgttggacacactgaagtaa |
986 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19765749 |
ttaggccttgaaggagagcttcatctagcatgctacatattgaagaatgcaagagttttggaagagatgatgatatggaatgttggacacactgaagtaa |
19765848 |
T |
|
| Q |
987 |
aaaggtcaatattctcatgcctgaaggcctctgcaaaatgccgagttattttgaagcatgtatgttattctatccttaatttgtgctaggttcatttgtt |
1086 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19765849 |
aaaggtcgatattctcatgcctgaaggcctctgcaaaatgccgagttattttgaagcatgtatgttattctatccttaatttgtgctaggttcatttgtt |
19765948 |
T |
|
| Q |
1087 |
gtctcaactattcttaatttataacatatttctcctgtttacatgttatacataatcattgatcactgtaattttggagaagggataatgctgtctct |
1184 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
19765949 |
gtctcaactattcttaatttataacatatttctccagtttacatgttatacataatcattgatcactgtaattttggagaagggataatgttgtctct |
19766046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 173; E-Value: 2e-92
Query Start/End: Original strand, 12 - 216
Target Start/End: Original strand, 19764865 - 19765068
Alignment:
| Q |
12 |
gattattcttcataaaacaataatgggttcttgagaaaacttgtaaaaatcaannnnnnnnnatattggggtgtttctgtttaatgcatttttattcaaa |
111 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
19764865 |
gattattcttcataaaacaataatgggttcttgagaaaacttgtaaaaatcaatttttttt-atattggggtgtttctgtttaatgcatttttattcaaa |
19764963 |
T |
|
| Q |
112 |
aacgttggtgggttttgattattcttcataaacaatcataggttctagaaaaaagttgtaaaaatcaaatttttatactatgttgatgatgccttgtgaa |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19764964 |
aacgttggtgggttttgattattcttcataaacaatcataggttctagaaaaaagttgtaaaaatcaaatttttatactatgttgatgatgccttgtgaa |
19765063 |
T |
|
| Q |
212 |
tgaag |
216 |
Q |
| |
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||||| |
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| T |
19765064 |
tgaag |
19765068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 116 - 185
Target Start/End: Original strand, 19764853 - 19764923
Alignment:
| Q |
116 |
ttggtgggttttgattattcttcat-aaacaatcataggttctagaaaaaagttgtaaaaatcaaattttt |
185 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| || |||||| || |||| ||||||||||||| ||||| |
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|
| T |
19764853 |
ttggtgggttttgattattcttcataaaacaataatgggttcttgagaaaacttgtaaaaatcaatttttt |
19764923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 151; Significance: 3e-79; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 151; E-Value: 3e-79
Query Start/End: Original strand, 14 - 216
Target Start/End: Original strand, 394318 - 394518
Alignment:
| Q |
14 |
ttattcttcataaaacaataatgggttcttgagaaaacttgtaaaaatcaannnnnnnnnatattggggtgtttctgtttaatgcatttttattcaaaaa |
113 |
Q |
| |
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||||||||| |||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
394318 |
ttattcttcgtaaaacaataatgggttcttgagaaaacttttaaaaatcaaatttttt--atattggggtgtttctgtttaatgcatttttattcaaaaa |
394415 |
T |
|
| Q |
114 |
cgttggtgggttttgattattcttcataaacaatcataggttctagaaaaaagttgtaaaaatcaaatttttatactatgttgatgatgccttgtgaatg |
213 |
Q |
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||||||||||||||||||||||||||| ||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
394416 |
cgttggtgggttttgattattcttcatgaacaatcatgggttctagagaaaagttgtaaaaatcaaatttttatactatgttgatgatgccttgtgaatg |
394515 |
T |
|
| Q |
214 |
aag |
216 |
Q |
| |
|
||| |
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|
| T |
394516 |
aag |
394518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 312 - 378
Target Start/End: Original strand, 394611 - 394677
Alignment:
| Q |
312 |
atcacattatgtattgttgattgtgtctgaaattggtctcttgaatacgatttctttggtttgtctt |
378 |
Q |
| |
|
||||||||||||||| |||| |||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
394611 |
atcacattatgtatttttgactgtgtctgaaattggtctcttgaatatgatttctttggtttgtctt |
394677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 185
Target Start/End: Original strand, 394304 - 394374
Alignment:
| Q |
116 |
ttggtgggttttgattattcttcataaa-caatcataggttctagaaaaaagttgtaaaaatcaaattttt |
185 |
Q |
| |
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||||||||||||| ||||||||| |||| |||| || |||||| || |||| || |||||||||||||||| |
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| T |
394304 |
ttggtgggttttgtttattcttcgtaaaacaataatgggttcttgagaaaacttttaaaaatcaaattttt |
394374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 63; Significance: 9e-27; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 63; E-Value: 9e-27
Query Start/End: Original strand, 379 - 457
Target Start/End: Original strand, 12196802 - 12196880
Alignment:
| Q |
379 |
atatatcatagaataaaagcatactgtgctcacctgctcctgaaaccttatggtctgtcccttatatgcttatgtaaag |
457 |
Q |
| |
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|||| ||||||||||||| ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
12196802 |
atatctcatagaataaaatcatactgtgttcacctgctcctgaaaccttttggtctgtcccttatatgcttatgtaaag |
12196880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 63; E-Value: 9e-27
Query Start/End: Original strand, 379 - 457
Target Start/End: Original strand, 12441230 - 12441308
Alignment:
| Q |
379 |
atatatcatagaataaaagcatactgtgctcacctgctcctgaaaccttatggtctgtcccttatatgcttatgtaaag |
457 |
Q |
| |
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|||| ||||||||||||| ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
12441230 |
atatctcatagaataaaatcatactgtgttcacctgctcctgaaaccttttggtctgtcccttatatgcttatgtaaag |
12441308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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