View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14484_high_14 (Length: 531)
Name: NF14484_high_14
Description: NF14484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14484_high_14 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 486; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 486; E-Value: 0
Query Start/End: Original strand, 17 - 526
Target Start/End: Original strand, 35866119 - 35866628
Alignment:
| Q |
17 |
ataaatttctcggtgcaacatgcgcaacatgattaatcgaaaaccttggtttgtttaaatgttatatccataatctgttctgtacaatacattacatacc |
116 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
35866119 |
ataaatttcttggtgcaacatgcgcaacatgattaatcgaaaaccttggtttgtttaaatgttatatccataatctgttctgtacaaagcattacatacc |
35866218 |
T |
|
| Q |
117 |
atggaaaaataagcactacgatggaacctcgttgcagtggttgcagtggactgatatgaatttccaatgtcttcctcgatggaacctcgttctttatttg |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35866219 |
atggaaaaataagcactacgatggaacctcgttgcagtggttgcagtggactgatatgaatttccaatgtcttcctcgatggaacctcgttctttatttg |
35866318 |
T |
|
| Q |
217 |
gtatagttatttcgtttctcctatcaaaaagataacacacaagtcaaattgctttaaaagtgactaatattgcaataagttactattctgcttaagttat |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
35866319 |
gtatagttatttcgtttctcctatcaaaaagataacacacaagtcaaattgctttaaaagtgactaatattgcaataagttactattctgcttaacttat |
35866418 |
T |
|
| Q |
317 |
ttaactatccaaagtttcaaacaagctcttactgtgttcaacatgtgttttttagtgcctaatgacttttctatagtatagaaagtggaacttactcgta |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35866419 |
ttaactatccaaagtttcaaacaagctcttactgtgttcaacatgtgttttttagtgcctaatgacttttctatagtatagaaagtggaacttactcgta |
35866518 |
T |
|
| Q |
417 |
attaacattataatcctaagtttgtaaaataaaccattagaccaagaagcttaacaggggagtaaaaaatttgatcaattgggacaattaaactcattct |
516 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
35866519 |
attaacattataatcctaagtttgtaaaataaaccattagaccaagaagcttaacaggggagtaaaaaatttgatcaattgggacaataaaactcattct |
35866618 |
T |
|
| Q |
517 |
ttggcctttg |
526 |
Q |
| |
|
|||| ||||| |
|
|
| T |
35866619 |
ttggtctttg |
35866628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 97 - 138
Target Start/End: Original strand, 34815953 - 34815994
Alignment:
| Q |
97 |
tgtacaatacattacataccatggaaaaataagcactacgat |
138 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| |||||| |
|
|
| T |
34815953 |
tgtacaatgcattacataccatggaaaaataagcagtacgat |
34815994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University