View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14484_high_15 (Length: 527)
Name: NF14484_high_15
Description: NF14484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14484_high_15 |
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Alignment Details
Target: chr5 (Bit Score: 283; Significance: 1e-158; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 162 - 510
Target Start/End: Complemental strand, 17380309 - 17379959
Alignment:
| Q |
162 |
taaattttctaaaaattgagggctcttcattggatttgggtgacgagagaatgacaaatggtcataatctgtaaaagtcacaatcacattctgcaaaata |
261 |
Q |
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| T |
17380309 |
taaattttctaaagattgagggctcttcattggatttgggtgacgagagaatgacaaatggtcataatctgtaaaagtcacaatcacattctgcaaaata |
17380210 |
T |
|
| Q |
262 |
tatgtcttgatttgaaaatcagcttccaatggttcatagtctatattttaaatgctgttagatgagatgaaacacaatctagaacatgataaggatattc |
361 |
Q |
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|||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
17380209 |
tatgtcgtgattcgaaaatcagcttccaatggttcatagtctatattttaaatgatgttagatgagatgaaacacaatctagaacatgatatggatattc |
17380110 |
T |
|
| Q |
362 |
ccaatgctctatgttgttgagttcttttcttgtcgatcaaagacaaaataggatttgtaaaaatactcagaagataaga--gagtnnnnnnncagtataa |
459 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| ||| |||| |
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| T |
17380109 |
ccaatgctctaagttgttgagttcttttcttgtcgatcaaagacaaagtaggatttgtaaaaatactcagaagataagatcgagtaaaaaaacagcataa |
17380010 |
T |
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| Q |
460 |
actacccattgatgtgtcaaactaatctttataaagttaagagtttgaagt |
510 |
Q |
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| T |
17380009 |
actacccattgatgtgtcaaacaaatctttataaagttaagagtttgaagt |
17379959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 17380576 - 17380467
Alignment:
| Q |
1 |
gtaatagtataacagaaaaactaagtcatgtagaaatattttgtgcagaccatgcacacgtcaatccaattacgacctaacaacaattcaaaattcaaaa |
100 |
Q |
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| T |
17380576 |
gtaatagtataacagaaaaattaagtcatgtagaaatattttgtgcagacca----cacttcaatccaattaagacctaacaacaattcaaaattcaaaa |
17380481 |
T |
|
| Q |
101 |
gatattgacacaag |
114 |
Q |
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|||||||||||||| |
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| T |
17380480 |
gatattgacacaag |
17380467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 162 - 387
Target Start/End: Complemental strand, 17392799 - 17392578
Alignment:
| Q |
162 |
taaattttctaaaaattgagggctcttcattggatttgggtgacgagagaatgacaaatggtcataatctgtaaaagtcacaatcacattctgcaaaata |
261 |
Q |
| |
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|||||||||||||||||||||||||| |||||||||||||||| |||| |||| ||||||||||| |||||||||| || |||||||||||||| |
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| T |
17392799 |
taaattttctaaaaattgagggctctccattggatttgggtga--agagtatgatgaatggtcataacttgtaaaagtc----tcgcattctgcaaaata |
17392706 |
T |
|
| Q |
262 |
tatgtcttgatttgaaaatcagcttccaatggttcatagtctat-attttaaatgctgttagatgagatgaaacacaatctagaacatgataaggatatt |
360 |
Q |
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||||| || | ||||||||||||| | | |||||||||||| | || |||| |||||||||||| |||||||| ||| ||||||||| ||||||| |
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| T |
17392705 |
tatgttgcgaatcgaaaatcagcttcgcaagcttcatagtctataacttcaaattttgttagatgagacgaaacacattctggaacatgatctggatatt |
17392606 |
T |
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| Q |
361 |
cccaatgctctat-gttgttgagttctt |
387 |
Q |
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| T |
17392605 |
cccaatgctctatggttgttgaattctt |
17392578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 162 - 429
Target Start/End: Complemental strand, 17384088 - 17383826
Alignment:
| Q |
162 |
taaattttctaaaaattgagggctcttcattggatttgggtgacgagagaatgacaaatggtcataatctgtaaaagtcacaatcacattctgcaaaata |
261 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||| |||| ||| ||||||||||| ||||| ||||||| || |||||||||||||| |
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| T |
17384088 |
taaattttctaaaaattgagggctctccattggatttgggtga--agagtatggcaaatggtcat-atctgcaaaagtc----tcgcattctgcaaaata |
17383996 |
T |
|
| Q |
262 |
tatgtcttgatttgaaaatcagcttccaatggttcatagtctat-attttaaatgctgttagatgagatgaaacacaatctagaacatgataaggatatt |
360 |
Q |
| |
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||||| || | |||||||||||||| | | |||||||| || | || |||| |||||||| ||| |||||||| ||| ||||||||| ||||||| |
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| T |
17383995 |
tatgttgcgaatcgaaaatcagcttcccaagcttcatagtgcataacttcaaattttgttagattagacgaaacacattctggaacatgatctggatatt |
17383896 |
T |
|
| Q |
361 |
cccaatgctctatg-ttgttgagttcttttcttgtcgatcaaagacaaaataggatttgtaaaaatactc |
429 |
Q |
| |
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|||||||||||||| ||| ||| |||| | |||| ||| |||||||||||||| ||||||||||||| |
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| T |
17383895 |
cccaatgctctatgcttgctgaattctccgcctgtcaatccgagacaaaataggatatgtaaaaatactc |
17383826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 2 - 111
Target Start/End: Complemental strand, 17389624 - 17389519
Alignment:
| Q |
2 |
taatagtataacagaaaaactaagtcatgtagaaatattttgtgcagaccatgcacacgtcaatccaattacgacctaacaacaattcaaaattcaaaag |
101 |
Q |
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||||||||||||||||||| ||||||||||||||| ||| |||||| ||| ||| || |||||||||| |||||||||||||||||||||||||||| |
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| T |
17389624 |
taatagtataacagaaaaaataagtcatgtagaaa-attatgtgcacacct---acaagtaaatccaattatgacctaacaacaattcaaaattcaaaag |
17389529 |
T |
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| Q |
102 |
atattgacac |
111 |
Q |
| |
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|||||||||| |
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| T |
17389528 |
atattgacac |
17389519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 317 - 430
Target Start/End: Complemental strand, 17377571 - 17377460
Alignment:
| Q |
317 |
tgttagatgagatgaaacacaatctagaacatgataaggatattcccaatgctctatg-ttgttgagttcttttcttgtcgatcaaagacaaaataggat |
415 |
Q |
| |
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|||||||||||| |||||||| ||| ||||||||| ||||||||||||| ||||| ||||||| || || | |||||||| |||||||||||||| |
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| T |
17377571 |
tgttagatgagacgaaacacattctggaacatgatctggatattcccaat---ctatggttgttgaattattcgcctgtcgatccgagacaaaataggat |
17377475 |
T |
|
| Q |
416 |
ttgtaaaaatactca |
430 |
Q |
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||||||||||||||| |
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| T |
17377474 |
ttgtaaaaatactca |
17377460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 61; Significance: 6e-26; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 248 - 430
Target Start/End: Original strand, 26052744 - 26052928
Alignment:
| Q |
248 |
cattctgcaaaatatatgtcttgatttgaaaatcagcttccaatggttcatagtctatatttt-aaatgctgttagatgagatgaaacacaatctagaac |
346 |
Q |
| |
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||||||||||||||||||| || | ||| ||||| ||| | | ||||||||||||| || |||| ||||||||||||||||||||| ||| |||| |
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| T |
26052744 |
cattctgcaaaatatatgttgcgaatcgaatatcagtttcacaagcttcatagtctataacttcaaattttgttagatgagatgaaacacattctggaac |
26052843 |
T |
|
| Q |
347 |
atgataaggatattcccaatgctctat-gttgttgagttcttttcttgtcgatcaaagacaaaataggatttgtaaaaatactca |
430 |
Q |
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||||| |||||||||||||||||||| |||||||| | ||| || |||| ||| | ||||||||||||||||||||||||||| |
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| T |
26052844 |
atgatctggatattcccaatgctctatggttgttgaatacttctcctgtcaatccgatacaaaataggatttgtaaaaatactca |
26052928 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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