View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14484_high_17 (Length: 512)

Name: NF14484_high_17
Description: NF14484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14484_high_17
NF14484_high_17
[»] chr2 (6 HSPs)
chr2 (17-504)||(8904067-8904556)
chr2 (299-358)||(30313098-30313157)
chr2 (418-492)||(5543040-5543114)
chr2 (369-414)||(18204504-18204549)
chr2 (314-358)||(6422053-6422097)
chr2 (302-358)||(30323387-30323443)
[»] chr6 (4 HSPs)
chr6 (299-493)||(6071052-6071249)
chr6 (305-390)||(8481853-8481941)
chr6 (369-493)||(10074404-10074528)
chr6 (329-358)||(12092212-12092241)
[»] chr5 (3 HSPs)
chr5 (299-437)||(31509543-31509684)
chr5 (329-358)||(35150681-35150710)
chr5 (369-493)||(41632775-41632899)
[»] chr3 (2 HSPs)
chr3 (330-399)||(33809143-33809215)
chr3 (368-493)||(12114603-12114728)
[»] chr4 (4 HSPs)
chr4 (306-357)||(21504799-21504850)
chr4 (418-493)||(25483378-25483453)
chr4 (299-355)||(39099932-39099988)
chr4 (373-493)||(54017634-54017754)
[»] scaffold0113 (1 HSPs)
scaffold0113 (299-358)||(39759-39818)
[»] chr7 (1 HSPs)
chr7 (311-358)||(48243257-48243304)
[»] chr1 (2 HSPs)
chr1 (369-439)||(24600409-24600479)
chr1 (299-351)||(7329199-7329251)
[»] chr8 (2 HSPs)
chr8 (329-358)||(3670011-3670040)
chr8 (369-437)||(4154763-4154831)


Alignment Details
Target: chr2 (Bit Score: 405; Significance: 0; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 17 - 504
Target Start/End: Original strand, 8904067 - 8904556
Alignment:
Q  17 atttaccatctcaatgagtttgcaaaacgggatcaaacacaatgatctgtttttgtaaaatctgttagttaaaacttaatgagatgaataaa---gcttc 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||   |||||    
T  8904067 atttaccatctcaatgagtttgcaaaacgggatcaaacacaatgatctgttattgtaaaatctgttagttaaaacttaatgagctgaataaattagcttc 8904166  T
Q  114 cttatttttagcaacaacttaaactttgcccattcggtttgaaacgaatcactgaatactagcataacatacaataactcacttacctgtctctattgta 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8904167 cttatttttagcaacaacttaaactttgcccattcggtttgaaacgaatcactgaatactagcataacatacaataactcacttacctgtctctattgta 8904266  T
Q  214 atttacacatgtcttaaggtattcctggcaaggtgcttaggccgcgacgtttagtgcgcaaatgacaaaagtggtacaagatagagtgtgcggatgaaag 313  Q
    ||||||||| ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8904267 atttacacaagtcttaaggtattcctggcaaggtgcttaggcgacgacgtttagtgcgcaaatgacaaaagtggtacaagatagagtgtgcggatgaaag 8904366  T
Q  314 aacttccacttaaaaggtgagcatgatgaattgatggactcacacagagatagattgttgtgtgcaattgtaagttagaagtcccatgtctgttagaaaa 413  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||    
T  8904367 aacttccacttgaaaggtgagcatgatgaattgatggactcacacagagatagattgttgtgtgcaattgtaagttagaagtcccatgcctgttag-aaa 8904465  T
Q  414 gtttaggttgaacattttataagtaatgagatccataaaccaattgccatatgattttaggtaaaagtgtagtgtctctcccacctatgct 504  Q
    |||||||||| | ||||||||||| ||| |||||||||||||||||||||||| |||| ||||||||||| ||||||||| ||| ||||||    
T  8904466 gtttaggttggatattttataagtgatgggatccataaaccaattgccatatggttttgggtaaaagtgtggtgtctctctcacttatgct 8904556  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 299 - 358
Target Start/End: Original strand, 30313098 - 30313157
Alignment:
Q  299 gtgtgcggatgaaagaacttccacttaaaaggtgagcatgatgaattgatggactcacac 358  Q
    |||||||||||||||| ||||| ||| |  |||||||||||||||||| |||||||||||    
T  30313098 gtgtgcggatgaaagagcttccgcttgaggggtgagcatgatgaattgttggactcacac 30313157  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 418 - 492
Target Start/End: Complemental strand, 5543114 - 5543040
Alignment:
Q  418 aggttgaacattttataagtaatgagatccataaaccaattgccatatgattttaggtaaaagtgtagtgtctct 492  Q
    ||||||||||  ||||||||||   |||||||||||| |||||| || |||||| ||||| ||||| ||||||||    
T  5543114 aggttgaacaccttataagtaagaggatccataaacctattgccttaagattttgggtaagagtgtggtgtctct 5543040  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 414
Target Start/End: Complemental strand, 18204549 - 18204504
Alignment:
Q  369 tgttgtgtgcaattgtaagttagaagtcccatgtctgttagaaaag 414  Q
    |||||||||||| ||| |||||||||||||| ||| ||||||||||    
T  18204549 tgttgtgtgcaagtgtgagttagaagtcccaagtcggttagaaaag 18204504  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 314 - 358
Target Start/End: Original strand, 6422053 - 6422097
Alignment:
Q  314 aacttccacttaaaaggtgagcatgatgaattgatggactcacac 358  Q
    ||||||| ||| || || |||||||||||||||||||||||||||    
T  6422053 aacttccgcttgaagggggagcatgatgaattgatggactcacac 6422097  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 302 - 358
Target Start/End: Original strand, 30323387 - 30323443
Alignment:
Q  302 tgcggatgaaagaacttccacttaaaaggtgagcatgatgaattgatggactcacac 358  Q
    ||||||||||||| | ||| ||| |  | ||||||||||||||||||||||||||||    
T  30323387 tgcggatgaaagagcatccgcttgagggatgagcatgatgaattgatggactcacac 30323443  T

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Target: chr6 (Bit Score: 44; Significance: 8e-16; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 299 - 493
Target Start/End: Original strand, 6071052 - 6071249
Alignment:
Q  299 gtgtgcggatgaaagaacttccacttaaaaggtgagcatgatgaattgatggactcaca---cagagatagattgttgtgtgcaattgtaagttagaagt 395  Q
    |||||||||||||||| |||||  ||||  |||||||||||||||||||||||||||||    || |  |||||||||||||||| ||| ||||| | ||    
T  6071052 gtgtgcggatgaaagagcttccgtttaaggggtgagcatgatgaattgatggactcacatttgaggggaagattgttgtgtgcaagtgtgagttatatgt 6071151  T
Q  396 cccatgtctgttagaaaagtttaggttgaacattttataagtaatgagatccataaaccaattgccatatgattttaggtaaaagtgtagtgtctctc 493  Q
    ||||  |    |||||||||  |||||||||| ||||||||| |   |||||||||||  |||||| || |||||| | ||| ||||| | |||||||    
T  6071152 cccacattgaatagaaaagtggaggttgaacactttataagtgagatgatccataaactcattgccttaagattttggataagagtgtggcgtctctc 6071249  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 305 - 390
Target Start/End: Original strand, 8481853 - 8481941
Alignment:
Q  305 ggatgaaagaacttccacttaaaaggtgagcatgatgaattgatggactcacac---agagatagattgttgtgtgcaattgtaagtta 390  Q
    |||||||||| ||| |||||||| |||||| ||| |||||||||||||||||||   || |  |||||||||||||||| ||| |||||    
T  8481853 ggatgaaagagctttcacttaaatggtgagtatggtgaattgatggactcacacttgagggggagattgttgtgtgcaagtgtgagtta 8481941  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 369 - 493
Target Start/End: Complemental strand, 10074528 - 10074404
Alignment:
Q  369 tgttgtgtgcaattgtaagttagaagtcccatgtctgttagaaaagtttaggttgaacattttataagtaatgagatccataaaccaattgccatatgat 468  Q
    |||||||||||| ||| ||||||| ||||||  || | |||||||||  ||||||||||  ||||||||||   || ||||||||  |||||| || | |    
T  10074528 tgttgtgtgcaagtgtgagttagaggtcccacatcggatagaaaagtaaaggttgaacaccttataagtaagaggacccataaactcattgccttaaggt 10074429  T
Q  469 tttaggtaaaagtgtagtgtctctc 493  Q
    ||| ||||| ||||| |||||||||    
T  10074428 tttgggtaagagtgtggtgtctctc 10074404  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 329 - 358
Target Start/End: Complemental strand, 12092241 - 12092212
Alignment:
Q  329 ggtgagcatgatgaattgatggactcacac 358  Q
    ||||||||||||||||||||||||||||||    
T  12092241 ggtgagcatgatgaattgatggactcacac 12092212  T

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Target: chr5 (Bit Score: 44; Significance: 8e-16; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 299 - 437
Target Start/End: Original strand, 31509543 - 31509684
Alignment:
Q  299 gtgtgcggatgaaagaacttccacttaaaaggtgagcatgatgaattgatggactcacac---agagatagattgttgtgtgcaattgtaagttagaagt 395  Q
    |||||| ||||||||| ||||| ||| |  ||||||||||||||||||||||||||||||   || || |||||||||||||||| ||| ||||| | ||    
T  31509543 gtgtgcagatgaaagagcttccgcttgaggggtgagcatgatgaattgatggactcacacttgagggagagattgttgtgtgcaagtgtgagttatatgt 31509642  T
Q  396 cccatgtctgttagaaaagtttaggttgaacattttataagt 437  Q
    | ||  || | |||||||||  ||||||| || |||||||||    
T  31509643 ctcacatcggatagaaaagtggaggttgagcactttataagt 31509684  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 329 - 358
Target Start/End: Original strand, 35150681 - 35150710
Alignment:
Q  329 ggtgagcatgatgaattgatggactcacac 358  Q
    ||||||||||||||||||||||||||||||    
T  35150681 ggtgagcatgatgaattgatggactcacac 35150710  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 369 - 493
Target Start/End: Original strand, 41632775 - 41632899
Alignment:
Q  369 tgttgtgtgcaattgtaagttagaagtcccatgtctgttagaaaagtttaggttgaacattttataagtaatgagatccataaaccaattgccatatgat 468  Q
    |||||||||||| ||||||||| | ||| ||  || | |||||||||  ||||||||||  ||||||||||   || ||||||||| | |||  || |||    
T  41632775 tgttgtgtgcaagtgtaagttatatgtctcacatcggatagaaaagtaaaggttgaacaccttataagtaagaggacccataaacccaatgctttaagat 41632874  T
Q  469 tttaggtaaaagtgtagtgtctctc 493  Q
    ||| ||||| ||||| |||||||||    
T  41632875 tttgggtaagagtgtggtgtctctc 41632899  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 330 - 399
Target Start/End: Complemental strand, 33809215 - 33809143
Alignment:
Q  330 gtgagcatgatgaattgatggactcaca---cagagatagattgttgtgtgcaattgtaagttagaagtccca 399  Q
    ||||||||||||||||||||||||||||   |||||| | |||||||||||||| ||||||||| | ||||||    
T  33809215 gtgagcatgatgaattgatggactcacacttcagagagaaattgttgtgtgcaagtgtaagttatatgtccca 33809143  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 368 - 493
Target Start/End: Complemental strand, 12114728 - 12114603
Alignment:
Q  368 ttgttgtgtgcaattgtaagttagaagtcccatgtctgttagaaaagtttaggttgaacattttataagtaatgagatccataaaccaattgccatatga 467  Q
    ||||||||||||| ||||||||| |  |||||  || | |||||||||  ||||||||||  ||||||||||   || ||||||||| |||| | || |     
T  12114728 ttgttgtgtgcaagtgtaagttatatatcccacatcggatagaaaagtaaaggttgaacaccttataagtaagaggacccataaacccattgtcttaagg 12114629  T
Q  468 ttttaggtaaaagtgtagtgtctctc 493  Q
    |||| ||||| ||||| |||||||||    
T  12114628 ttttgggtaagagtgtggtgtctctc 12114603  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 306 - 357
Target Start/End: Complemental strand, 21504850 - 21504799
Alignment:
Q  306 gatgaaagaacttccacttaaaaggtgagcatgatgaattgatggactcaca 357  Q
    ||||||||||||||||||| |  |||||||||||||||| ||||||||||||    
T  21504850 gatgaaagaacttccacttgaggggtgagcatgatgaatcgatggactcaca 21504799  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 418 - 493
Target Start/End: Original strand, 25483378 - 25483453
Alignment:
Q  418 aggttgaacattttataagtaatgagatccataaaccaattgccatatgattttaggtaaaagtgtagtgtctctc 493  Q
    ||||||||||| ||||||||||   |||||||||||| |||||| || | |||| ||||| ||||| |||||||||    
T  25483378 aggttgaacatcttataagtaagaggatccataaacccattgccttaaggttttgggtaagagtgtggtgtctctc 25483453  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 299 - 355
Target Start/End: Complemental strand, 39099988 - 39099932
Alignment:
Q  299 gtgtgcggatgaaagaacttccacttaaaaggtgagcatgatgaattgatggactca 355  Q
    ||||| ||||||||||||| |  ||| | ||||||||||||||||| ||||||||||    
T  39099988 gtgtgtggatgaaagaactccagcttgagaggtgagcatgatgaatcgatggactca 39099932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 373 - 493
Target Start/End: Complemental strand, 54017754 - 54017634
Alignment:
Q  373 gtgtgcaattgtaagttagaagtcccatgtctgttagaaaagtttaggttgaacattttataagtaatgagatccataaaccaattgccatatgatttta 472  Q
    |||||||| ||| ||||| | |||||| ||| | || || |||  ||||||||||| ||||||||||   || ||||||||| |||||| || | |||||    
T  54017754 gtgtgcaagtgtgagttatatgtcccacgtcagataaaatagtaaaggttgaacatcttataagtaagaggacccataaacccattgccttaaggtttta 54017655  T
Q  473 ggtaaaagtgtagtgtctctc 493  Q
    ||||| |||||  ||||||||    
T  54017654 ggtaagagtgtgatgtctctc 54017634  T

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Target: scaffold0113 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 299 - 358
Target Start/End: Original strand, 39759 - 39818
Alignment:
Q  299 gtgtgcggatgaaagaacttccacttaaaaggtgagcatgatgaattgatggactcacac 358  Q
    |||||| ||||||||| ||||| ||| |  ||||||||||||||||||||| ||||||||    
T  39759 gtgtgcagatgaaagagcttccgcttgaggggtgagcatgatgaattgatgaactcacac 39818  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 311 - 358
Target Start/End: Complemental strand, 48243304 - 48243257
Alignment:
Q  311 aagaacttccacttaaaaggtgagcatgatgaattgatggactcacac 358  Q
    |||||||||||||| || || |||||||||||||||||||| ||||||    
T  48243304 aagaacttccacttgaagggggagcatgatgaattgatggattcacac 48243257  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 369 - 439
Target Start/End: Complemental strand, 24600479 - 24600409
Alignment:
Q  369 tgttgtgtgcaattgtaagttagaagtcccatgtctgttagaaaagtttaggttgaacattttataagtaa 439  Q
    |||||||||||| ||| ||||| | ||||||| || | |||||||||  ||||||||||| ||||||||||    
T  24600479 tgttgtgtgcaagtgtgagttatatgtcccatatcggatagaaaagtaaaggttgaacatattataagtaa 24600409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 299 - 351
Target Start/End: Original strand, 7329199 - 7329251
Alignment:
Q  299 gtgtgcggatgaaagaacttccacttaaaaggtgagcatgatgaattgatgga 351  Q
    |||| ||||||||||||||||| ||||| |||  | |||||||||||||||||    
T  7329199 gtgttcggatgaaagaacttccgcttaagaggcaaacatgatgaattgatgga 7329251  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 329 - 358
Target Start/End: Original strand, 3670011 - 3670040
Alignment:
Q  329 ggtgagcatgatgaattgatggactcacac 358  Q
    ||||||||||||||||||||||||||||||    
T  3670011 ggtgagcatgatgaattgatggactcacac 3670040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 369 - 437
Target Start/End: Complemental strand, 4154831 - 4154763
Alignment:
Q  369 tgttgtgtgcaattgtaagttagaagtcccatgtctgttagaaaagtttaggttgaacattttataagt 437  Q
    |||||||||||| ||| ||||| | ||||||  |||| |||||||||  |||||||||| |||||||||    
T  4154831 tgttgtgtgcaagtgtgagttatatgtcccacatctgatagaaaagtggaggttgaacactttataagt 4154763  T

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