View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14484_high_19 (Length: 502)
Name: NF14484_high_19
Description: NF14484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14484_high_19 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 446; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 11 - 484
Target Start/End: Original strand, 43861553 - 43862026
Alignment:
| Q |
11 |
cagagagttcaagtgatgaacaagttcaaaaacctaatccctcaaagccattaccacctaagagaattttgtgtgagtttgtgcaaccaaatccggaaat |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
43861553 |
cagagagttcaagtgatgaacaagttcaaaaacctaatccctcaaaaccattactacctaagagaattttgtgtgagtttgtgcaaccaaatccagaaat |
43861652 |
T |
|
| Q |
111 |
agttaaaaagcttcctcaaaaacaaggattgtggagaaggttttccacaagcatttacaaaggtgttcggcgcctccgtgggaaaaaggaaagatatgca |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| |
|
|
| T |
43861653 |
agttaaaaagcttcctcaaaaacaaggattgtggagaaggttttccacaagcatttacaaaggttttcggcgcctccgtgggaacaaggaaagatatgca |
43861752 |
T |
|
| Q |
211 |
gctcagattagaaatccatttgaaaagacaactgagtaccttggtactcatgataccgagtatgaagctgctttggcttatcgcagaaagactaaggagt |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43861753 |
gctcagattagaaatccatttgaaaagacaactgagtaccttggtactcatgataccgagtatgaagctgctttggcttatcgcagaaagactaaggagt |
43861852 |
T |
|
| Q |
311 |
tccataaaagaaagttggctgattcgaacaaggacaaacaaggtttggctcattcatctcttgaattaatcattagtactttgcttaattattatcatta |
410 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43861853 |
tccataaaagaaagttagctgattcgaacaaggacaaacaaggtttggctcattcatctcttgaattaatcattagtactttgcttaattattatcatta |
43861952 |
T |
|
| Q |
411 |
attattactaacgtatcaaatttatgaagatgatgttgattatgattagtgtattgttaatttgttaaggagag |
484 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43861953 |
attactactaacgtatcaaatttatgaagatgatgttgattatgattagtgtattgttaatttgttaaggagag |
43862026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University