View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14484_high_20 (Length: 499)
Name: NF14484_high_20
Description: NF14484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14484_high_20 |
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Alignment Details
Target: chr6 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 16 - 490
Target Start/End: Complemental strand, 13115390 - 13114920
Alignment:
| Q |
16 |
aaagtatattattgccacttaacataactattgaatatggc-catattnnnnnnnnnnncaagtgggagttttaggtatattcctttgcccccaggcgta |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||| || |||||| ||||||||||||| ||||| |||||||||||| |||| | |
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| T |
13115390 |
aaagtatattattgccacttaacataactattgaatatagctcatattaaaaaaaa---caagtgggagtttaaggtacgttcctttgcccct-ggcgca |
13115295 |
T |
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| Q |
115 |
aatgtgcggcgaggtctataaagagggagttttagcacaagtttgaatgttgaaaaatgctttagaagatatggaatgaagattgtcgatgaataaggcc |
214 |
Q |
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||| ||| ||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
13115294 |
aattcgcgacgaggtctataaagagggagttttagcaccagtttgaatgttaaaaaatgctttagaagatatggaatgaagattgtcaatgaataaggct |
13115195 |
T |
|
| Q |
215 |
ttgaagacatcataagatgggaaaattttgtcccaagatcaatttgcataaagaaaacactcaaagtacgacgaataaggggaaatcagtacctgcacct |
314 |
Q |
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||||||||||||||||||| | |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
13115194 |
ttgaagacatcataagatgcggaaattttgtcccaagatcaattcgcataaagaaaacactcaaagtacgacgaatagggggaaatcagtacctgcacct |
13115095 |
T |
|
| Q |
315 |
gaagccacattcctcaagatcttgctctctgtcagttgctatgcgtcgcgtcgtgcacatgctgctctagaaaaaagcagctttccacccataatttccg |
414 |
Q |
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||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| ||||| ||||||| |||||||||||||| || |||||| |
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| T |
13115094 |
gaagccacattcctcaagatcttgctctctgtcagctgctatccgtcgcgtcgtgc-catgccgctctaggaaaaagcagctttctactacctttttccg |
13114996 |
T |
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| Q |
415 |
tgggttaggagaaaaagcccataatttcaacccaaatttcgcaagagatattaccaactatatatagatttcattt |
490 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13114995 |
tgggttaggagaaaaagcccataatttcagcccaaatttcgcaagagatattaccaactatatatagatttcattt |
13114920 |
T |
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