View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14484_high_23 (Length: 474)
Name: NF14484_high_23
Description: NF14484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14484_high_23 |
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Alignment Details
Target: chr6 (Bit Score: 444; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 16 - 467
Target Start/End: Complemental strand, 13608352 - 13607902
Alignment:
| Q |
16 |
caacaatgtcatttttatgaagagcgccaaaaagatgatcagtgaaattgttgcgcgtgtcttcgccacggaagctcacaaacacatcatatttccattt |
115 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13608352 |
caacaatgtcatttttatga-gagcgccaaaaagatgatcagtgaaattgttgcgcgtgtcttcgccacggaagctcacaaacacatcatatttccattt |
13608254 |
T |
|
| Q |
116 |
catcctcctagatgaagagacagtttggatgctactactagccattgaaattgtaaaagccaaaactaacttgctaaggatgatgtagttagtttgcact |
215 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13608253 |
catcctcctagatgaagagacagtttggatgctactactagccattgaaattgtaaaagccaaaactaacttgctaaggatgatgtagttagtttgcact |
13608154 |
T |
|
| Q |
216 |
gtttcttgctgtgaaactgaaaagaaaaattagataattgttataagttgttaagaatagtctcactttacattgcaacgcagcttaaatataattgttg |
315 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13608153 |
gtttcttgctgtgaaactgaaaagaaaaattagataattgttataagttgttaagaatagtctcactttacattgcaacgcagcttaaatataattgttg |
13608054 |
T |
|
| Q |
316 |
gagtattcgtagttgagtcttttccaggatctttcttgccagcttccacaaacattcgtatgtaacatccttggaattttccactaacatattttggtca |
415 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13608053 |
gagtattcgtagttgagtcttttccaggatctttcttgccagcttccacaaacattcgtatgtaacatccttggaattttccactaacatattttggtca |
13607954 |
T |
|
| Q |
416 |
agttcctttcatctttcgctactttttcttcacattttagtggttacctatg |
467 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13607953 |
agttcctttcatctttcgctactttttcttcacattttagtggttacctatg |
13607902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 43 - 106
Target Start/End: Original strand, 33412747 - 33412810
Alignment:
| Q |
43 |
caaaaagatgatcagtgaaattgttgcgcgtgtcttcgccacggaagctcacaaacacatcata |
106 |
Q |
| |
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||||||||| |||||||||||||||||| |||||||| || | |||| | |||||||||||||| |
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|
| T |
33412747 |
caaaaagataatcagtgaaattgttgcgagtgtcttcacctctgaaggtgacaaacacatcata |
33412810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 43 - 106
Target Start/End: Original strand, 33390902 - 33390965
Alignment:
| Q |
43 |
caaaaagatgatcagtgaaattgttgcgcgtgtcttcgccacggaagctcacaaacacatcata |
106 |
Q |
| |
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|||||||| |||| ||||||||||||| |||||||| || |||||| | |||||||||||||| |
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| T |
33390902 |
caaaaagaaaatcaatgaaattgttgcgagtgtcttcacctcggaaggtgacaaacacatcata |
33390965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 111; Significance: 8e-56; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 16 - 233
Target Start/End: Original strand, 6473296 - 6473518
Alignment:
| Q |
16 |
caacaatgtcatttttatgaagagcgccaaaaagatgatcagtgaaattgttgcgcgtgtcttcgccacggaagctcacaaacacatcatatttccattt |
115 |
Q |
| |
|
|||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| |
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| T |
6473296 |
caacaatgcgatttttatgaagagcaccaaaaagatgatcagtgaaattgttgcgcgtgtcttcgcctcgaaagctcacaaacacatcatatttccatt- |
6473394 |
T |
|
| Q |
116 |
catcctcctagatgaagagacagtttggatgctactactagccattgaaattgtaaaag--------ccaaaactaacttgctaaggatgatgtagttag |
207 |
Q |
| |
|
|||||||| |||||||||| ||||||||||||||| || |||| ||||||| |||| |||||||||||||||||||||| |||| || | |
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| T |
6473395 |
--tcctcctatttgaagagacactttggatgctactacgagtcattcaaattgttaaagccaaaggcccaaaactaacttgctaaggattttgtattttg |
6473492 |
T |
|
| Q |
208 |
tttgcactgtttcttgctgtgaaact |
233 |
Q |
| |
|
||||||||||| |||||| ||||||| |
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| T |
6473493 |
tttgcactgttgcttgctatgaaact |
6473518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 313 - 400
Target Start/End: Original strand, 6473569 - 6473662
Alignment:
| Q |
313 |
ttggagtattcgtag--ttgagtcttttccaggatctttcttgccagct----tccacaaacattcgtatgtaacatccttggaattttccact |
400 |
Q |
| |
|
|||||||||||||| ||||| |||||||||| |||||||||| |||| ||||| ||||||||||||||||| ||||||||||| ||||| |
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| T |
6473569 |
ttggagtattcgtacatttgagccttttccagggtctttcttgctagctagcttccaccaacattcgtatgtaacacccttggaatttcccact |
6473662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 71; Significance: 6e-32; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 17 - 202
Target Start/End: Complemental strand, 31244330 - 31244142
Alignment:
| Q |
17 |
aacaatgtcatttttatgaagagcgccaaaaagatgatcagtgaaattgttgcgcgtgtcttcgccacggaagctcacaaacacatcatatttccatttc |
116 |
Q |
| |
|
||||||| | |||||||| |||| ||||||||| |||||||||||||||||||| ||||| | || | |||||||||||||||||||||||||||||| |
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| T |
31244330 |
aacaatgccttttttatggagagtgccaaaaaggtgatcagtgaaattgttgcgtgtgtcgccacctctaaagctcacaaacacatcatatttccatttc |
31244231 |
T |
|
| Q |
117 |
atcctcctagatgaagagacagtttggatgctactactagc------cattgaaattgtaaaagccaaaactaacttgctaaggatgatgta |
202 |
Q |
| |
|
| || ||| |||||||| | || |||||||| ||| ||| ||||| ||||||||||||||||||||||||||| ||||||||||| |
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| T |
31244230 |
a---tcttaggtgaagagatacttcggatgctattacaagccattgtcattgcaattgtaaaagccaaaactaacttgctgaggatgatgta |
31244142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 42 - 110
Target Start/End: Complemental strand, 31482104 - 31482036
Alignment:
| Q |
42 |
ccaaaaagatgatcagtgaaattgttgcgcgtgtcttcgccacggaagctcacaaacacatcatatttc |
110 |
Q |
| |
|
|||||||||||||||||||| ||||| || ||||| || |||| ||| ||||||||||| ||||||||| |
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| T |
31482104 |
ccaaaaagatgatcagtgaatttgttacgtgtgtcatcaccacagaaactcacaaacacgtcatatttc |
31482036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 53 - 106
Target Start/End: Complemental strand, 31476257 - 31476204
Alignment:
| Q |
53 |
atcagtgaaattgttgcgcgtgtcttcgccacggaagctcacaaacacatcata |
106 |
Q |
| |
|
|||||||||||||||||| || ||||| || | ||||||||||||||| ||||| |
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|
| T |
31476257 |
atcagtgaaattgttgcgagtatcttcacctctgaagctcacaaacacgtcata |
31476204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 43 - 76
Target Start/End: Complemental strand, 31496207 - 31496174
Alignment:
| Q |
43 |
caaaaagatgatcagtgaaattgttgcgcgtgtc |
76 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| |
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|
| T |
31496207 |
caaaaagatgatcagtgaaattgttgcgagtgtc |
31496174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 43 - 79
Target Start/End: Complemental strand, 31501377 - 31501341
Alignment:
| Q |
43 |
caaaaagatgatcagtgaaattgttgcgcgtgtcttc |
79 |
Q |
| |
|
|||||||||||| ||||||||||||||| |||||||| |
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| T |
31501377 |
caaaaagatgataagtgaaattgttgcgagtgtcttc |
31501341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 128 - 189
Target Start/End: Original strand, 17599893 - 17599954
Alignment:
| Q |
128 |
tgaagagacagtttggatgctactactagccattgaaattgtaaaagccaaaactaacttgc |
189 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||| ||| ||||||||||| ||||||||| |
|
|
| T |
17599893 |
tgaagagacactttggatgctactactagccattgatattataaaagccaaagctaacttgc |
17599954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 128 - 189
Target Start/End: Complemental strand, 14723957 - 14723896
Alignment:
| Q |
128 |
tgaagagacagtttggatgctactactagccattgaaattgtaaaagccaaaactaacttgc |
189 |
Q |
| |
|
|||||||||| |||||||||||||| |||||||||| ||| ||||||||||| ||||||||| |
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|
| T |
14723957 |
tgaagagacactttggatgctactattagccattgatattataaaagccaaagctaacttgc |
14723896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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