View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14484_high_25 (Length: 456)
Name: NF14484_high_25
Description: NF14484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14484_high_25 |
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Alignment Details
Target: chr5 (Bit Score: 348; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 26 - 437
Target Start/End: Complemental strand, 25468752 - 25468341
Alignment:
| Q |
26 |
tgcattcaaccctttaaaaatagtataactgatttgttagatagacctcatttgttattaagggatacagccattttagtttctgattatgaattttgtt |
125 |
Q |
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| T |
25468752 |
tgcattcaaccctttaaaaaaagtataagtgatttgttagatagacctcatttgttattaaggaatacaaccattttagtctctgactatgcattgtgct |
25468653 |
T |
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| Q |
126 |
gttaaaatggtccctactcgggataaaatgtaaaatagtccctggatgtatacctatgttaaccaattaagtccttgacgttaaaattgaccattcaaag |
225 |
Q |
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| T |
25468652 |
gtcaaaatggtccctactcgggataaaatgtaaaatagtccctgaatgtatacctatgttaaccaattaagtccttgacgttaaaattgaccattaaaag |
25468553 |
T |
|
| Q |
226 |
atgagctgacaattgttttgacaatcaaggatgtatgatgtggatccatggactaaagtgacaaaaaacaattagaaattatcataatgcaaaatagtac |
325 |
Q |
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| T |
25468552 |
atgagctgacaattgttttgacaatcaaggatgtatgatgtggatctatggactaaagtgacaaaaaacaattagaaattatcataatgcaaaatagtac |
25468453 |
T |
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| Q |
326 |
aattttgttttaaactgatttatgtaaaattctactgttaatggttccaaaagtcattgtgtttgttgggttctccgttcttaaaccacaaaccacttag |
425 |
Q |
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| T |
25468452 |
aattgtgttttaaactgatttatgtgaaattctactgttaatggttccaaaagtcattgtgtttgttgggttcttcgttcttaaaccacaaaccacttag |
25468353 |
T |
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| Q |
426 |
gcaatatcatgt |
437 |
Q |
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| T |
25468352 |
gcaatatcatgt |
25468341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 55 - 198
Target Start/End: Complemental strand, 25473811 - 25473667
Alignment:
| Q |
55 |
tgatttgttagatagacctcatttgttattaagggatacagccattttagtttctgattatgaattttgttgttaaaatggtccct-actcgggataaaa |
153 |
Q |
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| T |
25473811 |
tgatttgttaaatagacctcatttgttattaagggatacaaccattttggtccctgaccatgcatatcgctgtcacaatggtccctgactcaagataaaa |
25473712 |
T |
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| Q |
154 |
tgtaaaatagtccctggatgtatacctatgttaaccaattaagtc |
198 |
Q |
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| T |
25473711 |
tgtaaaatagtccctagatgtgtacctctgttagccaattaagtc |
25473667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 311 - 389
Target Start/End: Original strand, 25473346 - 25473424
Alignment:
| Q |
311 |
aatgcaaaatagtacaattttgttttaaactgatttatgtaaaattctactgttaatggttccaaaagtcattgtgttt |
389 |
Q |
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| T |
25473346 |
aatgcaaaatagtacaattgtgttttgtactgatttatgtgaaagtctgctactaatggttcttaaattcattgtgttt |
25473424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 25468948 - 25468915
Alignment:
| Q |
1 |
ctttgcaaggcttgttagctagttatgcattcaa |
34 |
Q |
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| T |
25468948 |
ctttgcaaggcttgttagctagttctgcattcaa |
25468915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 141 - 213
Target Start/End: Complemental strand, 7626381 - 7626309
Alignment:
| Q |
141 |
actcgggataaaatgtaaaatagtccctggatgtatacctatgttaaccaattaagtccttgacgttaaaatt |
213 |
Q |
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| T |
7626381 |
actcaggataaaatgtaaaatagtttttggatgtatacttctgttaaccaatttaatccttgacgtttaaatt |
7626309 |
T |
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