View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14484_high_27 (Length: 434)
Name: NF14484_high_27
Description: NF14484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14484_high_27 |
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Alignment Details
Target: chr4 (Bit Score: 359; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 18 - 433
Target Start/End: Original strand, 24986843 - 24987254
Alignment:
| Q |
18 |
acttggtagcactctagaccaagcaatggaaaatctgtaagcatccatattcaaatcctttatgattccaatatcttcctaaaacacatagatcgagcac |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| | | |
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| T |
24986843 |
acttggtagcactctagaccaagcaatggaaaatctgtaagcatccatattcaaatcctttatgattccaatatcttcctgaaatacataga----gtag |
24986938 |
T |
|
| Q |
118 |
tctatcatgactctaaatatatgttacatttgtattttttattcctctgcaaaactacataccttgtaccgatgatatgcgtcgtcggctacatctccat |
217 |
Q |
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||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24986939 |
cctatcatgactctaaatatatgttacatttgtattttatatacttctgcaaaactacataccttgtaccgatgatatgcgtcgtcggctacatctccat |
24987038 |
T |
|
| Q |
218 |
tacctccatctcttattttttctgcaagccatttcatttatatatatgagaagttcattcatgctatgtaactaggcaattcaatatataagtaaagcaa |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24987039 |
tacctccatctcttattttttctgcaagccatttcatttatatatatgagaagtccattcatgctatgtaactaggcaattcaatatataagtaaagcaa |
24987138 |
T |
|
| Q |
318 |
gcaaaaacttatgctatgttggatcatcaagatattcagatgctacttatgctgaaaatgactattgatcaagattctagcatcaaatacatcattaagg |
417 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24987139 |
gcaaaaacttatgctatgttggatcatcaaggtattcagatgctacttatgctgaaaatgactattgatcaagattctagcatcaaatacatcattaagg |
24987238 |
T |
|
| Q |
418 |
gaaagatagcaaattg |
433 |
Q |
| |
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|||||||||||||||| |
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| T |
24987239 |
gaaagatagcaaattg |
24987254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 18 - 298
Target Start/End: Complemental strand, 25000297 - 25000013
Alignment:
| Q |
18 |
acttggtagcactctagaccaagcaatggaaaatctgtaagcatccatattcaaatcctttatgattccaatatcttcctaaaacacatagatcgagcac |
117 |
Q |
| |
|
||||||||||||||||||||||| ||| |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||| |
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|
| T |
25000297 |
acttggtagcactctagaccaagaaattgaaaatctataagcatccatattcaaatccttcatgattccaatatcttcctaaaatacata----aagcag |
25000202 |
T |
|
| Q |
118 |
tctatcatgactctaaatatatgttacatttgtattttttattcctctgcaaaacta----------cataccttgtaccgatgatatgcgtcgtcggct |
207 |
Q |
| |
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||| ||| |||||||| |||| |||||||||| ||||| ||| |||||||||||||| |||||||||||||||||||| | |||||||||| |
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| T |
25000201 |
tctttcaggactctaagtataagttacatttgcattttatatacctctgcaaaactacaatttggaccataccttgtaccgatgatacgagtcgtcggct |
25000102 |
T |
|
| Q |
208 |
acatctccattacctccatctcttattttttctgcaagccatttcatttatatatatgagaagttcattcatgctatgtaactaggcaatt |
298 |
Q |
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|||||||||||| || |||||| |||||||||||||| ||||||||| ||| ||||||| | || | |||| ||||||||||||||||| |
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| T |
25000101 |
acatctccattatgtctatctctaattttttctgcaagacatttcattgataaatatgaggaatt--tacatgttatgtaactaggcaatt |
25000013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 18 - 266
Target Start/End: Original strand, 25047259 - 25047508
Alignment:
| Q |
18 |
acttggtagcactctagaccaagcaatggaaaatctgtaagcatccatattcaaatcctttatgattccaatatcttcctaaaacacatagatcgagcac |
117 |
Q |
| |
|
|||||||| ||||||||||||| |||||| ||||| |||||||||||||||| || ||| |||||||||| ||||||||||| || | | ||| |
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| T |
25047259 |
acttggtaagactctagaccaagaaatggagaatctataagcatccatattcatatacttcatgattccaacatcttcctaaa----atcagtaaaccac |
25047354 |
T |
|
| Q |
118 |
tctatcatgactctaaatatatgttacatttgtattttttattcctctgcaaaacta----------cataccttgtaccgatgatatgcgtcgtcggct |
207 |
Q |
| |
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|||||||||||||||||||||||| ||| || | ||| | | |||||||||| ||||||||||||||| ||||| |||||| ||| |
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| T |
25047355 |
tctatcatgactctaaatatatgtcaca-----gttctctatacatttgcaaaactataaattggaccataccttgtaccgactatatgagtcgtcagct |
25047449 |
T |
|
| Q |
208 |
acatctccattacctccatctcttattttttctgcaagccatttcatttatatatatga |
266 |
Q |
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||||||||| ||| || |||| |||||||||||||| ||||||||||| ||| |||||| |
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| T |
25047450 |
acatctccagtacttctatcttttattttttctgcaggccatttcattaataaatatga |
25047508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 97
Target Start/End: Original strand, 25169155 - 25169222
Alignment:
| Q |
30 |
tctagaccaagcaatggaaaatctgtaagcatccatattcaaatcctttatgattccaatatcttcct |
97 |
Q |
| |
|
||||||||||| |||||||||||||| ||||||| |||| |||||| ||||| |||| |||||||| |
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| T |
25169155 |
tctagaccaagatatggaaaatctgtatgcatccaagttcatatccttcatgataccaacatcttcct |
25169222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 97
Target Start/End: Original strand, 25180943 - 25181010
Alignment:
| Q |
30 |
tctagaccaagcaatggaaaatctgtaagcatccatattcaaatcctttatgattccaatatcttcct |
97 |
Q |
| |
|
||||||||||| |||||||||||||| ||||||| |||| |||||| ||||| |||| |||||||| |
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| T |
25180943 |
tctagaccaagatatggaaaatctgtatgcatccaagttcatatccttcatgataccaacatcttcct |
25181010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 97
Target Start/End: Complemental strand, 25252099 - 25252032
Alignment:
| Q |
30 |
tctagaccaagcaatggaaaatctgtaagcatccatattcaaatcctttatgattccaatatcttcct |
97 |
Q |
| |
|
||||||||||| |||||||||||||| ||||||| |||| |||||| ||||| |||| |||||||| |
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| T |
25252099 |
tctagaccaagatatggaaaatctgtatgcatccaagttcatatccttcatgataccaacatcttcct |
25252032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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