View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14484_high_30 (Length: 397)
Name: NF14484_high_30
Description: NF14484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14484_high_30 |
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Alignment Details
Target: chr5 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 14 - 379
Target Start/End: Original strand, 35357638 - 35358005
Alignment:
| Q |
14 |
ataatactatccggatactttaattgagtggagatcctcttgattatgtacttgcatgtatgaatatacatttctaaaactaataacattaattagacat |
113 |
Q |
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| T |
35357638 |
ataatactatcaggatactttaattgagtggagatcctcttgattatgtacttgcatgtat------acatttctaaaactaataacattaattagacat |
35357731 |
T |
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| Q |
114 |
ttaaacatctaaagttttattatcgaagctctccatt--------tatatcattgccttcctttatttctttttatgtgaagattctaacttaagtctat |
205 |
Q |
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| T |
35357732 |
ttaaacatctaaagttttattatcgaagctctccatttaatcatttatatcattgccttcctttatttctttttatgtgaagattctaacttaagtctat |
35357831 |
T |
|
| Q |
206 |
ttcacaggcttcaattcgcttcacaggattttcgattgtgttgcttggactgtcatcactgcttaatgatgtagctttctactgggtagttcttatattc |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35357832 |
ttcacaggcttcaattcgcttcacaggattttcgattgtgttgcttggactgtcatcactgcttaatgatgtagctttctactgggtagttcttatattc |
35357931 |
T |
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| Q |
306 |
ttcttgcaaagaggtccaatttctcctctttcagatgaaataactgaacctgatgacaagtatgttgctcttgg |
379 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35357932 |
ttcttgcaaagaggtccaatttctcctctttcagatgaaataactgaacctgatgacaagtatgttgctcttgg |
35358005 |
T |
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