View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14484_high_31 (Length: 395)
Name: NF14484_high_31
Description: NF14484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14484_high_31 |
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Alignment Details
Target: chr4 (Bit Score: 140; Significance: 3e-73; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 189 - 375
Target Start/End: Original strand, 29252575 - 29252762
Alignment:
| Q |
189 |
aagaatactcataaggtttggtgagactgttgaagaaaa-ctcatcctagagaggcaccatataaatactcacagacatagcaaagaatgcttagttagt |
287 |
Q |
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| T |
29252575 |
aagaatactcataaggcttggagaggttattgaagaaaaactcatcctagagaggcaccatatcaaagctcacagacatagcaaagaatgtttagttagt |
29252674 |
T |
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| Q |
288 |
gaattaagttcatctcaagggaaagaaaagtcagtcactttgttaggggtagactcgattggttgatagtgaaccagtataatatcat |
375 |
Q |
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| T |
29252675 |
gaattaagttcatctcaagggaaggaaaagtcagtcactttgttaggggtagactcgattggttgatagtgaaccagtataatatcat |
29252762 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 115 - 178
Target Start/End: Original strand, 29252257 - 29252320
Alignment:
| Q |
115 |
tgtatctcgagcttaattgtgaatccactcaaaagagtgtcattatatcatgttgtaaatcgat |
178 |
Q |
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| T |
29252257 |
tgtatctcgagcttaattgtgaatccactcaaaagagtgtcattatatcatgttgtaaatcgat |
29252320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 175 - 232
Target Start/End: Original strand, 29252529 - 29252586
Alignment:
| Q |
175 |
cgatttgcttcagaaagaatactcataaggtttggtgagactgttgaagaaaactcat |
232 |
Q |
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| T |
29252529 |
cgatttgcttcagaaagaatactcataaggtttggtgagactgttgaagaatactcat |
29252586 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 29252142 - 29252182
Alignment:
| Q |
1 |
ctgatgtatggtatcatgagatagttctacggaacatccat |
41 |
Q |
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| T |
29252142 |
ctgatgtatggtatcatgagatagttctacggaacatccat |
29252182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 118 - 175
Target Start/End: Complemental strand, 40123186 - 40123129
Alignment:
| Q |
118 |
atctcgagcttaattgtgaatccactcaaaagagtgtcattatatcatgttgtaaatc |
175 |
Q |
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| T |
40123186 |
atctcgagcttaattgtaaatccactcataagggtgtcattagatcgtgttctaaatc |
40123129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 8 - 41
Target Start/End: Complemental strand, 50052363 - 50052330
Alignment:
| Q |
8 |
atggtatcatgagatagttctacggaacatccat |
41 |
Q |
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| T |
50052363 |
atggtatcatgagatagttctacggaacatccat |
50052330 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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