View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14484_high_32 (Length: 389)

Name: NF14484_high_32
Description: NF14484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14484_high_32
NF14484_high_32
[»] chr5 (23 HSPs)
chr5 (58-318)||(35701753-35702013)
chr5 (126-299)||(29716233-29716406)
chr5 (71-312)||(31913911-31914152)
chr5 (58-320)||(36180026-36180289)
chr5 (126-313)||(5650133-5650321)
chr5 (70-250)||(3032644-3032825)
chr5 (130-298)||(7124247-7124416)
chr5 (127-250)||(4840885-4841009)
chr5 (127-195)||(31561428-31561496)
chr5 (127-190)||(16497370-16497433)
chr5 (137-197)||(15285953-15286013)
chr5 (127-195)||(16801173-16801241)
chr5 (207-313)||(33892266-33892372)
chr5 (207-272)||(25869335-25869400)
chr5 (137-298)||(29759222-29759382)
chr5 (127-191)||(36195837-36195901)
chr5 (126-272)||(37797517-37797663)
chr5 (223-313)||(21238207-21238297)
chr5 (200-272)||(36195726-36195798)
chr5 (230-272)||(32236946-32236988)
chr5 (227-272)||(16497330-16497375)
chr5 (137-250)||(16548594-16548707)
chr5 (137-246)||(21490195-21490304)
[»] chr2 (27 HSPs)
chr2 (207-321)||(13327628-13327742)
chr2 (88-211)||(13328875-13328996)
chr2 (126-291)||(31846505-31846670)
chr2 (135-272)||(18726975-18727112)
chr2 (80-276)||(42242350-42242546)
chr2 (128-316)||(34342844-34343031)
chr2 (133-272)||(28546285-28546423)
chr2 (83-250)||(40830187-40830353)
chr2 (128-275)||(43304630-43304777)
chr2 (127-239)||(37810300-37810412)
chr2 (126-276)||(9731541-9731698)
chr2 (70-185)||(37654841-37654956)
chr2 (126-275)||(2307910-2308057)
chr2 (172-290)||(38295049-38295167)
chr2 (185-323)||(45160603-45160740)
chr2 (127-272)||(24026370-24026515)
chr2 (88-184)||(38295180-38295276)
chr2 (206-272)||(13908627-13908693)
chr2 (126-247)||(15224592-15224714)
chr2 (128-197)||(30850956-30851025)
chr2 (230-313)||(33263460-33263543)
chr2 (230-312)||(38411938-38412020)
chr2 (172-267)||(37790330-37790423)
chr2 (56-155)||(2103793-2103892)
chr2 (137-191)||(43618047-43618101)
chr2 (230-299)||(2104333-2104402)
chr2 (230-299)||(32241817-32241886)
[»] chr6 (11 HSPs)
chr6 (80-299)||(16439243-16439462)
chr6 (126-282)||(24202701-24202857)
chr6 (80-267)||(31975116-31975303)
chr6 (80-299)||(31534437-31534656)
chr6 (130-272)||(6788940-6789083)
chr6 (144-250)||(28900212-28900317)
chr6 (128-197)||(32567760-32567829)
chr6 (127-221)||(21010341-21010435)
chr6 (138-250)||(2607540-2607652)
chr6 (207-272)||(31995709-31995774)
chr6 (130-272)||(1462786-1462932)
[»] chr4 (33 HSPs)
chr4 (80-299)||(29509392-29509611)
chr4 (81-299)||(24965822-24966039)
chr4 (136-298)||(50517701-50517863)
chr4 (80-299)||(46862275-46862494)
chr4 (126-313)||(23670921-23671109)
chr4 (138-282)||(26490624-26490767)
chr4 (122-250)||(41206798-41206926)
chr4 (80-319)||(12754858-12755099)
chr4 (55-266)||(22480154-22480365)
chr4 (80-299)||(32890428-32890647)
chr4 (126-282)||(29469719-29469875)
chr4 (71-272)||(21305775-21305976)
chr4 (207-317)||(41469636-41469746)
chr4 (137-247)||(55165960-55166070)
chr4 (139-211)||(40317098-40317170)
chr4 (139-211)||(40327172-40327244)
chr4 (137-272)||(872101-872236)
chr4 (230-313)||(9973424-9973507)
chr4 (126-197)||(33139400-33139471)
chr4 (207-299)||(8562522-8562614)
chr4 (126-272)||(42936980-42937126)
chr4 (143-250)||(53573720-53573827)
chr4 (231-318)||(56423415-56423502)
chr4 (185-318)||(25013988-25014121)
chr4 (213-272)||(29965893-29965952)
chr4 (200-275)||(33140995-33141070)
chr4 (230-313)||(40163318-40163401)
chr4 (82-188)||(26955804-26955910)
chr4 (230-272)||(54561801-54561843)
chr4 (230-319)||(26449200-26449289)
chr4 (134-187)||(35517960-35518013)
chr4 (233-313)||(6486761-6486841)
chr4 (213-317)||(23170115-23170219)
[»] chr1 (35 HSPs)
chr1 (84-299)||(47370900-47371114)
chr1 (80-256)||(3593788-3593964)
chr1 (138-259)||(28403319-28403441)
chr1 (113-313)||(25254126-25254325)
chr1 (138-272)||(49452417-49452551)
chr1 (126-312)||(42303712-42303900)
chr1 (138-316)||(42637476-42637653)
chr1 (80-267)||(32759441-32759629)
chr1 (128-247)||(35176657-35176776)
chr1 (128-250)||(19863491-19863612)
chr1 (80-250)||(48965896-48966065)
chr1 (126-273)||(5208670-5208818)
chr1 (130-272)||(4005927-4006070)
chr1 (126-299)||(8147919-8148092)
chr1 (137-313)||(27257574-27257750)
chr1 (145-312)||(49236324-49236481)
chr1 (126-197)||(8122546-8122617)
chr1 (130-272)||(18246940-18247083)
chr1 (130-272)||(51107762-51107905)
chr1 (140-221)||(226499-226580)
chr1 (71-263)||(40431771-40431964)
chr1 (126-299)||(2292598-2292776)
chr1 (130-249)||(9174450-9174570)
chr1 (147-263)||(50038019-50038135)
chr1 (207-318)||(34019650-34019761)
chr1 (126-299)||(11578472-11578645)
chr1 (126-188)||(15927653-15927715)
chr1 (126-267)||(43854997-43855138)
chr1 (126-299)||(1242655-1242826)
chr1 (137-274)||(49971046-49971183)
chr1 (174-299)||(15928237-15928362)
chr1 (127-216)||(46042468-46042557)
chr1 (137-191)||(35193691-35193745)
chr1 (255-319)||(3593976-3594040)
chr1 (213-313)||(34750995-34751095)
[»] chr3 (19 HSPs)
chr3 (80-272)||(7436915-7437107)
chr3 (143-249)||(4962090-4962196)
chr3 (126-250)||(33693866-33693990)
chr3 (81-299)||(43173446-43173664)
chr3 (80-256)||(49458917-49459095)
chr3 (126-299)||(53836514-53836687)
chr3 (137-249)||(25050173-25050285)
chr3 (127-238)||(9030497-9030608)
chr3 (128-266)||(1666480-1666618)
chr3 (126-313)||(22488419-22488612)
chr3 (126-272)||(49296670-49296816)
chr3 (130-272)||(8599515-8599658)
chr3 (109-184)||(27162896-27162971)
chr3 (80-241)||(21385878-21386037)
chr3 (153-267)||(30237961-30238075)
chr3 (164-299)||(24063932-24064066)
chr3 (200-299)||(27163020-27163119)
chr3 (149-250)||(25932026-25932126)
chr3 (230-313)||(53644755-53644838)
[»] chr7 (20 HSPs)
chr7 (127-306)||(1253853-1254032)
chr7 (80-194)||(42813708-42813822)
chr7 (137-313)||(42611126-42611302)
chr7 (126-272)||(5771541-5771685)
chr7 (80-319)||(23017535-23017774)
chr7 (80-316)||(21486688-21486924)
chr7 (126-250)||(43172673-43172797)
chr7 (126-244)||(16710119-16710237)
chr7 (126-244)||(17684355-17684473)
chr7 (127-264)||(6269025-6269163)
chr7 (137-266)||(33496781-33496910)
chr7 (137-313)||(27149293-27149469)
chr7 (123-299)||(31175099-31175283)
chr7 (126-261)||(37915467-37915602)
chr7 (207-272)||(21024612-21024677)
chr7 (207-282)||(14731746-14731821)
chr7 (255-317)||(14742201-14742263)
chr7 (137-267)||(26201214-26201344)
chr7 (185-267)||(38910998-38911079)
chr7 (207-272)||(35314075-35314140)
[»] chr8 (18 HSPs)
chr8 (80-299)||(18984882-18985101)
chr8 (126-299)||(24082787-24082958)
chr8 (80-275)||(42423757-42423952)
chr8 (126-275)||(12737437-12737587)
chr8 (143-276)||(8029207-8029340)
chr8 (128-256)||(6387274-6387402)
chr8 (80-246)||(27974349-27974515)
chr8 (80-246)||(28031618-28031784)
chr8 (127-292)||(4870503-4870668)
chr8 (126-243)||(27876479-27876596)
chr8 (126-243)||(28016660-28016777)
chr8 (80-313)||(41394415-41394648)
chr8 (127-259)||(33177259-33177391)
chr8 (80-299)||(12521737-12521954)
chr8 (84-190)||(27869376-27869482)
chr8 (80-313)||(3007135-3007369)
chr8 (137-246)||(24067408-24067517)
chr8 (184-272)||(26619984-26620072)
[»] scaffold0024 (1 HSPs)
scaffold0024 (126-292)||(136120-136286)
[»] scaffold0573 (1 HSPs)
scaffold0573 (144-250)||(9477-9582)
[»] scaffold0002 (1 HSPs)
scaffold0002 (130-272)||(16195-16338)
[»] scaffold0013 (1 HSPs)
scaffold0013 (80-221)||(89836-89977)
[»] scaffold0118 (1 HSPs)
scaffold0118 (130-193)||(38393-38456)


Alignment Details
Target: chr5 (Bit Score: 105; Significance: 2e-52; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 58 - 318
Target Start/End: Original strand, 35701753 - 35702013
Alignment:
Q  58 ttatggttatgtgagttaactctgtattttgatgttaagttatgcacaatgctttattttggtcattgggtatactttgcctttataattaagtcatatt 157  Q
    ||||| || |||||||||| | |||||||  ||| ||||||  ||| || || |||||||||| |||||||||||||||||||| |||||| ||||||||    
T  35701753 ttatgattttgtgagttaattttgtatttaaatgctaagttgagcataacgcattattttggtgattgggtatactttgcctttttaattaggtcatatt 35701852  T
Q  158 ttacattattgacatatttacaatattatattagcttataattgtcatgtatatgataatttttctacaatattaattttaggtaaactcgtatgaattt 257  Q
    || ||||||| || |||||||| |||||||||||||||||  |||||||||||| ||||||||| || ||| |||||||||||||||||||||  | |||    
T  35701853 ttgcattattaacctatttacagtattatattagcttatatatgtcatgtatataataatttttttataattttaattttaggtaaactcgtacaagttt 35701952  T
Q  258 acgagtcgagattacctagataaaattagttgaggcaaactcgtgagtggtaaaactttgc 318  Q
    |||||| ||| |||||||  |||||  |||||||| ||||||  |||| ||||||| ||||    
T  35701953 acgagttgagtttacctaagtaaaacgagttgaggtaaactctcgagttgtaaaaccttgc 35702013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 126 - 299
Target Start/End: Complemental strand, 29716406 - 29716233
Alignment:
Q  126 ggtatactttgcctttataattaagtcatattttacattattgacatatttacaatattatattagcttataattgtcatgtatatgataatttttctac 225  Q
    |||||| ||||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||||||  ||||||  |||| |||| |||| |||    
T  29716406 ggtataatttgcctttgtaattaagtcatattttgcactattgacatatttacaatattatattagcttatatatgtcatccatataataaattttatac 29716307  T
Q  226 aatattaattttaggtaaactcgtatgaatttacgagtcgagattacctagataaaattagttgaggcaaactc 299  Q
    ||| ||||||||||||||||||||| |   |  ||||||||| ||||||||  ||||  |||||||| ||||||    
T  29716306 aattttaattttaggtaaactcgtacgggatctcgagtcgagtttacctaggcaaaacgagttgaggtaaactc 29716233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 71 - 312
Target Start/End: Original strand, 31913911 - 31914152
Alignment:
Q  71 agttaactctgtattttgatgttaagttatgcacaatgctttattttggtcattgggtatactttgcctttataattaagtcatattttacattattgac 170  Q
    |||||| | |||||||||||| |||||||  || ||  ||||||| ||||  ||  |||||||||| |||||||||||||||||||||| || |||||||    
T  31913911 agttaattttgtattttgatgctaagttaaacataactctttattatggtggttatgtatactttgtctttataattaagtcatattttgcactattgac 31914010  T
Q  171 atatttacaatattatattagcttataattgtcatgtatatgataatttttctacaatattaattttaggtaaactcgtatgaatttacgagtcgagatt 270  Q
     ||||| |||||||||||||||||| |  | |||||||||| |||| |||| || ||| ||||||||||||| ||||||| || |||| || ||||| ||    
T  31914011 ttatttgcaatattatattagcttacatatatcatgtatataataaattttatataattttaattttaggtatactcgtacgagtttatgattcgagttt 31914110  T
Q  271 acctagataaaattagttgaggcaaactcgtgagtggtaaaa 312  Q
    || ||| |||||  |||||||| ||||||  |||| ||||||    
T  31914111 acataggtaaaacgagttgaggtaaactctcgagttgtaaaa 31914152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 58 - 320
Target Start/End: Original strand, 36180026 - 36180289
Alignment:
Q  58 ttatggttatgtgagttaactctgtattttgatgttaagttatgcacaatgctttattttggtcattgggtatactttgccttt-ataattaagtcatat 156  Q
    |||||||| ||  |||||| | ||||| |||||| ||||||  ||| || |||||||| | || ||  |||||||||||||||| |||||||||||||||    
T  36180026 ttatggttttgcaagttaattttgtatcttgatgctaagttgagcataacgctttattatagtgatcaggtatactttgccttttataattaagtcatat 36180125  T
Q  157 tttacattattgacatatttacaatattatattagcttataattgtcatgtatatgataatttttctacaatattaattttaggtaaactcgtatgaatt 256  Q
    ||| || |||||||||||||||||||||||||||||| |      ||||||||||||||| |||| || ||| |||||||||| |||| || ||  | ||    
T  36180126 tttgcactattgacatatttacaatattatattagctcacgtacatcatgtatatgataaattttatataattttaattttagataaaatcatacaagtt 36180225  T
Q  257 tacgagtcgagattacctagataaaattagttgaggcaaactcgtgagtggtaaaactttgcta 320  Q
    ||||||| ||| |||||||  |||||| |||||||| ||||||  |||| ||||| ||||||||    
T  36180226 tacgagttgagtttacctaagtaaaatgagttgaggtaaactctcgagttgtaaagctttgcta 36180289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 126 - 313
Target Start/End: Complemental strand, 5650321 - 5650133
Alignment:
Q  126 ggtatactttgcctttataattaagtc-atattttacattattgacatatttacaatattatattagcttataattgtcatgtatatgataatttttcta 224  Q
    ||||| |||||| |||||||||||||| |||||||  ||||||||  | |||||||||||||||||||||| |  ||||||  |||| |||| || | ||    
T  5650321 ggtatgctttgcatttataattaagtctatattttttattattgatctttttacaatattatattagcttacatatgtcattcatataataaattgtata 5650222  T
Q  225 caatattaattttaggtaaactcgtatgaatttacgagtcgagattacctagataaaattagttgaggcaaactcgtgagtggtaaaac 313  Q
    |||| | ||||||||||||||||||| || |||| |||||||| |||||||| |||||  |||||||| |||||| ||||| |||||||    
T  5650221 caatttcaattttaggtaaactcgtacgagtttatgagtcgagtttacctaggtaaaacgagttgaggtaaactcttgagtagtaaaac 5650133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 70 - 250
Target Start/End: Original strand, 3032644 - 3032825
Alignment:
Q  70 gagttaactctgtattttgatgttaagttatgcacaatgctttattttggtcattgggtatactttgcctttataattaagtcatattttacattattga 169  Q
    ||||||| | |||||||||||  ||||||  ||| ||  ||||||| ||||  ||||||||| ||||  |||||||||||||||| |||| ||  |||||    
T  3032644 gagttaattttgtattttgattctaagttgagcataacactttattatggtagttgggtatattttgtatttataattaagtcattttttgcacaattga 3032743  T
Q  170 catatttacaata-ttatattagcttataattgtcatgtatatgataatttttctacaatattaattttaggtaaactcgta 250  Q
    |||||||| |||| ||||||||||||| |  |||||||||||| |||| |||| || ||| || ||||||||||||||||||    
T  3032744 catatttataatatttatattagcttacatatgtcatgtatataataaattttatataattttgattttaggtaaactcgta 3032825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 130 - 298
Target Start/End: Complemental strand, 7124416 - 7124247
Alignment:
Q  130 tactttgcctttataattaagtc-atattttacattattgacatatttacaatattatattagcttataattgtcatgtatatgataatttttctacaat 228  Q
    |||||||| |||||||||||||| ||||||| || ||||||  | |||||| |||||||||||||||||  ||||||| |||| |||| || | || |||    
T  7124416 tactttgcatttataattaagtctatatttttcactattgatctttttacagtattatattagcttatatatgtcatgcatataataaattgtataaaat 7124317  T
Q  229 attaattttaggtaaactcgtatgaatttacgagtcgagattacctagataaaattagttgaggcaaact 298  Q
     | ||||||||||||||||||  || ||||||| ||||| |||||||| |||||  |||||||| |||||    
T  7124316 ttcaattttaggtaaactcgtgcgagtttacgattcgagtttacctaggtaaaacgagttgaggtaaact 7124247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 127 - 250
Target Start/End: Complemental strand, 4841009 - 4840885
Alignment:
Q  127 gtatactttgccttt-ataattaagtcatattttacattattgacatatttacaatattatattagcttataattgtcatgtatatgataatttttctac 225  Q
    ||||||||||||||| |||||||||||||||||| || ||||||| |||||||||||||||||||||| | |  | |||||||||| |||| || | ||     
T  4841009 gtatactttgccttttataattaagtcatattttgcactattgacctatttacaatattatattagctcacatatatcatgtatataataaattgtatat 4840910  T
Q  226 aatattaattttaggtaaactcgta 250  Q
    ||| |||||||||| ||||||||||    
T  4840909 aattttaattttagttaaactcgta 4840885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 127 - 195
Target Start/End: Complemental strand, 31561496 - 31561428
Alignment:
Q  127 gtatactttgcctttataattaagtcatattttacattattgacatatttacaatattatattagctta 195  Q
    |||||||||| ||||||||||||||||||||||  ||||||||| ||||| ||||||||||||||||||    
T  31561496 gtatactttgtctttataattaagtcatattttgtattattgacctattttcaatattatattagctta 31561428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 127 - 190
Target Start/End: Complemental strand, 16497433 - 16497370
Alignment:
Q  127 gtatactttgcctttataattaagtcatattttacattattgacatatttacaatattatatta 190  Q
    |||||||||| ||||||||||||||||||| || ||||||| ||||||||||||||||||||||    
T  16497433 gtatactttgtctttataattaagtcatatcttgcattattaacatatttacaatattatatta 16497370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 137 - 197
Target Start/End: Complemental strand, 15286013 - 15285953
Alignment:
Q  137 cctttataattaagtcatattttacattattgacatatttacaatattatattagcttata 197  Q
    ||||| ||||||||||||||||| || ||||||| ||||||||||||||||||||| ||||    
T  15286013 cctttgtaattaagtcatattttgcaatattgacctatttacaatattatattagcatata 15285953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 127 - 195
Target Start/End: Original strand, 16801173 - 16801241
Alignment:
Q  127 gtatactttgcctttataattaagtcatattttacattattgacatatttacaatattatattagctta 195  Q
    ||||||||||| ||||||||||| ||||||||  || ||||||| ||||| ||||||||||||||||||    
T  16801173 gtatactttgcatttataattaaatcatatttcgcaatattgacctatttgcaatattatattagctta 16801241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 207 - 313
Target Start/End: Complemental strand, 33892372 - 33892266
Alignment:
Q  207 tatatgataatttttctacaatattaattttaggtaaactcgtatgaatttacgagtcgagattacctagataaaattagttgaggcaaactcgtgagtg 306  Q
    ||||| |||| |||| || ||| ||||||||||||||||||||| || ||||||| ||||| |||| ||| |||||  |||||||| ||||||  ||||     
T  33892372 tatataataaattttatataattttaattttaggtaaactcgtacgagtttacgattcgagtttacatagctaaaacgagttgaggtaaactctcgagtt 33892273  T
Q  307 gtaaaac 313  Q
    |||||||    
T  33892272 gtaaaac 33892266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 207 - 272
Target Start/End: Original strand, 25869335 - 25869400
Alignment:
Q  207 tatatgataatttttctacaatattaattttaggtaaactcgtatgaatttacgagtcgagattac 272  Q
    ||||| |||| |||| || ||| ||||||||||||||||||||| |||||||||||||||| ||||    
T  25869335 tatataataaattttatataattttaattttaggtaaactcgtacgaatttacgagtcgagtttac 25869400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 137 - 298
Target Start/End: Original strand, 29759222 - 29759382
Alignment:
Q  137 cctttataattaagtcatattttacattattgacatatttacaatattatattagcttataattgtcatgtatatgataatttttctacaatattaattt 236  Q
    ||||||||||  ||||||||||| || ||||||  |||||||||||||||||||| ||| |  |||||| || || ||||  ||| |  ||| |||||||    
T  29759222 cctttataatatagtcatattttgcactattgaactatttacaatattatattagtttacatatgtcatttaaataataa-atttatttaattttaattt 29759320  T
Q  237 taggtaaactcgtatgaatttacgagtcgagattacctagataaaattagttgaggcaaact 298  Q
    ||| |||||||||| || ||  ||||||||| |||||||   ||||| |||||||| |||||    
T  29759321 tagataaactcgtacgatttctcgagtcgagtttacctaagcaaaatgagttgaggtaaact 29759382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 127 - 191
Target Start/End: Complemental strand, 36195901 - 36195837
Alignment:
Q  127 gtatactttgcctttataattaagtcatattttacattattgacatatttacaatattatattag 191  Q
    |||||||||| ||||| ||||| ||||||||||||||||||||| |||||  |||||||| ||||    
T  36195901 gtatactttgtctttacaattatgtcatattttacattattgacgtatttgtaatattatgttag 36195837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 126 - 272
Target Start/End: Complemental strand, 37797663 - 37797517
Alignment:
Q  126 ggtatactttgcctttataattaagtc-atattttacattattgacatatttacaatattatattagcttataattgtcatgtatatgataatttttcta 224  Q
    |||||||||||| ||||||| |||||| ||||||| || ||||||  | |||||| ||||||||||||||| |  ||| ||| |||| |||| || | ||    
T  37797663 ggtatactttgcatttataagtaagtctatatttttcactattgatctttttacagtattatattagcttacatatgt-atgcatataataaattgtata 37797565  T
Q  225 caatattaattttaggtaaactcgtatgaatttacgagtcgagattac 272  Q
     ||| | ||||||||||||||||||| || |||| || ||||| ||||    
T  37797564 aaatttcaattttaggtaaactcgtacgagtttatgattcgagtttac 37797517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 223 - 313
Target Start/End: Complemental strand, 21238297 - 21238207
Alignment:
Q  223 tacaatattaattttaggtaaactcgtatgaatttacgagtcgagattacctagataaaattagttgaggcaaactcgtgagtggtaaaac 313  Q
    |||||| ||||||||||||||||||||| || ||||||| || || |||| ||| |||||  |||||||| ||||||  |||| |||||||    
T  21238297 tacaattttaattttaggtaaactcgtacgattttacgattcaagtttacatagttaaaacgagttgaggtaaactctcgagttgtaaaac 21238207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 200 - 272
Target Start/End: Complemental strand, 36195798 - 36195726
Alignment:
Q  200 tgtcatgtatatgataatttttctacaatattaattttaggtaaactcgtatgaatttacgagtcgagattac 272  Q
    |||||||||||| |||| |||| || ||| ||||||||||  ||||| |||||||||||| ||||||| ||||    
T  36195798 tgtcatgtatataataaattttatataattttaattttagacaaacttgtatgaatttacaagtcgagtttac 36195726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 272
Target Start/End: Complemental strand, 32236988 - 32236946
Alignment:
Q  230 ttaattttaggtaaactcgtatgaatttacgagtcgagattac 272  Q
    ||||||||||||||||||||| || ||||||||||||| ||||    
T  32236988 ttaattttaggtaaactcgtacgagtttacgagtcgagtttac 32236946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 272
Target Start/End: Complemental strand, 16497375 - 16497330
Alignment:
Q  227 atattaattttaggtaaactcgtatgaatttacgagtcgagattac 272  Q
    |||||||||||||||||||||||| || |||| |||||||| ||||    
T  16497375 atattaattttaggtaaactcgtacgagtttatgagtcgagtttac 16497330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 250
Target Start/End: Complemental strand, 16548707 - 16548594
Alignment:
Q  137 cctttataattaagtcatattttacattattgacatatttacaatattatattagcttataattgtcatgtatatgataatttttctacaatattaattt 236  Q
    |||||| |||| ||||||||||| ||  ||||   |||||||||||||||||||| ||| |  || |||||| || |||| |||| |  ||| |||||||    
T  16548707 cctttaaaatttagtcatattttgcacgattggactatttacaatattatattagtttacatatgccatgtaaataataaattttatttaattttaattt 16548608  T
Q  237 taggtaaactcgta 250  Q
    |||||||| |||||    
T  16548607 taggtaaattcgta 16548594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 246
Target Start/End: Original strand, 21490195 - 21490304
Alignment:
Q  137 cctttataattaagtcatattttacattattgacatatttacaatattatattagcttataattgtcatgtatatgataatttttctacaatattaattt 236  Q
    ||||||||||| ||||||||||| || |||||   |||||  ||||||||||||| |||||  |||||| || || |||| |||| |  ||| |||||||    
T  21490195 cctttataatttagtcatattttgcactattggactatttgtaatattatattagtttatatatgtcatataaataataaattttatttaattttaattt 21490294  T
Q  237 taggtaaact 246  Q
    ||| ||||||    
T  21490295 tagataaact 21490304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 95; Significance: 2e-46; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 207 - 321
Target Start/End: Complemental strand, 13327742 - 13327628
Alignment:
Q  207 tatatgataatttttctacaatattaattttaggtaaactcgtatgaatttacgagtcgagattacctagataaaattagttgaggcaaactcgtgagtg 306  Q
    ||||||||||||||| |||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| ||||| ||||||||||||||    
T  13327742 tatatgataatttttatacaatattaattttaggtaaactcgtacgagtttacgagtcgagattacctagataaaattaattgagacaaactcgtgagtg 13327643  T
Q  307 gtaaaactttgctat 321  Q
    |||||||||||||||    
T  13327642 gtaaaactttgctat 13327628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 88 - 211
Target Start/End: Complemental strand, 13328996 - 13328875
Alignment:
Q  88 gatgttaagttatgcacaatgctttattttggtcattgggtatactttgcctttataattaagtcatattttacattattgacatatttacaatattata 187  Q
    |||| ||||||||||||  ||||||||||||||||||||||||||||||| |||| |||||||||||  |||||||||||||||||||||||||||||||    
T  13328996 gatgctaagttatgcacggtgctttattttggtcattgggtatactttgcttttacaattaagtcat--tttacattattgacatatttacaatattata 13328899  T
Q  188 ttagcttataattgtcatgtatat 211  Q
    |||| ||||||||||||| |||||    
T  13328898 ttagtttataattgtcatatatat 13328875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 126 - 291
Target Start/End: Complemental strand, 31846670 - 31846505
Alignment:
Q  126 ggtatactttgcctttataattaagtcatattttacattattgacatatttacaatattatattagcttataattgtcatgtatatgataatttttctac 225  Q
    |||||| ||| ||||||||||||||||||||||| || ||||||| |||||||||||||||||||| |||||  ||||||| |||| |||| |||| ||     
T  31846670 ggtatagtttacctttataattaagtcatattttgcactattgacctatttacaatattatattagtttatatatgtcatgcatataataaattttatat 31846571  T
Q  226 aatattaattttaggtaaactcgtatgaatttacgagtcgagattacctagataaaattagttgag 291  Q
    ||| |||| |||||||||||||||| || ||  | ||||||| ||||||||  ||||| |||||||    
T  31846570 aattttaaatttaggtaaactcgtacgagttctcaagtcgagtttacctaggcaaaatgagttgag 31846505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 135 - 272
Target Start/End: Complemental strand, 18727112 - 18726975
Alignment:
Q  135 tgcctttataattaagtcatattttacattattgacatatttacaatattatattagcttataattgtcatgtatatgataatttttctacaatattaat 234  Q
    ||||||| ||||||||||||||||| || |||||||  ||||||||||||||||||||||||| |||||||  |||| |||| |||| || ||| |||||    
T  18727112 tgcctttgtaattaagtcatattttgcactattgactaatttacaatattatattagcttatatttgtcatccatataataaattttatataattttaat 18727013  T
Q  235 tttaggtaaactcgtatgaatttacgagtcgagattac 272  Q
    |||||||||||||||| || ||  ||||||||| ||||    
T  18727012 tttaggtaaactcgtacgagttctcgagtcgagtttac 18726975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 80 - 276
Target Start/End: Original strand, 42242350 - 42242546
Alignment:
Q  80 tgtattttgatgttaagttatgcacaatgctttattttggtcattgggtatactttgcctttataattaagtcatattttacattattgacatatttaca 179  Q
    |||||||||||| ||||||  ||| || | |||||| ||||  ||  ||||| ||||  ||| ||||||||||||||||| || ||||||| ||||||||    
T  42242350 tgtattttgatgataagttgagcataaggttttattatggtagtttagtataatttgtatttctaattaagtcatattttgcactattgacctatttaca 42242449  T
Q  180 atattatattagcttataattgtcatgtatatgataatttttctacaatattaattttaggtaaactcgtatgaatttacgagtcgagattacctag 276  Q
    ||||||||||||||||||  ||||||| |||| |||| ||||  | ||| |||||||||||| |||||||| || ||  ||||||||| ||||||||    
T  42242450 atattatattagcttatatatgtcatgcatataataaattttacataattttaattttaggtcaactcgtacgagttctcgagtcgagtttacctag 42242546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 128 - 316
Target Start/End: Original strand, 34342844 - 34343031
Alignment:
Q  128 tatactttgcctttataattaagtcatattttacattattgacatatttacaatattatattagcttataattgtcatgtatatgataatttttctacaa 227  Q
    |||| |||| |||| |||||||||||||||||||| |||| || |||||||||||||||||||| |||||  |||||||||||| |||| |||| || ||    
T  34342844 tataatttgtctttgtaattaagtcatattttacaatattcacctatttacaatattatattagtttatatatgtcatgtatataataaattttatataa 34342943  T
Q  228 tattaattttaggtaaactcgtatgaatttacgagtcgagattacctagataaaattagttgaggcaaactcgtgagtggtaaaacttt 316  Q
    | |||| |||||||||| ||||| || ||   |||||||| |||||||   ||||  |||||||| ||||||  |||| ||||||||||    
T  34342944 ttttaa-tttaggtaaattcgtacgagttcttgagtcgagtttacctaagcaaaacgagttgaggtaaactctcgagtcgtaaaacttt 34343031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 133 - 272
Target Start/End: Original strand, 28546285 - 28546423
Alignment:
Q  133 tttgcctttataattaagtcatattttacattattgacatatttacaatattatattagcttataattgtcatgtatatgataatttttctacaatatta 232  Q
    |||||||||| ||||||||||||||||||||||||||| ||||| ||||||| |||||||||||   ||| | |||||| |||| |||| || ||| |||    
T  28546285 tttgcctttagaattaagtcatattttacattattgacctatttgcaatattctattagcttatgtatgttaggtatataataaattttatataatttta 28546384  T
Q  233 attttaggtaaactcgtatgaatttacgagtcgagattac 272  Q
    |||||||||||||| |||  | ||||||||||||| ||||    
T  28546385 attttaggtaaact-gtactattttacgagtcgagtttac 28546423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 83 - 250
Target Start/End: Original strand, 40830187 - 40830353
Alignment:
Q  83 attttgatgttaagttatgcacaatgctttattttggtcattgggtatactttgcctttataattaagtcatattttacattattgacatatttacaata 182  Q
    ||||||||| ||||||  ||| |||| |||||| || |  || |||||| ||||| ||| ||||||||||| |||||||| ||||||| |||||||||||    
T  40830187 attttgatgctaagttgagcataatgttttattatgatagtttggtataatttgc-tttgtaattaagtcacattttacactattgacctatttacaata 40830285  T
Q  183 ttatattagcttataattgtcatgtatatgataatttttctacaatattaattttaggtaaactcgta 250  Q
    |||||| ||||||||  ||||||| |||| |||| ||||  | ||| ||||||||||||||| |||||    
T  40830286 ttatatgagcttatatatgtcatgcatatcataaattttaaataattttaattttaggtaaattcgta 40830353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 128 - 275
Target Start/End: Complemental strand, 43304777 - 43304630
Alignment:
Q  128 tatactttgcctttataattaagtcatattttacattattgacatatttacaatattatattagcttataattgtcatgtatatgataatttttctacaa 227  Q
    |||||||||| ||||||||||||||||||||| || | ||||  |||||||||||||||||||| ||  || ||||||| |||| |||| || | || ||    
T  43304777 tatactttgcatttataattaagtcatattttgcactgttgatctatttacaatattatattagtttgcaaatgtcatgcatataataaattatatagaa 43304678  T
Q  228 tattaattttaggtaaactcgtatgaatttacgagtcgagattaccta 275  Q
    | ||||||||||||||||| |||| |||||  |||| ||| |||||||    
T  43304677 ttttaattttaggtaaacttgtataaatttttgagttgagtttaccta 43304630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 127 - 239
Target Start/End: Complemental strand, 37810412 - 37810300
Alignment:
Q  127 gtatactttgcctttataattaagtcatattttacattattgacatatttacaatattatattagcttataattgtcatgtatatgataatttttctaca 226  Q
    |||||| ||| ||||||||||||||||||||||||| ||||||| ||| ||||||||||||||||| || |  |||||||| ||| |||| |||| || |    
T  37810412 gtatacgttgtctttataattaagtcatattttacaatattgacctatatacaatattatattagcatacatatgtcatgtgtataataaattttatata 37810313  T
Q  227 atattaattttag 239  Q
    || ||||||||||    
T  37810312 attttaattttag 37810300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 126 - 276
Target Start/End: Original strand, 9731541 - 9731698
Alignment:
Q  126 ggtatactttgcctttataattaagtcatattttacattattgacatatttacaatattatattagcttataattgtc-------atgtatatgataatt 218  Q
    |||||| ||||| ||| ||||||||||||||||| || ||||||| |||||||||||| |||||||||||||  ||||       ||| |||| |||| |    
T  9731541 ggtataatttgcttttgtaattaagtcatattttgcactattgacctatttacaatatcatattagcttatatatgtcatgcattatgcatataataaat 9731640  T
Q  219 tttctacaatattaattttaggtaaactcgtatgaatttacgagtcgagattacctag 276  Q
    ||| || ||| ||||||||||||||||||||| || ||  ||||||||| ||||||||    
T  9731641 tttatataattttaattttaggtaaactcgtacgagttctcgagtcgagtttacctag 9731698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 70 - 185
Target Start/End: Complemental strand, 37654956 - 37654841
Alignment:
Q  70 gagttaactctgtattttgatgttaagttatgcacaatgctttattttggtcattgggtatactttgcctttataattaagtcatattttacattattga 169  Q
    ||||||| | |||||||||||||||||||  ||| |||  |||||  ||||  || |||||||||||| |||||||||||||||||||||  | ||||||    
T  37654956 gagttaattttgtattttgatgttaagttgagcataatattttataatggtggtttggtatactttgcatttataattaagtcatattttgtactattga 37654857  T
Q  170 catatttacaatatta 185  Q
      ||||||||||||||    
T  37654856 actatttacaatatta 37654841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 126 - 275
Target Start/End: Complemental strand, 2308057 - 2307910
Alignment:
Q  126 ggtatactttgcctttataattaagtcatattttacattattgacatatttacaatattatattagcttataattgtcatgtatatgataatttttctac 225  Q
    |||||| ||| ||||| |||||||| |||||||| || ||||||| ||||||||||||||||||| ||||||  || |  | |||| |||| |||| ||     
T  2308057 ggtataatttacctttgtaattaagacatattttgcactattgacctatttacaatattatattaacttatacatggc--gcatataataaattttatat 2307960  T
Q  226 aatattaattttaggtaaactcgtatgaatttacgagtcgagattaccta 275  Q
    ||| ||| || |||||||||||||| || ||  ||||||||| |||||||    
T  2307959 aattttagttgtaggtaaactcgtaagagttatcgagtcgagtttaccta 2307910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 172 - 290
Target Start/End: Complemental strand, 38295167 - 38295049
Alignment:
Q  172 tatttacaatattatattagcttataattgtcatgtatatgataatttttctacaatattaattttaggtaaactcgtatgaatttacgagtcgagatta 271  Q
    |||||||||||||| |||||||||||  | ||||| |||| |||| |||| || ||| |||||||||||||||||||||  | ||  ||||||||| | |    
T  38295167 tatttacaatattaaattagcttatatatatcatgcatataataaattttatataattttaattttaggtaaactcgtacaagttctcgagtcgagttaa 38295068  T
Q  272 cctagataaaattagttga 290  Q
    |||||| ||||| ||||||    
T  38295067 cctagacaaaatgagttga 38295049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 185 - 323
Target Start/End: Complemental strand, 45160740 - 45160603
Alignment:
Q  185 atattagcttataattgtcatgtatatgataatttttctacaatattaattttaggtaaactcgtatgaatttacgagtcgagattacctagataaaatt 284  Q
    ||||||||||| |  ||| || ||||| |||| |||| || ||| ||||||||||||||||||||| || ||||||| ||||| |||| ||| ||||||     
T  45160740 atattagcttacatatgttatatatataataaattttatataat-ttaattttaggtaaactcgtacgagtttacgattcgagtttacatagctaaaatg 45160642  T
Q  285 agttgaggcaaactcgtgagtggtaaaactttgctatat 323  Q
    |||||||| ||| ||  |||| ||||||||||| |||||    
T  45160641 agttgaggtaaattctcgagttgtaaaactttgatatat 45160603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 127 - 272
Target Start/End: Original strand, 24026370 - 24026515
Alignment:
Q  127 gtatactttgcctttataattaagtcatattttacattattgacatatttacaatattatattagcttataattgtcatgtatatgataatttttctaca 226  Q
    |||||||||| ||||||||||  |||||||||| |  ||||  | |||||||| |||||| |||||||| |  ||||||||||||  ||| |||| || |    
T  24026370 gtatactttgtctttataattgtgtcatattttgcgctattagcctatttacagtattatgttagcttacatatgtcatgtatatagtaaattttatata 24026469  T
Q  227 atattaattttaggtaaactcgtatgaatttacgagtcgagattac 272  Q
     | |||| ||||||||| ||||||||  ||||||||||||| ||||    
T  24026470 tttttaactttaggtaatctcgtatgggtttacgagtcgagtttac 24026515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 88 - 184
Target Start/End: Complemental strand, 38295276 - 38295180
Alignment:
Q  88 gatgttaagttatgcacaatgctttattttggtcattgggtatactttgcctttataattaagtcatattttacattattgacatatttacaatatt 184  Q
    |||||||||||  ||| |||| |||||| ||||  || |||||| |||| |||| ||||||||||||||||| ||| |||||| |||||||||||||    
T  38295276 gatgttaagttgagcataatgttttattatggtagtttggtataatttgtctttgtaattaagtcatattttgcatcattgacctatttacaatatt 38295180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 206 - 272
Target Start/End: Original strand, 13908627 - 13908693
Alignment:
Q  206 gtatatgataatttttctacaatattaattttaggtaaactcgtatgaatttacgagtcgagattac 272  Q
    |||||| |||| |||| || ||| ||||||||||||||||||||| |||||||||||||||| ||||    
T  13908627 gtatataataaattttatataattttaattttaggtaaactcgtacgaatttacgagtcgagtttac 13908693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 126 - 247
Target Start/End: Original strand, 15224592 - 15224714
Alignment:
Q  126 ggtatactttgcctttataattaagtc-atattttacattattgacatatttacaatattatattagcttataattgtcatgtatatgataatttttcta 224  Q
    |||||||||||| ||||||| |||||| ||||||| ||  |||||  | |||||||||||||||||||||| |  ||||||| |||| |||| || | ||    
T  15224592 ggtatactttgcatttataaataagtctatatttttcacaattgatctttttacaatattatattagcttacatatgtcatgcatataataaattgtata 15224691  T
Q  225 caatattaattttaggtaaactc 247  Q
     ||| | ||||||||||||||||    
T  15224692 aaatttcaattttaggtaaactc 15224714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 128 - 197
Target Start/End: Original strand, 30850956 - 30851025
Alignment:
Q  128 tatactttgcctttataattaagtcatattttacattattgacatatttacaatattatattagcttata 197  Q
    |||| |||| |||| ||||||||||||||||| || |||||||  ||||| |||||||||||||||||||    
T  30850956 tatattttgtctttgtaattaagtcatattttgcactattgacccatttataatattatattagcttata 30851025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 230 - 313
Target Start/End: Original strand, 33263460 - 33263543
Alignment:
Q  230 ttaattttaggtaaactcgtatgaatttacgagtcgagattacctagataaaattagttgaggcaaactcgtgagtggtaaaac 313  Q
    ||||||||||||||| |||||||| ||||||| ||||| |||| ||| |||||  |||||||| ||||||  |||| |||||||    
T  33263460 ttaattttaggtaaattcgtatgagtttacgattcgagtttacatagctaaaacaagttgaggtaaactctcgagttgtaaaac 33263543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 230 - 312
Target Start/End: Complemental strand, 38412020 - 38411938
Alignment:
Q  230 ttaattttaggtaaactcgtatgaatttacgagtcgagattacctagataaaattagttgaggcaaactcgtgagtggtaaaa 312  Q
    ||||||||||||||||||||| || ||||||| ||||| |||| ||| |||||  |||||||| ||||||  |||| ||||||    
T  38412020 ttaattttaggtaaactcgtacgagtttacgattcgagtttacatagctaaaacgagttgaggtaaactctcgagttgtaaaa 38411938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 172 - 267
Target Start/End: Original strand, 37790330 - 37790423
Alignment:
Q  172 tatttacaatattatattagcttataattgtcatgtatatgataatttttctacaatattaattttaggtaaactcgtatgaatttacgagtcgag 267  Q
    |||||||| |||||||||||  ||||  |||||| ||||| ||||||||  || ||| ||| ||||| ||||||||||| || |||||||||||||    
T  37790330 tatttacagtattatattagtatata--tgtcatctatataataattttaatataattttacttttacgtaaactcgtacgattttacgagtcgag 37790423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 56 - 155
Target Start/End: Original strand, 2103793 - 2103892
Alignment:
Q  56 atttatggttatgtgagttaactctgtattttgatgttaagttatgcacaatgctttattttggtcattgggtatactttgcctttataattaagtcata 155  Q
    ||||||| || || ||||||| | |||||||||||| ||||||   || |||| |||||| ||||  || | ||||||||| ||||||||||||||||||    
T  2103793 atttatgattttgcgagttaattttgtattttgatgctaagttgaacataatgttttattatggtggtttgatatactttgtctttataattaagtcata 2103892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 137 - 191
Target Start/End: Original strand, 43618047 - 43618101
Alignment:
Q  137 cctttataattaagtcatattttacattattgacatatttacaatattatattag 191  Q
    ||||||||||| |||||||||||||| |||||   ||||||||| ||||||||||    
T  43618047 cctttataatttagtcatattttacactattggactatttacaacattatattag 43618101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 299
Target Start/End: Original strand, 2104333 - 2104402
Alignment:
Q  230 ttaattttaggtaaactcgtatgaatttacgagtcgagattacctagataaaattagttgaggcaaactc 299  Q
    |||||||||| |||||||||| ||||||||||||| |  ||| |||| |||||  ||||||| |||||||    
T  2104333 ttaattttagataaactcgtacgaatttacgagtcaaatttatctaggtaaaacaagttgagacaaactc 2104402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 299
Target Start/End: Complemental strand, 32241886 - 32241817
Alignment:
Q  230 ttaattttaggtaaactcgtatgaatttacgagtcgagattacctagataaaattagttgaggcaaactc 299  Q
    ||||||||||||||| ||||| || ||  ||||||||| |||||||| |||||  |||||||| ||||||    
T  32241886 ttaattttaggtaaattcgtacgagttctcgagtcgagtttacctaggtaaaacgagttgaggtaaactc 32241817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 84; Significance: 8e-40; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 80 - 299
Target Start/End: Original strand, 16439243 - 16439462
Alignment:
Q  80 tgtattttgatgttaagttatgcacaatgctttattttggtcattgggtatactttgcctttataattaagtcatattttacattattgacatatttaca 179  Q
    |||||||||||| ||||||  ||| |||| |||||| ||||  || |||||| |||  |||| |||||||||||||||||||| ||||||| |||||| |    
T  16439243 tgtattttgatgctaagttgagcataatgttttattatggtagtttggtataatttatctttgtaattaagtcatattttacactattgacctatttata 16439342  T
Q  180 atattatattagcttataattgtcatgtatatgataatttttctacaatattaattttaggtaaactcgtatgaatttacgagtcgagattacctagata 279  Q
     |||||||||||||||||  |||||||||| | |||| |||| || ||| ||||||||||||||||||||| || ||  ||||||||| ||||||||| |    
T  16439343 ttattatattagcttatatatgtcatgtatgtaataaattttatataattttaattttaggtaaactcgtacgagttctcgagtcgagtttacctagaca 16439442  T
Q  280 aaattagttgaggcaaactc 299  Q
    |||  |||||||| ||||||    
T  16439443 aaacgagttgaggtaaactc 16439462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 126 - 282
Target Start/End: Original strand, 24202701 - 24202857
Alignment:
Q  126 ggtatactttgcctttataattaagtcatattttacattattgacatatttacaatattatattagcttataattgtcatgtatatgataatttttctac 225  Q
    |||||| ||| | ||| |||||||||||||||||||| ||||||| |||||| |||||||||||| ||||||  ||||||| |||| |||| |||| |      
T  24202701 ggtataatttccatttctaattaagtcatattttacactattgacctatttataatattatattaacttatatatgtcatgcatataataaattttattt 24202800  T
Q  226 aatattaattttaggtaaactcgtatgaatttacgagtcgagattacctagataaaa 282  Q
    ||| ||||||||||||||||||||| ||||| || ||||||| |||||||| |||||    
T  24202801 aattttaattttaggtaaactcgtacgaattcacaagtcgagtttacctaggtaaaa 24202857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 80 - 267
Target Start/End: Complemental strand, 31975303 - 31975116
Alignment:
Q  80 tgtattttgatgttaagttatgcacaatgctttattttggtcattgggtatactttgcctttataattaagtcatattttacattattgacatatttaca 179  Q
    |||||||||||| ||||||  ||| |||| |||||| ||||  || | |||| ||||||||| ||||||||||||||||| || |||||| |||||||||    
T  31975303 tgtattttgatgctaagttgagcataatgttttattatggtagtttgatataatttgcctttgtaattaagtcatatttttcactattgatatatttaca 31975204  T
Q  180 atattatattagcttataattgtcatgtatatgataatttttctacaatattaattttaggtaaactcgtatgaatttacgagtcgag 267  Q
    ||||||||||| ||||||  |||| || |||| |||| |||| || ||| ||||||||||||||| ||||| || ||  |||||||||    
T  31975203 atattatattatcttatatatgtcttgcatataataaattttatataattttaattttaggtaaaatcgtacgagttctcgagtcgag 31975116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 80 - 299
Target Start/End: Complemental strand, 31534656 - 31534437
Alignment:
Q  80 tgtattttgatgttaagttatgcacaatgctttattttggtcattgggtatactttgcctttataattaagtcatattttacattattgacatatttaca 179  Q
    |||||||||||| ||||||  ||| |||| |||||| ||||  || ||| || ||||||||  ||||||||||||||||| ||  || ||| ||||||||    
T  31534656 tgtattttgatgctaagttgagcataatgttttattatggtagtttggtgtaatttgccttagtaattaagtcatattttgcaccatcgacttatttaca 31534557  T
Q  180 atattatattagcttataattgtcatgtatatgataatttttctacaatattaattttaggtaaactcgtatgaatttacgagtcgagattacctagata 279  Q
    |||||||||||||||| |  | || || |||| |||| |||| || ||| ||||||||||||||||||||| || ||   |||||||| ||||| ||| |    
T  31534556 atattatattagcttaaatatatcttgcatataataaattttatataattttaattttaggtaaactcgtacgagttcttgagtcgagtttacccagaca 31534457  T
Q  280 aaattagttgaggcaaactc 299  Q
    |||  | |||||| ||||||    
T  31534456 aaacgatttgaggtaaactc 31534437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 130 - 272
Target Start/End: Original strand, 6788940 - 6789083
Alignment:
Q  130 tactttgcctttataattaagtc-atattttacattattgacatatttacaatattatattagcttataattgtcatgtatatgataatttttctacaat 228  Q
    |||||||| |||||||||||||| ||||||| || ||||||  | |||||| ||||||||||||||| |  ||||||| |||| |||| || | || |||    
T  6788940 tactttgcatttataattaagtctatatttttcactattgatctttttacagtattatattagcttacatatgtcatgcatataataaattgtataaaat 6789039  T
Q  229 attaattttaggtaaactcgtatgaatttacgagtcgagattac 272  Q
     | ||||||||||||||||||| || ||||||| ||||| ||||    
T  6789040 ttcaattttaggtaaactcgtacgagtttacgattcgagtttac 6789083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 144 - 250
Target Start/End: Complemental strand, 28900317 - 28900212
Alignment:
Q  144 aattaagtcatattttacattattgacatatttacaatattatattagcttataattgtcatgtatatgataatttttctacaatattaattttaggtaa 243  Q
    |||||||||||||||| || ||||||| ||||||||||||||||||||||||||  |||| || |||| | || |||| || ||| |||| |||||||||    
T  28900317 aattaagtcatatttttcactattgacctatttacaatattatattagcttatatatgtcttgcatataagaaattttatataattttaa-tttaggtaa 28900219  T
Q  244 actcgta 250  Q
    |||||||    
T  28900218 actcgta 28900212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 128 - 197
Target Start/End: Complemental strand, 32567829 - 32567760
Alignment:
Q  128 tatactttgcctttataattaagtcatattttacattattgacatatttacaatattatattagcttata 197  Q
    |||| ||||||||| ||||||||||||||||| || |||| || ||||||||||||||||||||||||||    
T  32567829 tatattttgcctttgtaattaagtcatattttgcactatttacttatttacaatattatattagcttata 32567760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 127 - 221
Target Start/End: Complemental strand, 21010435 - 21010341
Alignment:
Q  127 gtatactttgcctttataattaagtcatattttacattattgacatatttacaatattatattagcttataattgtcatgtatatgataattttt 221  Q
    |||||||||| | |||||||||||||||||||| || ||||||  ||||| |||||| |||||||||||||  ||| ||||||||| ||| ||||    
T  21010435 gtatactttgtcattataattaagtcatattttgcactattgatctatttgcaatatcatattagcttatatatgttatgtatatggtaaatttt 21010341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 138 - 250
Target Start/End: Original strand, 2607540 - 2607652
Alignment:
Q  138 ctttataattaagtcatattttacattattgacatatttacaatattatattagcttataattgtcatgtatatgataatttttctacaatattaatttt 237  Q
    ||||||||||||| | |||||| || ||||||| ||||||||||||||| || |||||||  |||  || |||| |||| |||| || | | ||||||||    
T  2607540 ctttataattaagccgtatttttcactattgacctatttacaatattatgttggcttatatatgttttgaatataataaattttatatagttttaatttt 2607639  T
Q  238 aggtaaactcgta 250  Q
    |||||||||||||    
T  2607640 aggtaaactcgta 2607652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 207 - 272
Target Start/End: Complemental strand, 31995774 - 31995709
Alignment:
Q  207 tatatgataatttttctacaatattaattttaggtaaactcgtatgaatttacgagtcgagattac 272  Q
    ||||| |||| |||| || ||| ||||||||||||||||||||| || ||||||||||||| ||||    
T  31995774 tatataataaattttatataattttaattttaggtaaactcgtacgagtttacgagtcgagtttac 31995709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 130 - 272
Target Start/End: Complemental strand, 1462932 - 1462786
Alignment:
Q  130 tactttgcctttataattaagtc-atattttacattattgacatatttacaatattatatta---gcttataattgtcatgtatatgataatttttctac 225  Q
    |||||||| |||||||||||||| ||||||| || ||||||  | |||||| ||||||||||   ||||| |  ||||||| |||| |||| || | ||     
T  1462932 tactttgcatttataattaagtctatatttttcactattgatctttttacagtattatattattagcttacatatgtcatgcatataataaattgtataa 1462833  T
Q  226 aatattaattttaggtaaactcgtatgaatttacgagtcgagattac 272  Q
    ||| | |||||||||||||||||||  | ||||||| ||||| ||||    
T  1462832 aatttcaattttaggtaaactcgtactagtttacgattcgagtttac 1462786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 80; Significance: 2e-37; HSPs: 33)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 80 - 299
Target Start/End: Complemental strand, 29509611 - 29509392
Alignment:
Q  80 tgtattttgatgttaagttatgcacaatgctttattttggtcattgggtatactttgcctttataattaagtcatattttacattattgacatatttaca 179  Q
    |||||||||||| ||||||  ||| |||| |||||| ||||  || |||||| |||||| || ||||||||| ||||||| || ||||||| ||||||||    
T  29509611 tgtattttgatgctaagttgagcataatgttttattatggtagtttggtataatttgcccttgtaattaagttatattttgcactattgacctatttaca 29509512  T
Q  180 atattatattagcttataattgtcatgtatatgataatttttctacaatattaattttaggtaaactcgtatgaatttacgagtcgagattacctagata 279  Q
    ||| |||||||||||| |  |||| || |||| |||| |||  || ||| ||||||||||||||||||||| || ||  ||||||||| ||||||||| |    
T  29509511 ataatatattagcttacatatgtcttgcatataataaatttaatataattttaattttaggtaaactcgtacgagttctcgagtcgagtttacctagaca 29509412  T
Q  280 aaattagttgaggcaaactc 299  Q
    ||||||||||||| ||||||    
T  29509411 aaattagttgaggtaaactc 29509392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 81 - 299
Target Start/End: Complemental strand, 24966039 - 24965822
Alignment:
Q  81 gtattttgatgttaagttatgcacaatgctttattttggtcattgggtatactttgcctttataattaagtcatattttacattattgacatatttacaa 180  Q
    ||||||||||||||||||  ||| || | |||||| ||||  || |||||| |||| | || ||||||||||||||||| || ||||||| |||||||||    
T  24966039 gtattttgatgttaagttgagcataacgttttattatggtagtttggtataatttgtcgttgtaattaagtcatattttgcactattgacctatttacaa 24965940  T
Q  181 tattatattagcttataattgtcatgtatatgataatttttctacaatattaattttaggtaaactcgtatgaatttacgagtcgagattacctagataa 280  Q
    |||||||||||| ||||  ||||||| |||| |||| |||| ||  || |||||||||| ||||||||||||| ||  ||||||||| |||||||| |||    
T  24965939 tattatattagc-tatatatgtcatgcatataataaattttatattattttaattttagataaactcgtatgagttctcgagtcgagtttacctaggtaa 24965841  T
Q  281 aattagttgaggcaaactc 299  Q
    ||  |||||||| ||||||    
T  24965840 aacgagttgaggtaaactc 24965822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 136 - 298
Target Start/End: Original strand, 50517701 - 50517863
Alignment:
Q  136 gcctttataattaagtcatattttacattattgacatatttacaatattatattagcttataattgtcatgtatatgataatttttctacaatattaatt 235  Q
    |||||| ||||||||||||||||| || ||||||  |||||| |||||||||||||||||||  |||| || ||||||||| |||| || ||| ||||||    
T  50517701 gcctttgtaattaagtcatattttgcactattgatctatttataatattatattagcttatatatgtcttgcatatgataaattttatataattttaatt 50517800  T
Q  236 ttaggtaaactcgtatgaatttacgagtcgagattacctagataaaattagttgaggcaaact 298  Q
    |||| ||||||| ||||| ||  ||||||||| ||||||||  ||||| |||||||| |||||    
T  50517801 ttagataaactcatatgagttctcgagtcgagtttacctaggcaaaatgagttgaggtaaact 50517863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 80 - 299
Target Start/End: Complemental strand, 46862494 - 46862275
Alignment:
Q  80 tgtattttgatgttaagttatgcacaatgctttattttggtcattgggtatactttgcctttataattaagtcatattttacattattgacatatttaca 179  Q
    |||||||||||| ||||||  | | |||| |||||| ||||  || | |||| ||||||||| |||||||||||||||||  ||| ||||| ||||||||    
T  46862494 tgtattttgatgctaagttgagtataatgttttattatggtagtttgatataatttgcctttgtaattaagtcatattttgtattgttgacctatttaca 46862395  T
Q  180 atattatattagcttataattgtcatgtatatgataatttttctacaatattaattttaggtaaactcgtatgaatttacgagtcgagattacctagata 279  Q
    ||||||||||||||||||  |||| || ||||  ||| ||||||  ||| ||||||||||||||||||||  || ||  ||| ||||  ||||||||| |    
T  46862394 atattatattagcttatatatgtcttgcatatagtaaattttctgtaattttaattttaggtaaactcgtcagagttctcgaatcgaatttacctagaca 46862295  T
Q  280 aaattagttgaggcaaactc 299  Q
    |||  |||||||| ||||||    
T  46862294 aaacgagttgaggtaaactc 46862275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 126 - 313
Target Start/End: Complemental strand, 23671109 - 23670921
Alignment:
Q  126 ggtatactttgcctttataattaagtc-atattttacattattgacatatttacaatattatattagcttataattgtcatgtatatgataatttttcta 224  Q
    |||||||||| | |||||||||||||| ||||||| ||  |||||  | |||||||||||||||||||||| |  ||||||| |||| |||| || | ||    
T  23671109 ggtatactttacatttataattaagtctatatttttcacaattgatctttttacaatattatattagcttacatatgtcatggatataataaattgtata 23671010  T
Q  225 caatattaattttaggtaaactcgtatgaatttacgagtcgagattacctagataaaattagttgaggcaaactcgtgagtggtaaaac 313  Q
     ||| | |||| ||||||||||||||||| ||||||||||||| |||  ||| |||||| |||||||| ||||||  |||| |||||||    
T  23671009 aaatttcaattctaggtaaactcgtatgagtttacgagtcgagtttatataggtaaaatgagttgaggtaaactctcgagttgtaaaac 23670921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 138 - 282
Target Start/End: Complemental strand, 26490767 - 26490624
Alignment:
Q  138 ctttataattaagtcatattttacattattgacatatttacaatattatattagcttataattgtcatgtatatgataatttttctacaatattaatttt 237  Q
    |||| |||||||||||||||||||| |||| || |||| ||||||| |||||||||||||  ||||||| |||| ||||  ||| || ||| ||||||||    
T  26490767 ctttgtaattaagtcatattttacactattaacctatt-acaatatcatattagcttatatatgtcatgcatataataaactttatataattttaatttt 26490669  T
Q  238 aggtaaactcgtatgaatttacgagtcgagattacctagataaaa 282  Q
    |||||||||||||||| ||  ||| ||||| ||||||| ||||||    
T  26490668 aggtaaactcgtatgagttctcgaatcgagtttacctaaataaaa 26490624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 122 - 250
Target Start/End: Complemental strand, 41206926 - 41206798
Alignment:
Q  122 attgggtatactttgcctttataattaagtcatattttacattattgacatatttacaatattatattagcttataattgtcatgtatatgataattttt 221  Q
    |||||||||||| || | ||||||| ||||||||||||| | |||||||||||||||||||||||||||||||| |  |||||||||||| |||| || |    
T  41206926 attgggtatactctgtcattataatcaagtcatattttataatattgacatatttacaatattatattagcttacatatgtcatgtatataataaattgt 41206827  T
Q  222 ctacaatattaattttaggtaaactcgta 250  Q
      | ||| ||||| ||| |||||||||||    
T  41206826 acataattttaatattaagtaaactcgta 41206798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 80 - 319
Target Start/End: Original strand, 12754858 - 12755099
Alignment:
Q  80 tgtattttgatgttaagttatgcacaatgctttattttggtcattgggtatactttgcctttataattaagtcatattttacattattgacatatttaca 179  Q
    ||||||||||||||| |||  ||  || | |||||| ||||  || |||||| |||||||||  |||||||||||||||| || ||||||| ||||||||    
T  12754858 tgtattttgatgttaggttgagcgtaacgttttattatggtagtttggtataatttgcctttgaaattaagtcatattttgcactattgacctatttaca 12754957  T
Q  180 atattatattagcttataat--tgtcatgtatatgataatttttctacaatattaattttaggtaaactcgtatgaatttacgagtcgagattacctaga 277  Q
    ||||||||||| ||||||    || |||| |||  |||| |||| || ||| ||||||||||||||||||||| ||  |  ||||||||| |||||||      
T  12754958 atattatattaccttatatacatggcatgcatacaataaattttatataattttaattttaggtaaactcgtacgaggtctcgagtcgagtttacctaag 12755057  T
Q  278 taaaattagttgaggcaaactcgtgagtggtaaaactttgct 319  Q
     ||||  |||||||| ||||||  |||| ||||||| |||||    
T  12755058 caaaacgagttgaggtaaactctcgagttgtaaaacattgct 12755099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 55 - 266
Target Start/End: Original strand, 22480154 - 22480365
Alignment:
Q  55 tatttatggttatgtgagttaactctgtattttgatgttaagttatgcacaatgctttattttggtcattgggtatactttgcctttataattaagtcat 154  Q
    |||||||| || || | ||||| | |||||||||||| ||||||  ||| |||| ||||||  |||  |||  ||||||||| |||||||||||||||||    
T  22480154 tatttatgattttgcgtgttaattttgtattttgatgataagttgagcataatgttttattacggtagttgtatatactttgtctttataattaagtcat 22480253  T
Q  155 attttacattattgacatatttacaata-ttatattagcttataattgtcatgtatatgataatttttctacaatattaattttaggtaaactcgtatga 253  Q
    ||||| ||  |||||||||||||||||| ||||||| ||||| |  ||||||||||||  |||  ||| || ||| |||||||||| ||||||  || ||    
T  22480254 attttgcacaattgacatatttacaatatttatattggcttacatatgtcatgtatatagtaa-gtttatataattttaattttagataaactgatacga 22480352  T
Q  254 atttacgagtcga 266  Q
     ||||||||||||    
T  22480353 gtttacgagtcga 22480365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 80 - 299
Target Start/End: Original strand, 32890428 - 32890647
Alignment:
Q  80 tgtattttgatgttaagttatgcacaatgctttattttggtcattgggtatactttgcctttataattaagtcatattttacattattgacatatttaca 179  Q
    |||||||||||| ||||||  ||| |||| |||||| ||||  || |||||| |||| | || ||||||||| ||||||| || ||||||| ||||||||    
T  32890428 tgtattttgatgctaagttgagcataatgttttattatggtagtttggtataatttgtccttgtaattaagttatattttgcactattgacctatttaca 32890527  T
Q  180 atattatattagcttataattgtcatgtatatgataatttttctacaatattaattttaggtaaactcgtatgaatttacgagtcgagattacctagata 279  Q
    ||| |||||||||||| |  | || || |||| |||| |||   | ||| ||||||||||||||||||||| || ||  | ||||||| ||||||| | |    
T  32890528 ataatatattagcttacatatatcttgcatataataaatttaaaataattttaattttaggtaaactcgtacgagttatcaagtcgagtttacctaaaca 32890627  T
Q  280 aaattagttgaggcaaactc 299  Q
    |||  |||||||| ||||||    
T  32890628 aaacgagttgaggtaaactc 32890647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 126 - 282
Target Start/End: Original strand, 29469719 - 29469875
Alignment:
Q  126 ggtatactttgcctttataattaagtc-atattttacattattgacatatttacaatattatattagcttataattgtcatgtatatgataatttttcta 224  Q
    |||||||||||| ||||||| |||||| ||||||| || ||||||  | |||||| ||||||||||||||| |  ||| ||| |||| |||| || | ||    
T  29469719 ggtatactttgcatttataagtaagtctatatttttcactattgatctttttacagtattatattagcttacatatgt-atgcatataataaattgtata 29469817  T
Q  225 caatattaattttaggtaaactcgtatgaatttacgagtcgagattacctagataaaa 282  Q
     ||| | ||||||||||||||||||| || ||||||||||||| ||||||| ||||||    
T  29469818 aaatttcaattttaggtaaactcgtacgagtttacgagtcgagtttacctaaataaaa 29469875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 71 - 272
Target Start/End: Complemental strand, 21305976 - 21305775
Alignment:
Q  71 agttaactctgtattttgatgttaagttatgcacaatgctttattttggtcattgggtatactttgcctttataattaagtcatattttacattattgac 170  Q
    |||||| | |||||||||| | ||||||   |||||  ||||||| |||| |||  |||||||||| ||||||||||| |||||||||| ||  |||| |    
T  21305976 agttaattttgtattttgacgctaagttgaacacaactctttattatggtgattatgtatactttgtctttataattatgtcatatttttcaccattggc 21305877  T
Q  171 atatttacaatattatattagcttataattgtcatgtatatgataatttttctacaatattaattttaggtaaactcgtatgaatttacgagtcgagatt 270  Q
     |||||  ||||||| |||||| || || ||| |||||||| |||| |||| || |||  ||||||| ||||||||| || || |||| |||||||| ||    
T  21305876 ctatttttaatattacattagcatacaaatgttatgtatataataaattttatataatgataattttgggtaaactcatacgagtttatgagtcgagttt 21305777  T
Q  271 ac 272  Q
    ||    
T  21305776 ac 21305775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 207 - 317
Target Start/End: Complemental strand, 41469746 - 41469636
Alignment:
Q  207 tatatgataatttttctacaatattaattttaggtaaactcgtatgaatttacgagtcgagattacctagataaaattagttgaggcaaactcgtgagtg 306  Q
    ||||| |||| |||| || ||| |||||||||||||||||| || || ||||||||||||| |||| ||| |||||  |||||||| ||||||  ||||     
T  41469746 tatataataaattttatataattttaattttaggtaaactcatacgagtttacgagtcgagtttacatagctaaaacgagttgaggtaaactctcgagtt 41469647  T
Q  307 gtaaaactttg 317  Q
    |||||||||||    
T  41469646 gtaaaactttg 41469636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 137 - 247
Target Start/End: Original strand, 55165960 - 55166070
Alignment:
Q  137 cctttataattaagtcatattttacattattgacatatttacaatattatattagcttataattgtcatgtatatgataatttttctacaatattaattt 236  Q
    ||||||||||| |||||||||||| |||||||   |||||||||| ||||||||| |||||  ||||||||| || |||| |||| |  ||| |||||||    
T  55165960 cctttataatttagtcatattttatattattggactatttacaattttatattagtttatatatgtcatgtaaataataaattttatttaattttaattt 55166059  T
Q  237 taggtaaactc 247  Q
    || ||||||||    
T  55166060 taagtaaactc 55166070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 139 - 211
Target Start/End: Complemental strand, 40317170 - 40317098
Alignment:
Q  139 tttataattaagtcatattttacattattgacatatttacaatattatattagcttataattgtcatgtatat 211  Q
    ||||||||||||| ||||||| || ||||||| ||||| |||||||||||||||||| |  ||||||||||||    
T  40317170 tttataattaagttatattttgcactattgacctatttgcaatattatattagcttacatatgtcatgtatat 40317098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 139 - 211
Target Start/End: Complemental strand, 40327244 - 40327172
Alignment:
Q  139 tttataattaagtcatattttacattattgacatatttacaatattatattagcttataattgtcatgtatat 211  Q
    ||||||||||||| ||||||| || ||||||| ||||| |||||||||||||||||| |  ||||||||||||    
T  40327244 tttataattaagttatattttgcactattgacctatttgcaatattatattagcttacatatgtcatgtatat 40327172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 137 - 272
Target Start/End: Original strand, 872101 - 872236
Alignment:
Q  137 cctttataattaagtcatattttacattattgacatatttacaatattatattagcttataattgtcatgtatatgataatttttctacaatattaattt 236  Q
    ||||||||||| ||||||||||| || |||||   |||||||||||||||||||| ||| |  | ||||||| || ||||  ||| |  ||| |||||||    
T  872101 cctttataatttagtcatattttgcactattggactatttacaatattatattagtttacatatctcatgtaaataataaaatttttttaattttaattt 872200  T
Q  237 taggtaaactcgtatgaatttacgagtcgagattac 272  Q
    |||||||||||||| || ||  ||||||||| ||||    
T  872201 taggtaaactcgtacgagttctcgagtcgagtttac 872236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 230 - 313
Target Start/End: Original strand, 9973424 - 9973507
Alignment:
Q  230 ttaattttaggtaaactcgtatgaatttacgagtcgagattacctagataaaattagttgaggcaaactcgtgagtggtaaaac 313  Q
    ||||||||||||||||||||| || |||| |||||||| |||| ||| |||||| |||||||| ||| || ||||| |||||||    
T  9973424 ttaattttaggtaaactcgtacgagtttatgagtcgagtttacatagctaaaatgagttgaggtaaaatcttgagttgtaaaac 9973507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 126 - 197
Target Start/End: Original strand, 33139400 - 33139471
Alignment:
Q  126 ggtatactttgcctttataattaagtcatattttacattattgacatatttacaatattatattagcttata 197  Q
    |||||| ||| ||||| ||||||||||||||||| |||||||||| ||| || ||||||||||||| |||||    
T  33139400 ggtataattttcctttgtaattaagtcatattttgcattattgacctatctataatattatattagtttata 33139471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 207 - 299
Target Start/End: Complemental strand, 8562614 - 8562522
Alignment:
Q  207 tatatgataatttttctacaatattaattttaggtaaactcgtatgaatttacgagtcgagattacctagataaaattagttgaggcaaactc 299  Q
    ||||| |||| |||| || ||| ||||||||||||||||||||| || ||||||| ||||| |||| ||| |||||  |||||||| ||||||    
T  8562614 tatataataaattttatataattttaattttaggtaaactcgtacgagtttacgattcgagtttacatagctaaaacgagttgaggtaaactc 8562522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 126 - 272
Target Start/End: Complemental strand, 42937126 - 42936980
Alignment:
Q  126 ggtatactttgcctttataattaagtc-atattttacattattgacatatttacaatattatattagcttataattgtcatgtatatgataatttttcta 224  Q
    |||||||||||| |||||||||||||| ||||||| || ||||||  | |||||| ||||||||||| ||| |  || |||| |||| |||| || | ||    
T  42937126 ggtatactttgcatttataattaagtctatatttttcactattgatct-tttacagtattatattagtttacatatgccatgcatataataaattgtata 42937028  T
Q  225 caatattaattttaggtaaactcgtatgaatttacgagtcgagattac 272  Q
     ||| | ||||||||||| ||||||| || ||||||| ||||| ||||    
T  42937027 aaatttcaattttaggtagactcgtacgagtttacgattcgagtttac 42936980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 143 - 250
Target Start/End: Complemental strand, 53573827 - 53573720
Alignment:
Q  143 taattaagtcatattttacattattgacatatttacaatattatattagcttataattgtcatgtatatgataatttttctacaatattaattttaggta 242  Q
    ||||||||||||||||| || |||||   |||||||||||||||||||| ||| |  ||||||| |||| |||| || | || ||| ||| || ||||||    
T  53573827 taattaagtcatattttgcactattgttctatttacaatattatattagtttacatatgtcatgcatataataaattgtatataattttatttctaggta 53573728  T
Q  243 aactcgta 250  Q
    ||||||||    
T  53573727 aactcgta 53573720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 231 - 318
Target Start/End: Complemental strand, 56423502 - 56423415
Alignment:
Q  231 taattttaggtaaactcgtatgaatttacgagtcgagattacctagataaaattagttgaggcaaactcgtgagtggtaaaactttgc 318  Q
    |||||||||||||||||||| || ||||||| ||||| |||| ||| |||||  |||||||| ||||||  |||| ||||||| ||||    
T  56423502 taattttaggtaaactcgtacgagtttacgattcgagtttacatagctaaaacgagttgaggtaaactctcgagttgtaaaaccttgc 56423415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 185 - 318
Target Start/End: Original strand, 25013988 - 25014121
Alignment:
Q  185 atattagcttataattgtcatgtatatgataatttttctacaatattaattttaggtaaactcgtatgaatttacgagtcgagattacctagataaaatt 284  Q
    ||||||||||| |  ||| || ||||| |||| |||| || ||| ||||||||||||||||||||| || ||||| | || || |||| ||| |||||      
T  25013988 atattagcttaaatatgttatatatataataaattttatataattttaattttaggtaaactcgtacgagtttacaattcaagtttacatagctaaaacg 25014087  T
Q  285 agttgaggcaaactcgtgagtggtaaaactttgc 318  Q
    |||||||| ||||||  |||| ||||||| ||||    
T  25014088 agttgaggtaaactctcgagttgtaaaaccttgc 25014121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 213 - 272
Target Start/End: Complemental strand, 29965952 - 29965893
Alignment:
Q  213 ataatttttctacaatattaattttaggtaaactcgtatgaatttacgagtcgagattac 272  Q
    |||| |||| || ||| |||||||||||||||||||||  | ||||||||||||||||||    
T  29965952 ataaattttatataattttaattttaggtaaactcgtactagtttacgagtcgagattac 29965893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 200 - 275
Target Start/End: Original strand, 33140995 - 33141070
Alignment:
Q  200 tgtcatgtatatgataatttttctacaatattaattttaggtaaactcgtatgaatttacgagtcgagattaccta 275  Q
    ||||||| |||| |||| |||| || ||| ||||||||||||||||||||| || ||  ||||||||| |||||||    
T  33140995 tgtcatgcatataataaattttatataattttaattttaggtaaactcgtacgagttctcgagtcgagtttaccta 33141070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 230 - 313
Target Start/End: Original strand, 40163318 - 40163401
Alignment:
Q  230 ttaattttaggtaaactcgtatgaatttacgagtcgagattacctagataaaattagttgaggcaaactcgtgagtggtaaaac 313  Q
    |||||||||||||||||| || || ||||||| ||||| |||| ||| |||||  |||||||| ||||||  |||| |||||||    
T  40163318 ttaattttaggtaaactcctacgagtttacgattcgagtttacatagctaaaacgagttgaggtaaactctcgagttgtaaaac 40163401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 188
Target Start/End: Original strand, 26955804 - 26955910
Alignment:
Q  82 tattttgatgttaagttatgcacaatgctttattttggtcattgggtatactttgcctttataattaagtcatattttacattattgacatatttacaat 181  Q
    |||||||||| ||||||  ||| |||| |||||| ||||  || | |||| |||  |||| ||||||||||||||||| || | ||||| |||||||| |    
T  26955804 tattttgatgctaagttgagcataatgttttattatggtagtttgatatattttatctttgtaattaagtcatattttgcacttttgacctatttacact 26955903  T
Q  182 attatat 188  Q
    |||||||    
T  26955904 attatat 26955910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 272
Target Start/End: Original strand, 54561801 - 54561843
Alignment:
Q  230 ttaattttaggtaaactcgtatgaatttacgagtcgagattac 272  Q
    ||||||||||||||||||||| || ||||||||||||| ||||    
T  54561801 ttaattttaggtaaactcgtacgagtttacgagtcgagtttac 54561843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 319
Target Start/End: Original strand, 26449200 - 26449289
Alignment:
Q  230 ttaattttaggtaaactcgtatgaatttacgagtcgagattacctagataaaattagttgaggcaaactcgtgagtggtaaaactttgct 319  Q
    ||||||||||||||||||||| || ||||||| || || |||| ||| |||||  |||||||| |||||   |||| ||||||| |||||    
T  26449200 ttaattttaggtaaactcgtacgagtttacgattcaagtttacatagctaaaacgagttgaggtaaactatcgagttgtaaaaccttgct 26449289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 187
Target Start/End: Complemental strand, 35518013 - 35517960
Alignment:
Q  134 ttgcctttataattaagtcatattttacattattgacatatttacaatattata 187  Q
    |||||||| ||||||||||||||||| || |||| |  ||||||||||||||||    
T  35518013 ttgcctttgtaattaagtcatattttgcactattaatctatttacaatattata 35517960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 233 - 313
Target Start/End: Complemental strand, 6486841 - 6486761
Alignment:
Q  233 attttaggtaaactcgtatgaatttacgagtcgagattacctagataaaattagttgaggcaaactcgtgagtggtaaaac 313  Q
    |||||||||||||||||| || |||| || ||||| |||| ||| |||||  |||||||| ||||||  |||| |||||||    
T  6486841 attttaggtaaactcgtacgagtttatgattcgagtttacatagctaaaacgagttgaggtaaactctcgagttgtaaaac 6486761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 213 - 317
Target Start/End: Complemental strand, 23170219 - 23170115
Alignment:
Q  213 ataatttttctacaatattaattttaggtaaactcgtatgaatttacgagtcgagattacctagataaaattagttgaggcaaactcgtgagtggtaaaa 312  Q
    |||| |||| || ||| ||||||||||||||||| ||| || ||| ||| ||||| |||| ||  |||||  |||||||  |||||| ||||| ||||||    
T  23170219 ataaattttatataattttaattttaggtaaacttgtacgagtttccgattcgagtttacttatgtaaaacgagttgagataaactcttgagttgtaaaa 23170120  T
Q  313 ctttg 317  Q
    |||||    
T  23170119 ctttg 23170115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 80; Significance: 2e-37; HSPs: 35)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 84 - 299
Target Start/End: Complemental strand, 47371114 - 47370900
Alignment:
Q  84 ttttgatgttaagttatgcacaatgctttattttggtcattgggtatactttgcctttataattaagtcatattttacattattgacatatttacaatat 183  Q
    |||||||| ||||||  ||| |||| |||||| ||||  || |||||| |||||| || ||||||||||||||||| |||||||||||||||||||||||    
T  47371114 ttttgatgctaagttgagcataatgttttattatggtagtttggtataatttgccgttttaattaagtcatattttgcattattgacatatttacaatat 47371015  T
Q  184 tatattagcttataattgtcatgtatatgataatttttctacaatattaattttaggtaaactcgtatgaatttacgagtcgagattacctagataaaat 283  Q
    ||||||| | ||||  ||||||| |||| |||| |||| || ||| ||||||||||||||||||||| || ||  ||||||||| ||||||||  ||||     
T  47371014 tatattaac-tatatatgtcatgcatataataaattttatataattttaattttaggtaaactcgtacgagttctcgagtcgagtttacctaggcaaaac 47370916  T
Q  284 tagttgaggcaaactc 299  Q
     |||||||| ||||||    
T  47370915 gagttgaggtaaactc 47370900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 80 - 256
Target Start/End: Original strand, 3593788 - 3593964
Alignment:
Q  80 tgtattttgatgttaagttatgcacaatgctttattttggtcattgggtatactttgcctttataattaagtcatattttacattattgacatatttaca 179  Q
    ||||||||| |||||||||   ||  ||| |||||| ||||  || |||||| ||||||||| |||||||||||||||||  |||||||||  |||||||    
T  3593788 tgtattttggtgttaagttgaacattatgttttattatggtagtttggtataatttgcctttgtaattaagtcatattttgaattattgaccaatttaca 3593887  T
Q  180 atattatattagcttataattgtcatgtatatgataatttttctacaatattaattttaggtaaactcgtatgaatt 256  Q
    ||||||| ||||||||||  ||||||| |||| ||||||||| || ||| |||||||||| ||| |||||| |||||    
T  3593888 atattattttagcttatatatgtcatgcatataataatttttatataattttaattttagataatctcgtacgaatt 3593964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 138 - 259
Target Start/End: Complemental strand, 28403441 - 28403319
Alignment:
Q  138 ctttataattaagtcatattttacattattgacatatttacaatattat-attagcttataattgtcatgtatatgataatttttctacaatattaattt 236  Q
    |||| ||||||||||||||||| || ||||||||||||||||||||||| |||||||||||  ||||||| |||| |||| |||| || ||| |||||||    
T  28403441 ctttgtaattaagtcatattttgcactattgacatatttacaatattataattagcttatatatgtcatgcatataataaattttatataattttaattt 28403342  T
Q  237 taggtaaactcgtatgaatttac 259  Q
    |||||||||||||| || |||||    
T  28403341 taggtaaactcgtacgagtttac 28403319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 113 - 313
Target Start/End: Original strand, 25254126 - 25254325
Alignment:
Q  113 attttggtcattgggtatactttgcctttataattaagtcatattttacattattgacatatttacaatattatattagcttataattgtcatgtatatg 212  Q
    ||||||||  || |||||| | ||||||| ||||||||||||||||| || ||||||| |||||||| |||||||| ||||||||  ||||||| ||||     
T  25254126 attttggtagtttggtataatgtgcctttgtaattaagtcatattttgcaatattgacttatttacagtattatatcagcttatatatgtcatgcatata 25254225  T
Q  213 ataatttttctacaatattaattttaggtaaactcgtatgaatttacgagtcgagattacctagataaaattagttgaggcaaactcgtgagtggtaaaa 312  Q
    |||| |||| || ||| |||| ||||||||||||||||  | ||  ||||||||| |||||||| |||||  |||||| | ||||||  |||| ||||||    
T  25254226 ataaattttatataattttaa-tttaggtaaactcgtacaagttctcgagtcgagtttacctaggtaaaacgagttgaagtaaactctcgagttgtaaaa 25254324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 138 - 272
Target Start/End: Complemental strand, 49452551 - 49452417
Alignment:
Q  138 ctttataattaagtcatattttacattattgacatatttacaatattatattagcttataattgtcatgtatatgataatttttctacaatattaatttt 237  Q
    |||| ||||||||||||||||| || ||||||| ||||||||||||||||||| ||||||  |||| || |||| |||| |||| || ||| ||||||||    
T  49452551 ctttgtaattaagtcatattttgcactattgacctatttacaatattatattaacttatatatgtcctgcatataataaattttatataattttaatttt 49452452  T
Q  238 aggtaaactcgtatgaatttacgagtcgagattac 272  Q
    ||||||||||||| || ||  ||||||||| ||||    
T  49452451 aggtaaactcgtacgagttctcgagtcgagtttac 49452417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 126 - 312
Target Start/End: Complemental strand, 42303900 - 42303712
Alignment:
Q  126 ggtatactttgcctttataattaagtcatattttacattattgacatatttacaatattatattagcttataattgtcatg--tatatgataatttttct 223  Q
    |||||| |||| |||| ||||||||||||||||| || ||||||| ||||||||||||||||||| |||| |  |||||||  ||||| |||| |||| |    
T  42303900 ggtataatttgtctttgtaattaagtcatattttgcactattgacctatttacaatattatattaacttacatatgtcatgcatatataataaattttat 42303801  T
Q  224 acaatattaattttaggtaaactcgtatgaatttacgagtcgagattacctagataaaattagttgaggcaaactcgtgagtggtaaaa 312  Q
    | ||| ||||||||||||||| || || || ||  ||||||||  ||||||| | ||||  |||||||| |||||| ||||| ||||||    
T  42303800 ataattttaattttaggtaaagtcatacgagttctcgagtcgaatttacctaaacaaaacgagttgaggtaaactcttgagttgtaaaa 42303712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 138 - 316
Target Start/End: Complemental strand, 42637653 - 42637476
Alignment:
Q  138 ctttataattaagtcatattttacattattgacatatttacaatattatattagcttataattgtcatgtatatgataatttttctacaatattaatttt 237  Q
    ||||||||| |||| |||||||| | ||||||| |||||  |||||||||||||||||||  |||||||||||| ||||  ||| || ||| ||||||||    
T  42637653 ctttataatcaagttatattttatactattgacctatttgtaatattatattagcttatatatgtcatgtatataataa-atttatataattttaatttt 42637555  T
Q  238 aggtaaactcgtatgaatttacgagtcgagattacctagataaaattagttgaggcaaactcgtgagtggtaaaacttt 316  Q
    |||||||||| || || ||||| | ||||| |||| ||| || ||  |||||||  |||||| ||||| ||||||||||    
T  42637554 aggtaaactcatacgagtttacaattcgagtttacataggtataacgagttgagataaactcttgagttgtaaaacttt 42637476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 80 - 267
Target Start/End: Complemental strand, 32759629 - 32759441
Alignment:
Q  80 tgtattttgatgttaagttatgcacaatgctttattttggtcattgggtatactttgcctttataattaagtcatattttacattattgacatatttaca 179  Q
    |||||||||||| ||||||  ||| || | |||||| ||||  || |||||| ||||||||| |||||||||||||||||  | ||||||| |||||||     
T  32759629 tgtattttgatgctaagtttagcataacgttttattatggtagtttggtataatttgcctttgtaattaagtcatattttgtactattgacctatttacg 32759530  T
Q  180 atattatattagcttataattgtcatgtatatgataatttttcta-caatattaattttaggtaaactcgtatgaatttacgagtcgag 267  Q
    ||||||||||||||||||  | || || |||| |||| |||| ||  ||| || |||||||||||| ||||| |||||  |||||||||    
T  32759529 atattatattagcttatatatatcttgcatataataaattttatattaatttttattttaggtaaattcgtacgaattctcgagtcgag 32759441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 128 - 247
Target Start/End: Complemental strand, 35176776 - 35176657
Alignment:
Q  128 tatactttgcctttataattaagtcatattttacattattgacatatttacaatattatattagcttataattgtcatgtatatgataatttttctacaa 227  Q
    |||| ||||||||| ||||||| ||||||||| || |||| || ||||||||||||||||||||||||||  ||||||| |||| |||| ||||  |  |    
T  35176776 tataatttgcctttgtaattaaatcatattttgcactattaacttatttacaatattatattagcttatatatgtcatgcatatcataaattttggatca 35176677  T
Q  228 tattaattttaggtaaactc 247  Q
    | ||||||||||||||||||    
T  35176676 ttttaattttaggtaaactc 35176657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 128 - 250
Target Start/End: Original strand, 19863491 - 19863612
Alignment:
Q  128 tatactttgcctttataattaagtcatattttacattattgacatatttacaatattatattagcttataattgtcatgtatatgataatttttctacaa 227  Q
    |||| |||| |||| |||||| ||||||||||||| ||||||  |||||||||||||||||||||||||   ||||||| |||| |||| |||| || ||    
T  19863491 tataatttgtctttgtaattatgtcatattttacactattgatctatttacaatattatattagcttatgtatgtcatgcatataataa-ttttatataa 19863589  T
Q  228 tattaattttaggtaaactcgta 250  Q
    | |||||||||| ||||||||||    
T  19863590 ttttaattttagttaaactcgta 19863612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 80 - 250
Target Start/End: Complemental strand, 48966065 - 48965896
Alignment:
Q  80 tgtattttgatgttaagttatgcacaatgctttattttggtcattgggtatactttgcctttataattaagtcatattttacattattgacatatttaca 179  Q
    |||||||||||| ||||||   || |||| |||||| ||||  ||  ||||| ||||||||| ||||||||||||||||| || ||||||  ||||||||    
T  48966065 tgtattttgatgctaagttgaacataatgttttattatggtagtttagtataatttgcctttgtaattaagtcatattttgcactattgatctatttaca 48965966  T
Q  180 atattatattagcttataattgtcatgtatatgataatttttctacaatattaattttaggtaaactcgta 250  Q
    |||||||||||| ||| |  |||| || ||||| ||| |||| || ||| |||||||||||| ||||||||    
T  48965965 atattatattagtttacatatgtcttgcatatg-taaattttatataattttaattttaggttaactcgta 48965896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 126 - 273
Target Start/End: Complemental strand, 5208818 - 5208670
Alignment:
Q  126 ggtatactttgcctttataattaagtc-atattttacattattgacatatttacaatattatattagcttataattgtcatgtatatgataatttttcta 224  Q
    |||||||||||| |||||||||||||| ||||||| || |||| |  | ||||| ||||||||||||||||||  ||||||| | || |||| || | ||    
T  5208818 ggtatactttgcatttataattaagtctatatttttcactattaatctttttacgatattatattagcttatatatgtcatgcacataataaattgtata 5208719  T
Q  225 caatattaattttaggtaaactcgtatgaatttacgagtcgagattacc 273  Q
     ||| | ||||||||||||||||||| || ||||||| ||||| |||||    
T  5208718 aaatttcaattttaggtaaactcgtacgagtttacgattcgagtttacc 5208670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 130 - 272
Target Start/End: Original strand, 4005927 - 4006070
Alignment:
Q  130 tactttgcctttataattaagtc-atattttacattattgacatatttacaatattatattagcttataattgtcatgtatatgataatttttctacaat 228  Q
    |||||||| |||||||||||||| ||||||| || ||||||  | |||||| ||||||||||||||| |  ||||||| |||| |||| || | || |||    
T  4005927 tactttgcatttataattaagtctatatttttcactattgatctttttacagtattatattagcttacatatgtcatgcatataataaattgtataaaat 4006026  T
Q  229 attaattttaggtaaactcgtatgaatttacgagtcgagattac 272  Q
     | ||||||||||||||||||| || ||||||| ||||| ||||    
T  4006027 ttcaattttaggtaaactcgtacgagtttacgattcgagtttac 4006070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 126 - 299
Target Start/End: Original strand, 8147919 - 8148092
Alignment:
Q  126 ggtatactttgcctttataattaagtc-atattttacattattgacatatttacaatattatattagcttataattgtcatgtatatgataatttttcta 224  Q
    |||||||||||| ||||||| |||||| ||||||| || ||||||  | |||||  ||||||||||||||| |  ||| ||| |||| |||| || | ||    
T  8147919 ggtatactttgcatttataagtaagtctatatttttcactattgatctttttacggtattatattagcttacatatgt-atgcatataataaattgtata 8148017  T
Q  225 caatattaattttaggtaaactcgtatgaatttacgagtcgagattacctagataaaattagttgaggcaaactc 299  Q
     ||| | ||||||||||||||||||| || ||||||| ||||| |||||||| |||||  |||||||| ||||||    
T  8148018 aaatttcaattttaggtaaactcgtacgagtttacgattcgagtttacctagctaaaacgagttgaggtaaactc 8148092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 137 - 313
Target Start/End: Complemental strand, 27257750 - 27257574
Alignment:
Q  137 cctttataattaagtcatattttacattatt-gacatatttacaatattatattagcttataattgtcatgtatatgataatttttctacaatattaatt 235  Q
    ||||| ||||| |||||||||||| | |||| ||| |||||||||||||||||||| ||| |  ||||||||| || |||| |||  |  ||| ||||||    
T  27257750 cctttctaatttagtcatattttatactatttgac-tatttacaatattatattagtttagatatgtcatgtaaataataaatttaatttaattttaatt 27257652  T
Q  236 ttaggtaaactcgtatgaatttacgagtcgagattacctagataaaattagttgaggcaaactcgtgagtggtaaaac 313  Q
    ||||||||||||||| || ||  ||||||||| |||| | |||||||  |||||||| ||||||  |||| |||||||    
T  27257651 ttaggtaaactcgtaagagttctcgagtcgagtttacttggataaaacgagttgaggtaaactctcgagttgtaaaac 27257574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 145 - 312
Target Start/End: Complemental strand, 49236481 - 49236324
Alignment:
Q  145 attaagtcatattttacattattgacatatttacaatattatattagcttataattgtcatgtatatgataatttttctacaatattaattttaggtaaa 244  Q
    |||||| |||||||| || ||||||| ||||||||||||||||||||          |||||| ||| |||| |||| || ||| ||||||||| |||||    
T  49236481 attaagccatattttgcactattgacctatttacaatattatattag----------tcatgtgtataataaattttatataattttaattttatgtaaa 49236392  T
Q  245 ctcgtatgaatttacgagtcgagattacctagataaaattagttgaggcaaactcgtgagtggtaaaa 312  Q
    |||||| || ||| ||||||||| ||||||||  ||||  |||||||| |||||| ||||| ||||||    
T  49236391 ctcgtacgagttttcgagtcgagtttacctaggcaaaacgagttgaggtaaactcttgagttgtaaaa 49236324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 126 - 197
Target Start/End: Original strand, 8122546 - 8122617
Alignment:
Q  126 ggtatactttgcctttataattaagtcatattttacattattgacatatttacaatattatattagcttata 197  Q
    |||||| ||||||||| ||| |||||||||||||||| ||||||| | ||||||||||||||||| ||||||    
T  8122546 ggtataatttgcctttgtaagtaagtcatattttacactattgacctgtttacaatattatattaccttata 8122617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 130 - 272
Target Start/End: Complemental strand, 18247083 - 18246940
Alignment:
Q  130 tactttgcctttataattaagtc-atattttacattattgacatatttacaatattatattagcttataattgtcatgtatatgataatttttctacaat 228  Q
    |||||||| |||||||||||||| ||||||| || ||||||  | |||||| |||||||||||||||||  ||||||| |||| |||| || | || |||    
T  18247083 tactttgcatttataattaagtctatatttttcactattgatctttttacagtattatattagcttatatatgtcatgcatataataaattgtataaaat 18246984  T
Q  229 attaattttaggtaaactcgtatgaatttacgagtcgagattac 272  Q
     | ||||||||||||| ||||  || ||||||| ||||| ||||    
T  18246983 ttcaattttaggtaaattcgtgcgagtttacgattcgagtttac 18246940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 130 - 272
Target Start/End: Original strand, 51107762 - 51107905
Alignment:
Q  130 tactttgcctttataattaagtc-atattttacattattgacatatttacaatattatattagcttataattgtcatgtatatgataatttttctacaat 228  Q
    |||||||| |||||||||||||| ||||||| || ||||||  | |||||| |||||||||||||||||  ||||||| |||| |||| || | || |||    
T  51107762 tactttgcatttataattaagtctatatttttcactattgatctttttacagtattatattagcttatatatgtcatgcatataataaattgtataaaat 51107861  T
Q  229 attaattttaggtaaactcgtatgaatttacgagtcgagattac 272  Q
     | ||||||||||||| ||||  || ||||||| ||||| ||||    
T  51107862 ttcaattttaggtaaattcgtgcgagtttacgattcgagtttac 51107905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 140 - 221
Target Start/End: Original strand, 226499 - 226580
Alignment:
Q  140 ttataattaagtcatattttacattattgacatatttacaatattatattagcttataattgtcatgtatatgataattttt 221  Q
    ||||||| |||||||||||| || ||||||| ||||| ||||||||||||||||||||  ||||| |||||| |||| ||||    
T  226499 ttataatcaagtcatattttgcactattgacctatttgcaatattatattagcttatatatgtcacgtatataataaatttt 226580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 71 - 263
Target Start/End: Complemental strand, 40431964 - 40431771
Alignment:
Q  71 agttaactctgtattttgatgttaagttatgcacaatgctttattttggtcattgggtatactttgcctttataattaagtcatattttacattattgac 170  Q
    |||||| | ||||||||||||||||||||  || || |||||||| || |  |||  |||| ||||||| ||||||| ||| ||||||| || |||||||    
T  40431964 agttaattttgtattttgatgttaagttaaacataacgctttattatgattgttgaatatattttgcctctataattgagtaatattttgcactattgac 40431865  T
Q  171 atatttacaatatt-atattagcttataattgtcatgtatatgataatttttctacaatattaattttaggtaaactcgtatgaatttacgagt 263  Q
     |||||| |||||| | ||||  |||||  || || |||||| |||| |||  || ||| |||||||||| ||||||||||  |||||||||||    
T  40431864 ctatttataatatttagattattttatatatgccacgtatataataaatttgatataattttaattttagataaactcgtacaaatttacgagt 40431771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 126 - 299
Target Start/End: Complemental strand, 2292776 - 2292598
Alignment:
Q  126 ggtatactttgcctttataattaagtcatattttacattattgacatatttacaatattatattagcttata-attgtcatgtatat-gata---atttt 220  Q
    |||||| ||||| ||| ||||||||||||||||| || ||||||| |||||| |||||| |||||||||||| ||    || |||||  |||   || |     
T  2292776 ggtatagtttgcatttgtaattaagtcatattttgcaatattgacctatttaaaatattttattagcttatatatatatatatatatatatatatatata 2292677  T
Q  221 tctacaatattaattttaggtaaactcgtatgaatttacgagtcgagattacctagataaaattagttgaggcaaactc 299  Q
    | || ||| ||||||||||||||||||||| || ||  ||||||||| ||||||||| ||||| |||||||| ||||||    
T  2292676 tatataattttaattttaggtaaactcgtacgagttcccgagtcgagtttacctagacaaaatgagttgaggtaaactc 2292598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 130 - 249
Target Start/End: Original strand, 9174450 - 9174570
Alignment:
Q  130 tactttgcctttataattaagtc-atattttacattattgacatatttacaatattatattagcttataattgtcatgtatatgataatttttctacaat 228  Q
    |||||||| |||||||||||||| ||||||| || ||||||  | |||||| ||||||||||||||| |  ||||||| |||| |||| || | || |||    
T  9174450 tactttgcatttataattaagtctatatttttcactattgatctttttacagtattatattagcttacatatgtcatgcatataataaattgtataaaat 9174549  T
Q  229 attaattttaggtaaactcgt 249  Q
     | ||||||||||||||||||    
T  9174550 ttcaattttaggtaaactcgt 9174570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 147 - 263
Target Start/End: Complemental strand, 50038135 - 50038019
Alignment:
Q  147 taagtcatattttacattattgacatatttacaatattatattagcttataattgtcatgtatatgataatttttctacaatattaattttaggtaaact 246  Q
    ||||||||||||| || |||| |||| |||  |||||||||  |||||| |  |||||||||||| |||| |||| || ||| |||||||||||||||||    
T  50038135 taagtcatattttgcactattaacatgtttgtaatattataccagcttacatatgtcatgtatataataaattttatataattttaattttaggtaaact 50038036  T
Q  247 cgtatgaatttacgagt 263  Q
     ||| || |||||||||    
T  50038035 tgtaagagtttacgagt 50038019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 207 - 318
Target Start/End: Original strand, 34019650 - 34019761
Alignment:
Q  207 tatatgataatttttctacaatattaattttaggtaaactcgtatgaatttacgagtcgagattacctagataaaattagttgaggcaaactcgtgagtg 306  Q
    ||||| |||| |||| || ||| ||||||||||||||||||||| || ||||||| || || |||| ||| |||||| |||||||| ||||||  ||||     
T  34019650 tatataataaattttatataattttaattttaggtaaactcgtacgagtttacgattcaagtttacatagctaaaataagttgaggtaaactctcgagtt 34019749  T
Q  307 gtaaaactttgc 318  Q
    ||||||| ||||    
T  34019750 gtaaaaccttgc 34019761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 126 - 299
Target Start/End: Complemental strand, 11578645 - 11578472
Alignment:
Q  126 ggtatactttgcctttataattaagtc-atattttacattattgacatatttacaatattatattagcttataattgtcatgtatatgataatttttcta 224  Q
    |||||||||||| ||||||| |||||| ||||||| || ||||||  | ||| ||  |||||||||||||  |  ||| ||| |||| |||| || | ||    
T  11578645 ggtatactttgcatttataagtaagtctatatttttcactattgatctttttccagcattatattagcttccatatgt-atgcatataataaattgtata 11578547  T
Q  225 caatattaattttaggtaaactcgtatgaatttacgagtcgagattacctagataaaattagttgaggcaaactc 299  Q
     ||| | ||||||||||||||||||| || ||||||| ||||| |||||||| |||||  |||||||| ||||||    
T  11578546 aaatttcaattttaggtaaactcgtacgagtttacgattcgagtttacctaggtaaaacgagttgaggtaaactc 11578472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 126 - 188
Target Start/End: Original strand, 15927653 - 15927715
Alignment:
Q  126 ggtatactttgcctttataattaagtcatattttacattattgacatatttacaatattatat 188  Q
    |||||| |||| |||| ||||||||||||||||| || ||||||| |||||||||||||||||    
T  15927653 ggtataatttgtctttgtaattaagtcatattttgcactattgacctatttacaatattatat 15927715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 126 - 267
Target Start/End: Original strand, 43854997 - 43855138
Alignment:
Q  126 ggtatactttgcctttataattaagtcatattttacattattgacatatttacaatatt-atattagcttataattgtcatgtatatgataatttttcta 224  Q
    |||||||||||  ||||||||||| |||||||||| |  || || |||||||||| ||| |||||| || | |  |||||||||||  |||| |||| ||    
T  43854997 ggtatactttgtatttataattaattcatattttataccatcgatatatttacaagatttatattaact-acatatgtcatgtatactataaattttata 43855095  T
Q  225 caatattaattttaggtaaactcgtatgaatttacgagtcgag 267  Q
     ||| ||||||||||||||||||||| || |||| ||||||||    
T  43855096 taattttaattttaggtaaactcgtacgagtttatgagtcgag 43855138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 126 - 299
Target Start/End: Complemental strand, 1242826 - 1242655
Alignment:
Q  126 ggtatactttgcctttataattaagtc-atattttacattattgacatatttacaatattatattagcttataattgtcatgtatatgataatttttcta 224  Q
    |||||||||||| ||||||| |||||| ||||||| || ||||||  | ||||||  |||||||||||||| |  |   ||| |||| |||| || | ||    
T  1242826 ggtatactttgcatttataagtaagtctatatttttcactattgatctttttacagaattatattagcttacatat---atgcatataataaattgtata 1242730  T
Q  225 caatattaattttaggtaaactcgtatgaatttacgagtcgagattacctagataaaattagttgaggcaaactc 299  Q
     ||| ||||| ||||||||||||||| || ||||||| ||||| ||| |||| |||||  |||||||| ||||||    
T  1242729 aaattttaatcttaggtaaactcgtacgagtttacgattcgagtttatctaggtaaaacgagttgaggtaaactc 1242655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 137 - 274
Target Start/End: Complemental strand, 49971183 - 49971046
Alignment:
Q  137 cctttataattaagtcatattttacattatt-gacatatttacaatattatattagcttataattgtcatgtatatgataatttttctacaatattaatt 235  Q
    ||||||||||| |||||||||||  | |||| ||| ||||||||||| |||||||| ||| |  ||||||||| || ||||  ||| |  ||| ||||||    
T  49971183 cctttataatttagtcatattttgtactattcgac-tatttacaatactatattagtttacatatgtcatgtaaataataaactttatttaattttaatt 49971085  T
Q  236 ttaggtaaactcgtatgaatttacgagtcgagattacct 274  Q
    ||||||||||||||| || ||  ||||||||| ||||||    
T  49971084 ttaggtaaactcgtacgagttctcgagtcgagtttacct 49971046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 174 - 299
Target Start/End: Original strand, 15928237 - 15928362
Alignment:
Q  174 tttacaatattatattagcttataattgtcatgtatatgataatttttctacaatattaattttaggtaaactcgtatgaatttacgagtcgagattacc 273  Q
    |||| |||||||||||||||| ||  |||| || ||||  ||| |||| || |||  |||||||||||||||||||| || ||  ||||||||| |||||    
T  15928237 tttagaatattatattagcttgtatatgtcttgcatatattaaattttatataattctaattttaggtaaactcgtacgagttctcgagtcgagtttacc 15928336  T
Q  274 tagataaaattagttgaggcaaactc 299  Q
    |||  ||||  |||||||| ||||||    
T  15928337 taggcaaaacgagttgaggtaaactc 15928362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 127 - 216
Target Start/End: Original strand, 46042468 - 46042557
Alignment:
Q  127 gtatactttgcctttataattaagtcatattttacattattgacatatttacaatattatattagcttataattgtcatgtatatgataa 216  Q
    |||||||||| ||||||||||||||  ||| || ||  |||||| ||||  |||||||||||||||||| |  |||||||||||| ||||    
T  46042468 gtatactttgtctttataattaagttttatgttgcaccattgacctattagcaatattatattagcttacacatgtcatgtatataataa 46042557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 137 - 191
Target Start/End: Original strand, 35193691 - 35193745
Alignment:
Q  137 cctttataattaagtcatattttacattattgacatatttacaatattatattag 191  Q
    ||||||||||| ||||||||||| || |||| |  ||||||||||||||||||||    
T  35193691 cctttataatttagtcatattttgcactattaaactatttacaatattatattag 35193745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 255 - 319
Target Start/End: Original strand, 3593976 - 3594040
Alignment:
Q  255 tttacgagtcgagattacctagataaaattagttgaggcaaactcgtgagtggtaaaactttgct 319  Q
    ||||||||||||| |||||||| |||||  |||||||| ||||||  |||| ||||||| |||||    
T  3593976 tttacgagtcgagtttacctaggtaaaacgagttgaggtaaactctcgagttgtaaaaccttgct 3594040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 213 - 313
Target Start/End: Complemental strand, 34751095 - 34750995
Alignment:
Q  213 ataatttttctacaatattaattttaggtaaactcgtatgaatttacgagtcgagattacctagataaaattagttgaggcaaactcgtgagtggtaaaa 312  Q
    |||| |||| || ||| ||||||||||||||| ||||| || ||||||| ||||| |||| | | |||||  |||||||| ||||||  |||| ||||||    
T  34751095 ataaattttatataattttaattttaggtaaattcgtacgagtttacgattcgagtttacattgctaaaacgagttgaggtaaactctcgagttgtaaaa 34750996  T
Q  313 c 313  Q
    |    
T  34750995 c 34750995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 77; Significance: 1e-35; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 80 - 272
Target Start/End: Complemental strand, 7437107 - 7436915
Alignment:
Q  80 tgtattttgatgttaagttatgcacaatgctttattttggtcattgggtatactttgcctttataattaagtcatattttacattattgacatatttaca 179  Q
    |||||||||||| ||||||| ||| || | |||||| ||||  || | |||| |||| |||| ||||||||||||||||| || ||||||| ||||||||    
T  7437107 tgtattttgatgctaagttaagcataacgttttattatggtagtttgatataatttgtctttgtaattaagtcatattttgcactattgacttatttaca 7437008  T
Q  180 atattatattagcttataattgtcatgtatatgataatttttctacaatattaattttaggtaaactcgtatgaatttacgagtcgagattac 272  Q
    ||||||||||||||||||  ||||||| |||| |||| |||| || ||| ||||||||||||||||||||| || ||  ||||||||| ||||    
T  7437007 atattatattagcttatatatgtcatgcatataataaattttatataattttaattttaggtaaactcgtacgagttctcgagtcgagtttac 7436915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 143 - 249
Target Start/End: Complemental strand, 4962196 - 4962090
Alignment:
Q  143 taattaagtcatattttacattattgacatatttacaatattatattagcttataattgtcatgtatatgataatttttctacaatattaattttaggta 242  Q
    ||||||||||||||||| |||||||||| ||||||||||||||||||||||||||  ||||||| |||| |||| |||| || ||| |||||||||||||    
T  4962196 taattaagtcatattttgcattattgacctatttacaatattatattagcttatatatgtcatgcatataataaattttatataattttaattttaggta 4962097  T
Q  243 aactcgt 249  Q
    |||||||    
T  4962096 aactcgt 4962090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 126 - 250
Target Start/End: Original strand, 33693866 - 33693990
Alignment:
Q  126 ggtatactttgcctttataattaagtcatattttacattattgacatatttacaatattatattagcttataattgtcatgtatatgataatttttctac 225  Q
    |||||| ||||||||| ||||||||||||||||| || ||||| | ||||||||||||||||||||||||||  ||||||| |||| |||| |||| ||     
T  33693866 ggtataatttgcctttgtaattaagtcatattttgcactattgccctatttacaatattatattagcttatatatgtcatgcatataataaattttatat 33693965  T
Q  226 aatattaattttaggtaaactcgta 250  Q
    ||| |||||||| ||||||||||||    
T  33693966 aattttaatttttggtaaactcgta 33693990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 81 - 299
Target Start/End: Original strand, 43173446 - 43173664
Alignment:
Q  81 gtattttgatgttaagttatgcacaatgctttattttggtcattgggtatactttgcctttataattaagtcatattttacattattgacatatttacaa 180  Q
    ||||||||||||||||||  ||| || | |||||  ||||  || | |||| ||||| ||| || | |||||||||||| || ||||||| |||||||||    
T  43173446 gtattttgatgttaagttgagcataacgttttatcatggtagtttgttatattttgcttttgtattcaagtcatattttgcactattgacctatttacaa 43173545  T
Q  181 tattatattagcttataattgtcatgtatatgataatttttctacaatattaattttaggtaaactcgtatgaatttacgagtcgagattacctagataa 280  Q
    |||||||||||||||||  ||||||| |||| |||| |||| |  ||| ||||||||| |||||||| || || ||  ||||||||| ||||||| ||||    
T  43173546 tattatattagcttatacatgtcatgcatataataaattttatgtaattttaattttatgtaaactcatacgagttctcgagtcgagtttacctaaataa 43173645  T
Q  281 aattagttgaggcaaactc 299  Q
    ||  |||||||| ||||||    
T  43173646 aacgagttgaggtaaactc 43173664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 80 - 256
Target Start/End: Original strand, 49458917 - 49459095
Alignment:
Q  80 tgtattttgatgttaagttatgcacaatgctttattttggtcattgggtatactttgcctttataattaagtcatattttacattattgacatatttaca 179  Q
    |||||||||||| ||||||  ||| |||| |||| | ||||  || | |||| ||| ||||| ||||||||||||||||| || ||||||| ||||||||    
T  49458917 tgtattttgatgctaagttgagcataatgttttactatggtagtttgatataatttccctttgtaattaagtcatattttgcactattgacctatttaca 49459016  T
Q  180 atattatattagcttata-at-tgtcatgtatatgataatttttctacaatattaattttaggtaaactcgtatgaatt 256  Q
    |||||||||||||||||| || || | || |||| |||| |||| || ||| ||||||||||||||||||||| |||||    
T  49459017 atattatattagcttatatatatggcttgcatataataaattttatataattttaattttaggtaaactcgtacgaatt 49459095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 126 - 299
Target Start/End: Original strand, 53836514 - 53836687
Alignment:
Q  126 ggtatactttgcctttataattaagtc-atattttacattattgacatatttacaatattatattagcttataattgtcatgtatatgataatttttcta 224  Q
    |||||||||||| ||||||| |||||| ||||||| || |||||| || |||||| ||||||||||||||| |  ||| ||| |||| |||| || | ||    
T  53836514 ggtatactttgcatttataagtaagtctatatttttcactattgatatttttacagtattatattagcttagatatgt-atgcatataataaattgtata 53836612  T
Q  225 caatattaattttaggtaaactcgtatgaatttacgagtcgagattacctagataaaattagttgaggcaaactc 299  Q
     ||| ||||||||||||||||||||| || ||| ||||||||| ||| ||||||||||  ||| |||| ||||||    
T  53836613 aaattttaattttaggtaaactcgtacgagttttcgagtcgagtttatctagataaaacgagtcgaggtaaactc 53836687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 137 - 249
Target Start/End: Original strand, 25050173 - 25050285
Alignment:
Q  137 cctttataattaagtcatattttacattattgacatatttacaatattatattagcttataattgtcatgtatatgataatttttctacaatattaattt 236  Q
    ||||||||||| |||||||||||||| |||||   |||||||||||||||||||| ||| |  ||||||||| || |||| |||| |  |||||||||||    
T  25050173 cctttataatttagtcatattttacagtattggactatttacaatattatattagtttacatatgtcatgtaaataataaattttatttaatattaattt 25050272  T
Q  237 taggtaaactcgt 249  Q
    |||||||||||||    
T  25050273 taggtaaactcgt 25050285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 127 - 238
Target Start/End: Complemental strand, 9030608 - 9030497
Alignment:
Q  127 gtatactttgcctttataattaagtcatattttacattattgacatatttacaatattatattagcttataattgtcatgtatatgataatttttctaca 226  Q
    |||||||||| |||| |||||||||||||||||  ||||||||||||||| ||||||||||||||||||    ||||||| |||| |||| |||| || |    
T  9030608 gtatactttgtctttgtaattaagtcatattttgaattattgacatatttgcaatattatattagcttacttatgtcatggatataataaattttatata 9030509  T
Q  227 atattaatttta 238  Q
    || |||||||||    
T  9030508 attttaatttta 9030497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 128 - 266
Target Start/End: Original strand, 1666480 - 1666618
Alignment:
Q  128 tatactttgcctttataattaagtcatattttacattattgacatatttacaatattatattagcttataattgtcatgtatatgataatttttctacaa 227  Q
    |||| ||| ||||| ||| || ||||||||||||||||||||| |||||||||||||||||||| |||||  | ||||| |||| |||| ||||  | ||    
T  1666480 tataatttacctttgtaagtatgtcatattttacattattgacctatttacaatattatattaggttatatatttcatgcatataataaattttacataa 1666579  T
Q  228 tattaattttaggtaaactcgtatgaatttacgagtcga 266  Q
    | || ||||||| |||||||||| || ||| ||||||||    
T  1666580 ttttcattttagataaactcgtacgagttttcgagtcga 1666618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 126 - 313
Target Start/End: Complemental strand, 22488612 - 22488419
Alignment:
Q  126 ggtatactttgcctttataattaagtc-atattttacattattgacatatttacaatattatattagcttataattgtcatgtatatgataatttttcta 224  Q
    |||||||||||| |||||||||||||| ||||||| || | ||||  | |||||||||||||||||||||| |  ||||||| |||| |||| || | ||    
T  22488612 ggtatactttgcatttataattaagtctatatttttcacttttgatctttttacaatattatattagcttacatatgtcatgcatataataaattgtata 22488513  T
Q  225 caatattaattttaggtaaactcgtatgaattta-----cgagtcgagattacctagataaaattagttgaggcaaactcgtgagtggtaaaac 313  Q
     ||| | ||||||||||||||||||| || ||||     ||||||||| ||| |||| |||||  |||||||| ||||||  |||| |||||||    
T  22488512 aaatttcaattttaggtaaactcgtacgagtttacaattcgagtcgagtttaactaggtaaaacgagttgaggtaaactctcgagttgtaaaac 22488419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 126 - 272
Target Start/End: Original strand, 49296670 - 49296816
Alignment:
Q  126 ggtatactttgcctttataattaagtc-atattttacattattgacatatttacaatattatattagcttataattgtcatgtatatgataatttttcta 224  Q
    |||||||||||| ||||||| |||||| ||||||| |||||||||  | |||||| ||||||||||||||| |  ||| ||| |||| |||| || | ||    
T  49296670 ggtatactttgcatttataagtaagtctatatttttcattattgatctttttacagtattatattagcttacatatgt-atgcatataataaattgtata 49296768  T
Q  225 caatattaattttaggtaaactcgtatgaatttacgagtcgagattac 272  Q
     ||| ||||||||||||||||||||| || ||||||| ||||| ||||    
T  49296769 aaattttaattttaggtaaactcgtacgagtttacgattcgagtttac 49296816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 130 - 272
Target Start/End: Original strand, 8599515 - 8599658
Alignment:
Q  130 tactttgcctttataattaagtc-atattttacattattgacatatttacaatattatattagcttataattgtcatgtatatgataatttttctacaat 228  Q
    |||||||| |||||||||||||| ||||||| |||||||||  | |||||| ||||||||||||||| |  | ||||| |||| |||| || | || |||    
T  8599515 tactttgcatttataattaagtctatatttttcattattgatctttttacagtattatattagcttacatatatcatgcatataataaattgtataaaat 8599614  T
Q  229 attaattttaggtaaactcgtatgaatttacgagtcgagattac 272  Q
     | ||||||||||||||||||  || ||||||| ||||| ||||    
T  8599615 ttcaattttaggtaaactcgtgcgagtttacgattcgagtttac 8599658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 109 - 184
Target Start/End: Original strand, 27162896 - 27162971
Alignment:
Q  109 ctttattttggtcattgggtatactttgcctttataattaagtcatattttacattattgacatatttacaatatt 184  Q
    ||||||| ||||  |||||||||||||| |||||||||||||| ||||||| || ||||||| |||||||||||||    
T  27162896 ctttattatggtggttgggtatactttgtctttataattaagttatattttgcactattgacctatttacaatatt 27162971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 80 - 241
Target Start/End: Complemental strand, 21386037 - 21385878
Alignment:
Q  80 tgtattttgatgttaagttatgcacaatgctttattttggtcattgggtatactttgcctttataattaagtcatattttacattattgacatatttaca 179  Q
    |||||||||||| ||||||  ||| || | |||||| ||||  || |||||| ||| ||||| ||||||||||||||||| || |||| || ||||| ||    
T  21386037 tgtattttgatgctaagttgagcataacgttttattatggtagtttggtataattttcctttgtaattaagtcatatttttcactattaacctatttgca 21385938  T
Q  180 atattatattagcttataattgtcatgtatatgataatttttctacaatattaattttaggt 241  Q
    ||||||||||||| ||||  |||||||  ||| |||| |||  || ||| ||||||||||||    
T  21385937 atattatattagcatata--tgtcatgcgtataataaatttcatataattttaattttaggt 21385878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 153 - 267
Target Start/End: Complemental strand, 30238075 - 30237961
Alignment:
Q  153 atattttacattattgacatatttacaatattatattagcttataattgtcatgtatatgataatttttctacaatattaattttaggtaaactcgtatg 252  Q
    ||||||| || ||||||| ||||| |||||||||||||||| | |  |||| ||||||| |||| |||| || | | |||||||||||||||||||||      
T  30238075 atattttgcactattgacctatttgcaatattatattagctaacatatgtcttgtatataataaattttatatacttttaattttaggtaaactcgtaca 30237976  T
Q  253 aatttacgagtcgag 267  Q
    ||||||| |||||||    
T  30237975 aatttacaagtcgag 30237961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 164 - 299
Target Start/End: Original strand, 24063932 - 24064066
Alignment:
Q  164 tattgacatatttacaatattatattagcttataattgtcatgtatatgataatttttctacaatattaattttaggtaaactcgtatgaatttacgagt 263  Q
    |||||| || ||||||||||||||||||||||||  |||| || |||| |||| |||| || ||| |||| ||||||||||||| || || ||  |||||    
T  24063932 tattgatatgtttacaatattatattagcttatatatgtcgtgcatataataaattttatataattttaa-tttaggtaaactcatacgagttctcgagt 24064030  T
Q  264 cgagattacctagataaaattagttgaggcaaactc 299  Q
    |||| ||||||||  ||||  |||||||| ||||||    
T  24064031 cgagtttacctaggcaaaacgagttgaggtaaactc 24064066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 200 - 299
Target Start/End: Original strand, 27163020 - 27163119
Alignment:
Q  200 tgtcatgtatatgataatttttctacaatattaattttaggtaaactcgtatgaatttacgagtcgagattacctagataaaattagttgaggcaaactc 299  Q
    |||||||||||| |||| |||| || ||| ||||||||||||||||| ||| || ||||||||||||  |||| || ||| ||  |||||||||||||||    
T  27163020 tgtcatgtatataataaattttatataattttaattttaggtaaacttgtacgagtttacgagtcgaatttacataaatataacaagttgaggcaaactc 27163119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 149 - 250
Target Start/End: Original strand, 25932026 - 25932126
Alignment:
Q  149 agtcatattttacattattgacatatttacaatattatattagcttata-at-tgtcatgtatatgataatttttctacaatattaattttaggtaaact 246  Q
    |||||||| || || |||||||||||||||||||||||||||||||||| || | |||||||||| |||| |||| || |||||   ||||| |||||||    
T  25932026 agtcatatattgcactattgacatatttacaatattatattagcttatatatatatcatgtatataataaattttatataatat---ttttaagtaaact 25932122  T
Q  247 cgta 250  Q
    ||||    
T  25932123 cgta 25932126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 230 - 313
Target Start/End: Complemental strand, 53644838 - 53644755
Alignment:
Q  230 ttaattttaggtaaactcgtatgaatttacgagtcgagattacctagataaaattagttgaggcaaactcgtgagtggtaaaac 313  Q
    ||||||||||||||||||||| || ||||||| ||||  |||| ||| |||||  |||||||| ||||||  |||| |||||||    
T  53644838 ttaattttaggtaaactcgtacgagtttacgattcgaatttacatagctaaaacgagttgaggtaaactctcgagttgtaaaac 53644755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 76; Significance: 5e-35; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 127 - 306
Target Start/End: Complemental strand, 1254032 - 1253853
Alignment:
Q  127 gtatactttgcctttataattaagtcatattttacattattgacatatttacaatattatattagcttataattgtcatgtatatgataatttttctaca 226  Q
    |||||||||| |||||||||||||||||||||| || ||||||| |||| ||||||||||||||||||| |  | | |||||||| |||| |||| || |    
T  1254032 gtatactttgtctttataattaagtcatattttgcactattgacctattgacaatattatattagcttacatatcttatgtatataataaattttatata 1253933  T
Q  227 atattaattttaggtaaactcgtatgaatttacgagtcgagattacctagataaaattagttgaggcaaactcgtgagtg 306  Q
    || ||||||||||||||||||||| || ||||||| ||||| ||||  || |||||  |||||||| |||||| ||||||    
T  1253932 attttaattttaggtaaactcgtacgagtttacgattcgagtttacaaaggtaaaacgagttgaggtaaactcttgagtg 1253853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 80 - 194
Target Start/End: Complemental strand, 42813822 - 42813708
Alignment:
Q  80 tgtattttgatgttaagttatgcacaatgctttattttggtcattgggtatactttgcctttataattaagtcatattttacattattgacatatttaca 179  Q
    |||||||||||||||||||  ||| ||   ||||||||||| |||| |||||||||  |||||||||||||||||||||||||||||| || ||||||||    
T  42813822 tgtattttgatgttaagttgagcaaaacattttattttggttattgagtatactttatctttataattaagtcatattttacattattaacctatttaca 42813723  T
Q  180 atattatattagctt 194  Q
    |||||||||||||||    
T  42813722 atattatattagctt 42813708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 137 - 313
Target Start/End: Original strand, 42611126 - 42611302
Alignment:
Q  137 cctttataattaagtcatattttacattattgacatatttacaatattatattagcttataattgtcatgtatatgataatttttctacaatattaattt 236  Q
    ||||| ||||||||| ||||||| || ||||||| |||||||||||| |||||||||||||  ||||||| |||| ||||  ||| || ||| |||||||    
T  42611126 cctttgtaattaagtaatattttgcactattgacctatttacaatatcatattagcttatatatgtcatgcatataataaactttatataattttaattt 42611225  T
Q  237 taggtaaactcgtatgaatttacgagtcgagattacctagataaaattagttgaggcaaactcgtgagtggtaaaac 313  Q
    |||||||||||||| || ||  ||||||||| ||||||||  ||||  |||||||| ||||||  |||| |||||||    
T  42611226 taggtaaactcgtacgagttctcgagtcgagtttacctaggcaaaacgagttgaggtaaactctcgagttgtaaaac 42611302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 126 - 272
Target Start/End: Complemental strand, 5771685 - 5771541
Alignment:
Q  126 ggtatactttgcctttataattaagtcatattttacattattgacatatttacaatattatattagcttataattgtcatgtatatgataatttttctac 225  Q
    |||||| ||||||||| ||||||||||||||||| || ||||||| ||||||| ||| ||||||||||||||  ||||||| |||| |||| |||| ||     
T  5771685 ggtataatttgcctttgtaattaagtcatatttttcactattgacctatttaccata-tatattagcttatatatgtcatgcatataataa-ttttatat 5771588  T
Q  226 aatattaattttaggtaaactcgtatgaatttacgagtcgagattac 272  Q
    ||| | ||||||||||||||||||| |||||| ||||||||| ||||    
T  5771587 aatttcaattttaggtaaactcgtacgaattttcgagtcgagtttac 5771541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 80 - 319
Target Start/End: Original strand, 23017535 - 23017774
Alignment:
Q  80 tgtattttgatgttaagttatgcacaatgctttattttggtcattgggtatactttgcctttataattaagtcatattttacattattgacatatttaca 179  Q
    |||||||||||| ||||||  ||| || | |||||| ||||  || |||||| | ||| ||| |||||||||||||||||||| ||| ||| ||||||||    
T  23017535 tgtattttgatgctaagttgagcataacgttttattatggtagtttggtataatctgcttttgtaattaagtcatattttacactatcgacctatttaca 23017634  T
Q  180 atattatattagcttataattgtcatgtatatgataatttttctacaatattaattttaggtaaactcgtatgaatttacgagtcgagattacctagata 279  Q
    ||||||||||| ||||||  ||| ||| |||| |||| |||| || ||| |||||||||||||||||  || || ||  | ||||||| ||| ||||  |    
T  23017635 atattatattaacttatatctgtaatgcatataataaattttatataattttaattttaggtaaacttatacgagttctcaagtcgagtttatctagtca 23017734  T
Q  280 aaattagttgaggcaaactcgtgagtggtaaaactttgct 319  Q
    |||  |||||||| ||||||  |||| ||||||| |||||    
T  23017735 aaacgagttgaggtaaactctcgagttgtaaaaccttgct 23017774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 80 - 316
Target Start/End: Original strand, 21486688 - 21486924
Alignment:
Q  80 tgtattttgatgttaagttatgcacaatgctttattttggtcattgggtatactttgcctttataattaagtcatattttacattattgacatatttaca 179  Q
    |||||||||||| ||||||  | | || | |||||| ||||  || ||||||  ||| |||| ||||||||||||||||| || ||| ||| ||||||||    
T  21486688 tgtattttgatgctaagttgagtataacgttttattatggtagtttggtataacttgtctttgtaattaagtcatattttgcactatcgacgtatttaca 21486787  T
Q  180 atattatattagcttataattgtcatgtatatgataatttttctacaatattaattttaggtaaactcgtatgaatttacgagtcgagattacctagata 279  Q
    ||||||||||||||||||  ||||||| |||| |||| || |  | ||| |||||||||| ||||||| || || ||  ||||||||| |||| || | |    
T  21486788 atattatattagcttatatatgtcatgcatataataaattctacataattttaattttagctaaactcatacgagttctcgagtcgagtttacttaaaga 21486887  T
Q  280 aaattagttgaggcaaactcgtgagtggtaaaacttt 316  Q
    |||| |||||||| ||||||  ||||  |||||||||    
T  21486888 aaatgagttgaggtaaactctcgagttctaaaacttt 21486924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 126 - 250
Target Start/End: Original strand, 43172673 - 43172797
Alignment:
Q  126 ggtatactttgcctttataattaagtcatattttacattattgacatatttacaatattatattagcttataattgtcatgtatatgataatttttctac 225  Q
    |||||| ||| ||||| |||||||||||||||||  |||||||||  |||||||||||||| ||||||||||  ||||||| |||| ||||||||| ||     
T  43172673 ggtataattttcctttgtaattaagtcatattttgaattattgaccaatttacaatattattttagcttatatatgtcatgcatataataatttttatat 43172772  T
Q  226 aatattaattttaggtaaactcgta 250  Q
    ||| || ||||||| ||| ||||||    
T  43172773 aatttttattttagataatctcgta 43172797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 126 - 244
Target Start/End: Original strand, 16710119 - 16710237
Alignment:
Q  126 ggtatactttgcctttataattaagtcatattttacattattgacatatttacaatattatattagcttataattgtcatgtatatgataatttttctac 225  Q
    |||||| |||||||||  |||||||||||| ||| || ||||||| ||||||||||||| ||||||||||||  |||| || |||| |||| |||| ||     
T  16710119 ggtataatttgcctttgcaattaagtcataatttgcactattgacttatttacaatattttattagcttatatatgtcttgcatataataaattttatat 16710218  T
Q  226 aatattaattttaggtaaa 244  Q
    ||| |||||||||||||||    
T  16710219 aattttaattttaggtaaa 16710237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 126 - 244
Target Start/End: Original strand, 17684355 - 17684473
Alignment:
Q  126 ggtatactttgcctttataattaagtcatattttacattattgacatatttacaatattatattagcttataattgtcatgtatatgataatttttctac 225  Q
    |||||| |||||||||  |||||||||||| ||| || ||||||| ||||||||||||| ||||||||||||  |||| || |||| |||| |||| ||     
T  17684355 ggtataatttgcctttgcaattaagtcataatttgcactattgacttatttacaatattttattagcttatatatgtcttgcatataataaattttatat 17684454  T
Q  226 aatattaattttaggtaaa 244  Q
    ||| |||||||||||||||    
T  17684455 aattttaattttaggtaaa 17684473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 127 - 264
Target Start/End: Original strand, 6269025 - 6269163
Alignment:
Q  127 gtatactttgcctttataattaagtcatattttacattattgacatatttacaatattatattagcttataat-tgtcatgtatatgataatttttctac 225  Q
    |||||| ||| |||||||||||||||||||||| || ||||||| ||||| ||||||||||| || ||   || | | |||||||| |||| |||| ||     
T  6269025 gtatacattgtctttataattaagtcatattttgcactattgacctatttgcaatattatataagttttgcatatataatgtatataataaattttatat 6269124  T
Q  226 aatattaattttaggtaaactcgtatgaatttacgagtc 264  Q
    ||| ||||||||||||||||||||| || ||||| ||||    
T  6269125 aattttaattttaggtaaactcgtacgagtttacaagtc 6269163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 137 - 266
Target Start/End: Complemental strand, 33496910 - 33496781
Alignment:
Q  137 cctttataattaagtcatattttacattattgacatatttacaatattatattagcttataattgtcatgtatatgataatttttctacaatattaattt 236  Q
    ||||||||||| ||||||||||| || ||||    |||||||||||||||||||| ||| |  ||||||||| || |||| |||| |  ||| |||||||    
T  33496910 cctttataatttagtcatattttgcactattatactatttacaatattatattagtttacatatgtcatgtaaataataaattttatttaattttaattt 33496811  T
Q  237 taggtaaactcgtatgaatttacgagtcga 266  Q
    ||| |||||||||| || |||| |||||||    
T  33496810 tagataaactcgtacgagtttatgagtcga 33496781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 137 - 313
Target Start/End: Original strand, 27149293 - 27149469
Alignment:
Q  137 cctttataattaagtcatattttacattattgacatatttacaatattatattagcttataattgtcatgtatatgataatttttctacaatattaattt 236  Q
    ||||||||||| ||||||||||| || |||||   |||||||||||||||||||| ||| |  ||||||||| || |||| |||  |  ||| | |||||    
T  27149293 cctttataatttagtcatattttgcactattggactatttacaatattatattagtttacatatgtcatgtaaataataaatttaatttaatttaaattt 27149392  T
Q  237 taggtaaactcgtatgaatttacgagtcgagattacctagataaaattagttgaggcaaactcgtgagtggtaaaac 313  Q
    |||||||||||||| || ||  ||||||||| |||| |||  ||||  |||| ||| |||||| | ||| |||||||    
T  27149393 taggtaaactcgtacgagttctcgagtcgagcttacttaggcaaaacgagttaaggtaaactcttaagttgtaaaac 27149469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 123 - 299
Target Start/End: Original strand, 31175099 - 31175283
Alignment:
Q  123 ttgggtatactttgcctttataat---taagtcatattttacattattgac----atatttacaata-ttatattagcttataattgtcatgtatatgat 214  Q
    ||||||| ||||||||||||| ||   ||||||||||||||||  |||||     |||||||||||| ||||||||||||| |  ||| |||||||| ||    
T  31175099 ttgggtacactttgcctttattataactaagtcatattttacacaattgaactatatatttacaatacttatattagcttacatatgtgatgtatataat 31175198  T
Q  215 aatttttctacaatattaattttaggtaaactcgtatgaatttacgagtcgagattacctagataaaattagttgaggcaaactc 299  Q
    || |||| || ||| || ||||||  | ||||| || |||||||||| ||||  ||||||| ||||||  |||||||| ||||||    
T  31175199 aaattttatataattttcattttatattaactcctacgaatttacgaatcgattttacctaaataaaacgagttgaggtaaactc 31175283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 126 - 261
Target Start/End: Complemental strand, 37915602 - 37915467
Alignment:
Q  126 ggtatactttgcctttataattaagtc-atattttacattattgacatatttacaatattatattagcttataattgtcatgtatatgataatttttcta 224  Q
    |||||||||||| |||||||||||||| |||||||  | ||||||  | |||||| ||||||||||||||| |  ||||||| |||| |||| || | ||    
T  37915602 ggtatactttgcatttataattaagtctatatttttaactattgatct-tttacagtattatattagcttacatatgtcatgcatataataaattgtata 37915504  T
Q  225 caatattaattttaggtaaactcgtatgaatttacga 261  Q
     ||| | ||||||||||||| ||||| || |||||||    
T  37915503 aaatttcaattttaggtaaattcgtacgagtttacga 37915467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 207 - 272
Target Start/End: Original strand, 21024612 - 21024677
Alignment:
Q  207 tatatgataatttttctacaatattaattttaggtaaactcgtatgaatttacgagtcgagattac 272  Q
    ||||| |||| |||| || ||| ||||||||||||||||||||| || ||||||||||||| ||||    
T  21024612 tatataataaattttatataattttaattttaggtaaactcgtacgagtttacgagtcgagtttac 21024677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 207 - 282
Target Start/End: Complemental strand, 14731821 - 14731746
Alignment:
Q  207 tatatgataatttttctacaatattaattttaggtaaactcgtatgaatttacgagtcgagattacctagataaaa 282  Q
    ||||| |||| |||| || ||| ||||||||||||||||||||| || ||||||| ||||| |||| ||| |||||    
T  14731821 tatataataaattttatataattttaattttaggtaaactcgtacgagtttacgattcgagtttacatagctaaaa 14731746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 255 - 317
Target Start/End: Original strand, 14742201 - 14742263
Alignment:
Q  255 tttacgagtcgagattacctagataaaattagttgaggcaaactcgtgagtggtaaaactttg 317  Q
    ||||||||||||| |||||||| |||||  |||||||| |||||| ||||| | |||||||||    
T  14742201 tttacgagtcgagtttacctaggtaaaacgagttgaggtaaactcttgagttgcaaaactttg 14742263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 137 - 267
Target Start/End: Complemental strand, 26201344 - 26201214
Alignment:
Q  137 cctttataattaagtcatattttacattattgacatatttacaatattatattagcttataattgtcatgtatatgataatttttctacaatattaattt 236  Q
    ||||||||||| ||||||||| |||| |||||    ||||||||||||||||||| ||| |  ||||||||| || |||| |||| |  ||| |||||||    
T  26201344 cctttataatttagtcatattatacactattggaccatttacaatattatattagattacatatgtcatgtaaataataaattttatttaattttaattt 26201245  T
Q  237 taggtaaactcgtatgaatttacgagtcgag 267  Q
    ||  |||||| ||| || ||  |||||||||    
T  26201244 tacctaaacttgtacgagttctcgagtcgag 26201214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 267
Target Start/End: Original strand, 38910998 - 38911079
Alignment:
Q  185 atattagcttataattgtcatgtatatgataatttttctacaatattaattttaggtaaactcgtatgaatttacgagtcgag 267  Q
    ||||||||||| |  ||| || ||||| |||| |||| || ||| ||||||||||||||||||||| || |||||||||||||    
T  38910998 atattagcttacatatgttatatatataataaattttatataat-ttaattttaggtaaactcgtacgagtttacgagtcgag 38911079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 272
Target Start/End: Original strand, 35314075 - 35314140
Alignment:
Q  207 tatatgataatttttctacaatattaattttaggtaaactcgtatgaatttacgagtcgagattac 272  Q
    ||||| |||| |||| || ||| |||||||||||||||||| || || ||||||||||||| ||||    
T  35314075 tatataataaattttatataattttaattttaggtaaactcatacgagtttacgagtcgagtttac 35314140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 72; Significance: 1e-32; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 80 - 299
Target Start/End: Original strand, 18984882 - 18985101
Alignment:
Q  80 tgtattttgatgttaagttatgcacaatgctttattttggtcattgggtatactttgcctttataattaagtcatattttacattattgacatatttaca 179  Q
    |||||||||||| ||||||  ||| |||| |||||| ||||  || |||||| ||| ||||| ||||| |||||| ||||||| ||||||| ||||||||    
T  18984882 tgtattttgatgctaagttgagcaaaatgttttattatggtagtttggtataattttcctttgtaatttagtcatgttttacactattgacctatttaca 18984981  T
Q  180 atattatattagcttataattgtcatgtatatgataatttttctacaatattaattttaggtaaactcgtatgaatttacgagtcgagattacctagata 279  Q
    ||||||||||||||||||  |||| || | || |||| |||| || ||| ||||||||||||||||||||  || ||  |||||| || ||||||||| |    
T  18984982 atattatattagcttatatatgtcttgcacataataaattttatataattttaattttaggtaaactcgtgcgagttctcgagtcaagtttacctagaca 18985081  T
Q  280 aaattagttgaggcaaactc 299  Q
    |||  |||||||| ||||||    
T  18985082 aaacaagttgaggtaaactc 18985101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 126 - 299
Target Start/End: Original strand, 24082787 - 24082958
Alignment:
Q  126 ggtatactttgcctttataattaagtcatattttacattattgacatatttacaatattatattagcttataattgtcatgtatatgataatttttctac 225  Q
    |||||| ||| ||||| ||||||||||||||||| |||||||| | ||||||||||||||||||| ||||||  ||||||| |||| |||| |||| ||     
T  24082787 ggtataattttcctttgtaattaagtcatattttgcattattggcctatttacaatattatattaacttata--tgtcatgcatataataaattttatat 24082884  T
Q  226 aatattaattttaggtaaactcgtatgaatttacgagtcgagattacctagataaaattagttgaggcaaactc 299  Q
    ||||||||||||||||||||||||| || ||  | ||||||| ||||||||  ||||  |||||||| ||||||    
T  24082885 aatattaattttaggtaaactcgtacgagttctctagtcgagtttacctaggcaaaacgagttgaggtaaactc 24082958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 80 - 275
Target Start/End: Original strand, 42423757 - 42423952
Alignment:
Q  80 tgtattttgatgttaagttatgcacaatgctttattttggtcattgggtatactttgcctttataattaagtcatattttacattattgacatatttaca 179  Q
    |||||||||||||||||||   || |||| |||||| ||||  || |||||| ||| || || ||||||||| ||||||| |||||||||| ||||||||    
T  42423757 tgtattttgatgttaagttgaacataatgttttattatggtagtttggtataattttcccttgtaattaagttatattttgcattattgacctatttaca 42423856  T
Q  180 atattatattagcttataattgtcatgtatatgataatttttctacaatattaattttaggtaaactcgtatgaatttacgagtcgagattaccta 275  Q
    ||| |||||||||||| |  |||| || |||| |||| |||  || ||| ||||||||||||||||||||| || ||  ||||||||| |||||||    
T  42423857 ataatatattagcttacatgtgtcttgcatataataaatttaatataattttaattttaggtaaactcgtacgagttctcgagtcgagtttaccta 42423952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 126 - 275
Target Start/End: Complemental strand, 12737587 - 12737437
Alignment:
Q  126 ggtatactttgcctttataattaagtcatattttacattattgacatatttacaatattatattagcttataattgtcatgtatatgat-aatttttcta 224  Q
    |||||| | ||||||| ||||||||||||||||| || |||||| |||||||||||||||||||||||||||  ||||||| |||| || ||||||| ||    
T  12737587 ggtataatatgcctttgtaattaagtcatattttgcactattgatatatttacaatattatattagcttatatatgtcatgcatataataaatttttata 12737488  T
Q  225 caatattaattttaggtaaactcgtatgaatttacgagtcgagattaccta 275  Q
     ||| || ||||||||| |||||||| || ||  ||||||||| |||||||    
T  12737487 taattttcattttaggttaactcgtacgacttctcgagtcgagtttaccta 12737437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 143 - 276
Target Start/End: Complemental strand, 8029340 - 8029207
Alignment:
Q  143 taattaagtcatattttacattattgacatatttacaatattatattagcttataattgtcatgtatatgataatttttctacaatattaattttaggta 242  Q
    ||||||||||||||||| || ||||||| ||||||||||||||||||||||||||  |||| || ||||  ||| |||| || ||| |||||||||||||    
T  8029340 taattaagtcatattttgcactattgacctatttacaatattatattagcttatatatgtcttgcatatagtaaattttatataattttaattttaggta 8029241  T
Q  243 aactcgtatgaatttacgagtcgagattacctag 276  Q
    |||||||| || ||  ||||||||| ||||||||    
T  8029240 aactcgtacgagttctcgagtcgagtttacctag 8029207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 128 - 256
Target Start/End: Complemental strand, 6387402 - 6387274
Alignment:
Q  128 tatactttgcctttataattaagtcatattttacattattgacatatttacaatattatattagcttataattgtcatgtatatgataatttttctacaa 227  Q
    |||| ||| ||||| ||||||||||||||||| || |||| || ||||||||||||||||||| ||||||  ||||||| |||| |||| |||| || ||    
T  6387402 tataattttcctttgtaattaagtcatattttgcactattaacctatttacaatattatattaacttatatatgtcatgcatataataaattttatataa 6387303  T
Q  228 tattaattttaggtaaactcgtatgaatt 256  Q
    | ||||||||||||||||||||| |||||    
T  6387302 ttttaattttaggtaaactcgtacgaatt 6387274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 80 - 246
Target Start/End: Complemental strand, 27974515 - 27974349
Alignment:
Q  80 tgtattttgatgttaagttatgcacaatgctttattttggtcattgggtatactttgcctttataattaagtcatattttacattattgacatatttaca 179  Q
    |||||||||||| ||||||  ||| || | |||||| ||||  || ||| || |||||  || |||||||||||||||||||| |||| || ||||||||    
T  27974515 tgtattttgatgctaagttgagcataacgttttattatggtagtttggtgtaatttgctgttgtaattaagtcatattttacactattaacctatttaca 27974416  T
Q  180 atattatattagcttataattgtcatgtatatgataatttttctacaatattaattttaggtaaact 246  Q
    ||||||| ||||||||||  ||||||| |||| ||  ||||| || ||| |||||||||||||||||    
T  27974415 atattatgttagcttatatatgtcatgcatataattttttttatataattttaattttaggtaaact 27974349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 80 - 246
Target Start/End: Complemental strand, 28031784 - 28031618
Alignment:
Q  80 tgtattttgatgttaagttatgcacaatgctttattttggtcattgggtatactttgcctttataattaagtcatattttacattattgacatatttaca 179  Q
    |||||||||||| ||||||  ||| || | |||||| ||||  || ||| || |||||  || |||||||||||||||||||| |||| || ||||||||    
T  28031784 tgtattttgatgctaagttgagcataacgttttattatggtagtttggtgtaatttgctgttgtaattaagtcatattttacactattaacctatttaca 28031685  T
Q  180 atattatattagcttataattgtcatgtatatgataatttttctacaatattaattttaggtaaact 246  Q
    ||||||| ||||||||||  ||||||| |||| ||  ||||| || ||| |||||||||||||||||    
T  28031684 atattatgttagcttatatatgtcatgcatataattttttttatataattttaattttaggtaaact 28031618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 127 - 292
Target Start/End: Complemental strand, 4870668 - 4870503
Alignment:
Q  127 gtatactttgcctttataattaagtcatattttacattattgacatatttacaatattatattagcttataattgtcatgtatatgataatttttctaca 226  Q
    |||||||||| ||||||||||| |||||||||| ||  || ||| | ||| ||||||||| || ||||| |  ||||| |||||| |||| |||| || |    
T  4870668 gtatactttgtctttataattatgtcatattttgcacaatcgacctttttgcaatattatgttggcttacatatgtcacgtatataataaattttatata 4870569  T
Q  227 atattaattttaggtaaactcgtatgaatttacgagtcgagattacctagataaaattagttgagg 292  Q
    |||||||||||||||||||||||| || ||||||| || || |||| ||  |||||| ||||||||    
T  4870568 atattaattttaggtaaactcgtacgagtttacgattcaagtttacataagtaaaatgagttgagg 4870503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 126 - 243
Target Start/End: Complemental strand, 27876596 - 27876479
Alignment:
Q  126 ggtatactttgcctttataattaagtcatattttacattattgacatatttacaatattatattagcttataattgtcatgtatatgataatttttctac 225  Q
    |||||| ||||| ||| |||||||||||||||||||| ||||||| || ||| |||||||||||||||||||  ||||||| |||| |||| |||| ||     
T  27876596 ggtataatttgcttttgtaattaagtcatattttacactattgacctacttataatattatattagcttatatatgtcatgcatataataaattttatat 27876497  T
Q  226 aatattaattttaggtaa 243  Q
    ||| || |||||||||||    
T  27876496 aatttttattttaggtaa 27876479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 126 - 243
Target Start/End: Complemental strand, 28016777 - 28016660
Alignment:
Q  126 ggtatactttgcctttataattaagtcatattttacattattgacatatttacaatattatattagcttataattgtcatgtatatgataatttttctac 225  Q
    |||||| ||||| ||| |||||||||||||||||||| ||||||| || ||| |||||||||||||||||||  ||||||| |||| |||| |||| ||     
T  28016777 ggtataatttgcttttgtaattaagtcatattttacactattgacctacttataatattatattagcttatatatgtcatgcatataataaattttatat 28016678  T
Q  226 aatattaattttaggtaa 243  Q
    ||| || |||||||||||    
T  28016677 aatttttattttaggtaa 28016660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 80 - 313
Target Start/End: Original strand, 41394415 - 41394648
Alignment:
Q  80 tgtattttgatgttaagttatgcacaatgctttattttggtcattgggtatactttgcctttataattaagtcatattttacattattgacatatttaca 179  Q
    |||| ||||||| |||||||  |||||   |||||| ||||  || |||||| |||||| |  |||||| |||||||||| || ||||||| ||||||||    
T  41394415 tgtaatttgatgctaagttaaacacaacattttattatggtagtttggtataatttgccgtagtaattaggtcatattttgcactattgacctatttaca 41394514  T
Q  180 atattatattagcttataattgtcatgtatatgataatttttctacaatattaattttaggtaaactcgtatgaatttacgagtcgagattacctagata 279  Q
    |||||||||||| |||||  ||||||| |||| |||| |||| || ||| | ||||||  ||||||||||| || ||  ||||||||| |||||||   |    
T  41394515 atattatattaggttatacatgtcatgcatataataaattttatataatttaaattttttgtaaactcgtacgagttctcgagtcgagtttacctaagca 41394614  T
Q  280 aaattagttgaggcaaactcgtgagtggtaaaac 313  Q
    |||  |||||||| ||||||  |||| |||||||    
T  41394615 aaacgagttgaggtaaactctcgagttgtaaaac 41394648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 127 - 259
Target Start/End: Complemental strand, 33177391 - 33177259
Alignment:
Q  127 gtatactttgcctttataattaagtcatattttacattattgacatatttacaatattatattagcttataattgtcatgtatatgataatttttctaca 226  Q
    ||||| |||| ||||||||||||||| ||||||  || |||||| ||||| |||| ||||||||| ||| |  |||||||||||| |||| |||| || |    
T  33177391 gtatattttgtctttataattaagtcttattttgtatcattgacctatttgcaattttatattagtttacatatgtcatgtatataataaattttatata 33177292  T
Q  227 atattaattttaggtaaactcgtatgaatttac 259  Q
    || ||||||||||||||||| ||| || |||||    
T  33177291 attttaattttaggtaaactggtacgagtttac 33177259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 80 - 299
Target Start/End: Complemental strand, 12521954 - 12521737
Alignment:
Q  80 tgtattttgatgttaagttatgcacaatgctttattttggtcattgggtatactttgcctttataattaagtcatattttacattattgacatatttaca 179  Q
    |||||||||||| ||||||  ||| |||  |||||| ||||  || |||||| || ||||||  |||||||||||||||||| |||||||  ||||||||    
T  12521954 tgtattttgatgctaagttgagcataatattttattatggtagtttggtataatt-gcctttgaaattaagtcatattttaccttattgatctatttaca 12521856  T
Q  180 atattatattagcttataattgtcatgtatatgataatttttctacaatattaattttaggtaaactcgtatgaatttacgagtcgagattacctagata 279  Q
    |||| |||||||||||||  || |||| |||  ||||  ||| || ||| ||||||||||||||||||| | || ||  ||| ||||| |||||| |  |    
T  12521855 atatcatattagcttatatatgccatgaataaaataa-atttatataattttaattttaggtaaactcgcacgagttctcgaatcgagtttaccttggca 12521757  T
Q  280 aaattagttgaggcaaactc 299  Q
    |||| |||||||| ||||||    
T  12521756 aaatgagttgaggtaaactc 12521737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 84 - 190
Target Start/End: Complemental strand, 27869482 - 27869376
Alignment:
Q  84 ttttgatgttaagttatgcacaatgctttattttggtcattgggtatactttgcctttataattaagtcatattttacattattgacatatttacaatat 183  Q
    |||||||| ||||||  ||| || | |||||| |||| ||| |||||| |||| | || |||||||||||||||||||||||||||  ||||||||||||    
T  27869482 ttttgatgctaagttgagcataacgttttattgtggtaatttggtataatttgtcgttgtaattaagtcatattttacattattgatctatttacaatat 27869383  T
Q  184 tatatta 190  Q
    |||||||    
T  27869382 tatatta 27869376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 80 - 313
Target Start/End: Complemental strand, 3007369 - 3007135
Alignment:
Q  80 tgtattttgatgttaagttatgcacaatgctttattttggtcattgggtatactttgcctttataattaagtcatattttacattattgacatatttaca 179  Q
    |||||||||||| ||||||  ||| || | |||||| || |  || |||||| |||| |||| |||||||||||| |||| || ||||||| |||||||     
T  3007369 tgtattttgatgctaagttgagcataacgttttattatgatagtttggtataatttgtctttgtaattaagtcatgttttgcactattgacttatttacg 3007270  T
Q  180 atattatattagcttataattgtcatgtatatgataatttttcta-caatattaattttaggtaaactcgtatgaatttacgagtcgagattacctagat 278  Q
    || |||||||||||||||  | || || |||| |||| |||| ||   || ||||||||||||||||||||| |||||  ||| ||||| ||  ||||      
T  3007269 atgttatattagcttatatatttcttgcatataataaattttatattgattttaattttaggtaaactcgtacgaattctcgaatcgagttttgctaggc 3007170  T
Q  279 aaaattagttgaggcaaactcgtgagtggtaaaac 313  Q
    ||||  |||||||| ||||||  |||| |||||||    
T  3007169 aaaacgagttgaggtaaactctcgagttgtaaaac 3007135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 137 - 246
Target Start/End: Original strand, 24067408 - 24067517
Alignment:
Q  137 cctttataattaagtcatattttacattattgacatatttacaatattatattagcttataattgtcatgtatatgataatttttctacaatattaattt 236  Q
    ||||||||||  ||||||||||| || ||||||  ||||||||||||||||||||  ||||  | ||||||| || |||| |||| |  ||| |||||||    
T  24067408 cctttataatgtagtcatattttgcactattgaactatttacaatattatattagtctatatatatcatgtaaataataaattttatttaattttaattt 24067507  T
Q  237 taggtaaact 246  Q
    ||| ||||||    
T  24067508 tagataaact 24067517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 184 - 272
Target Start/End: Complemental strand, 26620072 - 26619984
Alignment:
Q  184 tatattagcttataattgtcatgtatatgataatttttctacaatattaattttaggtaaactcgtatgaatttacgagtcgagattac 272  Q
    ||||||||||||||  ||||||  |||| |||| |||| || ||| ||||||||||||||||||||| || ||  ||||||||| ||||    
T  26620072 tatattagcttatatatgtcatccatataataaattttatataattttaattttaggtaaactcgtacgagttctcgagtcgagtttac 26619984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 126 - 292
Target Start/End: Original strand, 136120 - 136286
Alignment:
Q  126 ggtatactttgcctttataattaagtcatattttacattattgacatatttacaatattatattagcttataattgtcatgtatatgataatttttctac 225  Q
    |||||| ||||  ||| |||||||||| ||||||  | ||||||| |||||| | |||||||||||||||||  |||||||||||| |||| |||| ||     
T  136120 ggtatagtttgaatttgtaattaagtcgtattttgtactattgacctatttatagtattatattagcttatatatgtcatgtatataataaattttatat 136219  T
Q  226 aatattaattttaggtaaactcgtatgaatttacgagtcgagattacctagataaaattagttgagg 292  Q
    ||| ||||||||||||||||||||  || ||  ||||||||| ||| ||||  ||||| ||||||||    
T  136220 aattttaattttaggtaaactcgtgcgagttctcgagtcgagtttatctaggcaaaatgagttgagg 136286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0573 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0573
Description:

Target: scaffold0573; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 144 - 250
Target Start/End: Original strand, 9477 - 9582
Alignment:
Q  144 aattaagtcatattttacattattgacatatttacaatattatattagcttataattgtcatgtatatgataatttttctacaatattaattttaggtaa 243  Q
    |||||||||||||||| || ||||||| ||||||||||||||||||||||||||  |||| || |||| | || |||| || ||| |||| |||||||||    
T  9477 aattaagtcatatttttcactattgacctatttacaatattatattagcttatatatgtcttgcatataagaaattttatataattttaa-tttaggtaa 9575  T
Q  244 actcgta 250  Q
    |||||||    
T  9576 actcgta 9582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 130 - 272
Target Start/End: Complemental strand, 16338 - 16195
Alignment:
Q  130 tactttgcctttataattaagtc-atattttacattattgacatatttacaatattatattagcttataattgtcatgtatatgataatttttctacaat 228  Q
    |||||||  |||||||||||||| ||||||| || ||||||    |||||| ||||||||||||||| |  ||||||| |||| |||| || | || |||    
T  16338 tactttgtatttataattaagtctatatttttcactattgatccttttacagtattatattagcttacatatgtcatgcatataataaattgtataaaat 16239  T
Q  229 attaattttaggtaaactcgtatgaatttacgagtcgagattac 272  Q
     | ||||||||||||||||||| || ||||||| ||||| ||||    
T  16238 ttcaattttaggtaaactcgtacgagtttacgattcgagtttac 16195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 80 - 221
Target Start/End: Original strand, 89836 - 89977
Alignment:
Q  80 tgtattttgatgttaagttatgcacaatgctttattttggtcattgggtatactttgcctttataattaagtcatattttacattattgacatatttaca 179  Q
    |||||||||||| ||||||  ||| |||  |||||| ||||  ||  ||||| |||| |||| || |||||||||||||| || || |||| ||||||||    
T  89836 tgtattttgatgctaagttgcgcataatattttattatggtagtttcgtataatttgtctttgtacttaagtcatattttgcactactgacctatttaca 89935  T
Q  180 atattatattagcttataattgtcatgtatatgataattttt 221  Q
     ||||||||||||||| |  ||||||| |||| |||| ||||    
T  89936 gtattatattagcttacatatgtcatgcatataataaatttt 89977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 130 - 193
Target Start/End: Original strand, 38393 - 38456
Alignment:
Q  130 tactttgcctttataattaagtcatattttacattattgacatatttacaatattatattagct 193  Q
    ||||||| ||||||||||| |||||||||| || ||||||| ||||| ||||||||| ||||||    
T  38393 tactttgtctttataattatgtcatattttgcactattgacttattttcaatattatgttagct 38456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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