View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14484_high_34 (Length: 377)
Name: NF14484_high_34
Description: NF14484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14484_high_34 |
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Alignment Details
Target: chr5 (Bit Score: 333; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 1 - 371
Target Start/End: Complemental strand, 13880098 - 13879729
Alignment:
| Q |
1 |
tgaggagtgattaactctaaaaaa-gaaaagaactaaatgaattaaaaatgatgaatgaactaagttatatggtgagagtgattcaatgaaaaagtgaca |
99 |
Q |
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| T |
13880098 |
tgaggagtgattaactctaaaaaaagaaaagaactaaatgaattaaaaatgatgaatgaactaagttatatggtgagagtaattcaatgaaaaagtgaca |
13879999 |
T |
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| Q |
100 |
cgtcactaagcaaagtctcttgatagccaagttagtatccttctagaacattcttaagccatttttcactacaaaaaccctaaaagcaagcgataaagag |
199 |
Q |
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| T |
13879998 |
cgtcactaagcaaagtctcttgatagccaagttagtatccttctagaacattctaaagccatttttcactacaaaaaccctaaaagcaagcgataaagag |
13879899 |
T |
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| Q |
200 |
agaaagcaatcccaagaaaatctcactctgtcaactgtcaacacaatggcattttcccgcctcctttcttcctcttaccactctttcatgtccgccgtgc |
299 |
Q |
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| T |
13879898 |
agaaagcaatcccaagaaaatctca--ctgtcaactgttaacacaatggcattttcccgcctcctttcttcctcttaccactctttcatgtccgccgtgc |
13879801 |
T |
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| Q |
300 |
ctgcattcattcgccaccgccccttcgctactgccgccatgtctctggttgccatctcctatgctactccac |
371 |
Q |
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| T |
13879800 |
ctgcattcattcgccaccgccccttcgctactgccgccatgtctctggttgccatctcctacgccactccac |
13879729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 88 - 360
Target Start/End: Complemental strand, 13875805 - 13875517
Alignment:
| Q |
88 |
gaaaaagtgacacgtcactaagcaaagtctcttgatagccaagttagtatccttctagaacattcttaagccatttt----------tcactacaaaaac |
177 |
Q |
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| T |
13875805 |
gaaaacgtgacacgtcacaaaacaaagtggcttggtaaccaagttagtatccttctagaacattcttaagccatttcactaactcactcactacaaaaac |
13875706 |
T |
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| Q |
178 |
cctaaaagcaagcgataaagagagaaagcaatcccaagaaaatctc--actctgtcaactg--------tcaacacaatggcattttcccgcctcctttc |
267 |
Q |
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| T |
13875705 |
cctaaaattaag----aaagaaagaaagcaatcccaaaaaaatctctaaatctgtgaagtcaagtttcttcaacacaatggcattttcccgcctcctctc |
13875610 |
T |
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| Q |
268 |
ttcctcttaccactctttcatgtccgccgtgcctgcattcattcgccaccgccccttcgctactgccgccatgtctctggttgccatctccta |
360 |
Q |
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| T |
13875609 |
ttcctgctaccgctcattcatggccgccgtgccttcactcattcgccgccaccccgtcgctactgccgccatgtcactcgtagccatctccta |
13875517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 96 - 154
Target Start/End: Complemental strand, 13885918 - 13885860
Alignment:
| Q |
96 |
gacacgtcactaagcaaagtctcttgatagccaagttagtatccttctagaacattctt |
154 |
Q |
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| T |
13885918 |
gacacgtcactaagcaaagtggcttggtagccaaggtagtatccttctagaaccttctt |
13885860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 154
Target Start/End: Complemental strand, 13870812 - 13870759
Alignment:
| Q |
101 |
gtcactaagcaaagtctcttgatagccaagttagtatccttctagaacattctt |
154 |
Q |
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| T |
13870812 |
gtcagtaagcaaagtggcttggtagccaagttagtatcattctagaaccttctt |
13870759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 237 - 273
Target Start/End: Complemental strand, 13885756 - 13885720
Alignment:
| Q |
237 |
tcaacacaatggcattttcccgcctcctttcttcctc |
273 |
Q |
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| T |
13885756 |
tcaacacaatggcattttcccgcttcctctcttcctc |
13885720 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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