View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14484_high_35 (Length: 377)
Name: NF14484_high_35
Description: NF14484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14484_high_35 |
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Alignment Details
Target: chr4 (Bit Score: 160; Significance: 3e-85; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 17 - 202
Target Start/End: Complemental strand, 2622068 - 2621890
Alignment:
| Q |
17 |
atgaagaaaccataacattactccaagtagtggtaaaaaatgttggaaaaattctttgaatttcttttatcctgctggacaaaaagaatatcaacaaaag |
116 |
Q |
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| T |
2622068 |
atgaagaaaccataacattactccaagtagtggtaaaaaatgttggaaaaattctttgaatttcttttatcctgctggacaaaaagaatatcaacaaaag |
2621969 |
T |
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| Q |
117 |
ctcttttaggactcaaaactttcacttataagctttcaaatgaaacatgatacatgaaaagtaaactcggctacctagctttattc |
202 |
Q |
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| T |
2621968 |
ctcttttaggactcaaaactttcacttataagctttcaa-------atgatacatgaaaagtaaactcggctacctagctttattc |
2621890 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 238 - 371
Target Start/End: Complemental strand, 2621854 - 2621721
Alignment:
| Q |
238 |
gctcaaagttggataactcaatacataagtttgctttgcagtaacaaccaaatcgaaaatcaaattctgattcaacaataaatatattacatcactatga |
337 |
Q |
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| T |
2621854 |
gctcaaagttggataactcaatacataagtttgctttgcagtagcaaccaaatcgaaaatcaaattctgattcaataataaatatattacatcactatga |
2621755 |
T |
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| Q |
338 |
agtatcgtcatctaaatagatattcctttgcttc |
371 |
Q |
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| T |
2621754 |
agtatcgtcatctaaatagatattcctttgcttc |
2621721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 57 - 161
Target Start/End: Original strand, 2476696 - 2476801
Alignment:
| Q |
57 |
tgttggaaaaattctttgaatttcttttatcctgctggacaaaaagaatatcaacaaaagctcttttaggactc--aaaactttcacttataagctttca |
154 |
Q |
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| T |
2476696 |
tgttagaaaaattgtttgaatttcttttttgctgctgga-aaaaagaatgtcaacagaagttctttcaggagtcatacaactttgatttataagctttca |
2476794 |
T |
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| Q |
155 |
aatgaaa |
161 |
Q |
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| T |
2476795 |
aatgaaa |
2476801 |
T |
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