View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14484_high_40 (Length: 336)

Name: NF14484_high_40
Description: NF14484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14484_high_40
NF14484_high_40
[»] chr4 (3 HSPs)
chr4 (92-327)||(53371773-53372008)
chr4 (92-327)||(23010942-23011177)
chr4 (177-211)||(21604173-21604207)
[»] scaffold0316 (1 HSPs)
scaffold0316 (92-327)||(2892-3127)
[»] chr7 (2 HSPs)
chr7 (92-327)||(27117753-27117988)
chr7 (110-171)||(27118418-27118479)
[»] chr1 (4 HSPs)
chr1 (104-241)||(32239441-32239578)
chr1 (93-209)||(32240014-32240131)
chr1 (263-327)||(32239574-32239638)
chr1 (92-172)||(51165436-51165516)
[»] chr3 (2 HSPs)
chr3 (99-265)||(7266610-7266775)
chr3 (18-92)||(39073914-39073988)
[»] chr8 (1 HSPs)
chr8 (92-157)||(41763787-41763852)


Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 92 - 327
Target Start/End: Complemental strand, 53372008 - 53371773
Alignment:
Q  92 ggagtgcagatgtgctccatttatgcagctgtccatttacccggttctcttcactgatggatgacatgtggcaactaaaaatcagatggctaggattaaa 191  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  53372008 ggagtgcagatctgctccatttatgcagctgtccatttacccggttctcttcactgatggatgacacgtggcaactaaaaatcagatggctaggattaaa 53371909  T
Q  192 aacatcaattgatgaaagccatagagaatcacttccatccctgacctccaatcacagcaactactcctcttctccattctccatcgctaaccccaaccat 291  Q
     |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  53371908 cacatcaattgatgaaagccatagagaatcaattccatccctgacctccaatcacagcaactactcctcttctccattctccatcgctgaccccaaccat 53371809  T
Q  292 atccaactatttctcttctctacacctatgcttctc 327  Q
    ||||||||||||||||||||| ||||| || |||||    
T  53371808 atccaactatttctcttctctccacctgtgattctc 53371773  T

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Target: chr4; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 92 - 327
Target Start/End: Original strand, 23010942 - 23011177
Alignment:
Q  92 ggagtgcagatgtgctccatttatgcagctgtccatttacccggttctcttcactgatggatgacatgtggcaactaaaaatcagatggctaggattaaa 191  Q
    ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  23010942 ggagtgcagatctgctccatttatgcagctgtccatttacctggttctcttcactgatggatgacacgtggcaactaaaaatcagatggctaggattaaa 23011041  T
Q  192 aacatcaattgatgaaagccatagagaatcacttccatccctgacctccaatcacagcaactactcctcttctccattctccatcgctaaccccaaccat 291  Q
     ||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  23011042 cacatcaattgatgaaagtcatagagaatcaattccatccctgacctccaatcacagcaactactcctcttctccattctccatcgctgaccccaaccat 23011141  T
Q  292 atccaactatttctcttctctacacctatgcttctc 327  Q
    ||||||||||||||||||||| ||||| || |||||    
T  23011142 atccaactatttctcttctctccacctgtgattctc 23011177  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 177 - 211
Target Start/End: Original strand, 21604173 - 21604207
Alignment:
Q  177 atggctaggattaaaaacatcaattgatgaaagcc 211  Q
    |||||||||||||||||||| ||||||||||||||    
T  21604173 atggctaggattaaaaacatgaattgatgaaagcc 21604207  T

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Target: scaffold0316 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 92 - 327
Target Start/End: Complemental strand, 3127 - 2892
Alignment:
Q  92 ggagtgcagatgtgctccatttatgcagctgtccatttacccggttctcttcactgatggatgacatgtggcaactaaaaatcagatggctaggattaaa 191  Q
    ||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| ||||||||||    
T  3127 ggagtgcagatctgctccatttatgcagctgtccatttacccgattctcttcactgatggatgacacgtggcaactaaaaatcagatggttaggattaaa 3028  T
Q  192 aacatcaattgatgaaagccatagagaatcacttccatccctgacctccaatcacagcaactactcctcttctccattctccatcgctaaccccaaccat 291  Q
     |||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  3027 cacatcaattgatgaaagccatagataatcaattccatccctgacctccaatcacagcaactactcctcttctccattctccatcgctgaccccaaccat 2928  T
Q  292 atccaactatttctcttctctacacctatgcttctc 327  Q
    ||||||||||||||||||||| ||||| || |||||    
T  2927 atccaactatttctcttctctccacctgtgattctc 2892  T

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Target: chr7 (Bit Score: 152; Significance: 2e-80; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 92 - 327
Target Start/End: Original strand, 27117753 - 27117988
Alignment:
Q  92 ggagtgcagatgtgctccatttatgcagctgtccatttacccggttctcttcactgatggatgacatgtggcaactaaaaatcagatggctaggattaaa 191  Q
    ||||| ||||| ||||| |||||||||| | ||||||||||||||||||||||| |||||||||||  ||||||||||||||| ||| ||||||||||||    
T  27117753 ggagtccagatctgctcaatttatgcagttctccatttacccggttctcttcaccgatggatgacacatggcaactaaaaatccgatagctaggattaaa 27117852  T
Q  192 aacatcaattgatgaaagccatagagaatcacttccatccctgacctccaatcacagcaactactcctcttctccattctccatcgctaaccccaaccat 291  Q
     |||||||||||||||||||| |||||||||||||||||||||||| ||||||| |||||||||||||||||||  |||||||||||| |||||||||||    
T  27117853 cacatcaattgatgaaagccagagagaatcacttccatccctgacccccaatcatagcaactactcctcttctcttttctccatcgctgaccccaaccat 27117952  T
Q  292 atccaactatttctcttctctacacctatgcttctc 327  Q
    ||||||||||| ||||||||| ||||| || |||||    
T  27117953 atccaactattcctcttctctccacctgtgattctc 27117988  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 110 - 171
Target Start/End: Complemental strand, 27118479 - 27118418
Alignment:
Q  110 atttatgcagctgtccatttacccggttctcttcactgatggatgacatgtggcaactaaaa 171  Q
    |||||||||||||||  ||||||| ||||| || || ||||||||||||||||||| |||||    
T  27118479 atttatgcagctgtctgtttacccagttctttttacggatggatgacatgtggcaattaaaa 27118418  T

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Target: chr1 (Bit Score: 118; Significance: 4e-60; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 104 - 241
Target Start/End: Original strand, 32239441 - 32239578
Alignment:
Q  104 tgctccatttatgcagctgtccatttacccggttctcttcactgatggatgacatgtggcaactaaaaatcagatggctaggattaaaaacatcaattga 203  Q
    |||||||||||||||||||||||||||| | ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||    
T  32239441 tgctccatttatgcagctgtccatttactcagttctcttcactgatggatgacacgtggcaactaaaaatcagatggctaggattaaacacatcaattga 32239540  T
Q  204 tgaaagccatagagaatcacttccatccctgacctcca 241  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  32239541 tgaaagccatagagaatcacttccatctctgacctcca 32239578  T

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Target: chr1; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 93 - 209
Target Start/End: Complemental strand, 32240131 - 32240014
Alignment:
Q  93 gagtgcagatgtgctccatttatgcagctgtccatttacccggttctcttcactgatggatgacatgtggcaactaaaaatcagatggctaggatta-aa 191  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||    
T  32240131 gagtgcagatctgctccatttatgcagctgtccatttacccggttctcttcactgatggatgacacgtggcaactaaaaatcagatggctaggattaaaa 32240032  T
Q  192 aacatcaattgatgaaag 209  Q
    ||||||| || |||||||    
T  32240031 aacatcattttatgaaag 32240014  T

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Target: chr1; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 263 - 327
Target Start/End: Original strand, 32239574 - 32239638
Alignment:
Q  263 ctccattctccatcgctaaccccaaccatatccaactatttctcttctctacacctatgcttctc 327  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| || |||||    
T  32239574 ctccattcttcatcgctaaccccaaccatatccaactatttctcttctctacacctgtgattctc 32239638  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 92 - 172
Target Start/End: Complemental strand, 51165516 - 51165436
Alignment:
Q  92 ggagtgcagatgtgctccatttatgcagctgtccatttacccggttctcttcactgatggatgacatgtggcaactaaaaa 172  Q
    ||||||||||| |||||||||| |  | ||||||| |||||||||||| ||||| |||  |||||| ||||||| ||||||    
T  51165516 ggagtgcagatctgctccatttttatatctgtccagttacccggttcttttcacagatacatgacacgtggcaattaaaaa 51165436  T

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Target: chr3 (Bit Score: 87; Significance: 1e-41; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 99 - 265
Target Start/End: Original strand, 7266610 - 7266775
Alignment:
Q  99 agatgtgctccatttatgcagctgtccatttacccggttctcttcactgatggatgacatgtggcaactaaaaatcagatggctaggattaaaaacatca 198  Q
    |||| ||||||||||||||| || ||||||||||||||||||||||| |||| |||| |  |||||| ||||||    ||||||||||||||||||||||    
T  7266610 agatctgctccatttatgcatctatccatttacccggttctcttcaccgatgaatgatacatggcaattaaaaactccatggctaggattaaaaacatca 7266709  T
Q  199 attgatgaaagccatagagaatcacttccatccctgacctccaatcacagcaactactcctcttctc 265  Q
    ||| ||||||||||| ||||| ||||||||||||||||| |||||||||  ||||||||||||||||    
T  7266710 atttatgaaagccatggagaagcacttccatccctgacc-ccaatcacaataactactcctcttctc 7266775  T

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Target: chr3; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 18 - 92
Target Start/End: Original strand, 39073914 - 39073988
Alignment:
Q  18 agatatgtctttgatgtaaagtgtatatgttgagcagatatccaattgtctaaattttttgcgtatatattcgag 92  Q
    ||||||||||||||||||||||||| ||||||||||| ||||||||| ||||||||| |||||||||||||||||    
T  39073914 agatatgtctttgatgtaaagtgtagatgttgagcagctatccaattatctaaatttcttgcgtatatattcgag 39073988  T

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Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 92 - 157
Target Start/End: Original strand, 41763787 - 41763852
Alignment:
Q  92 ggagtgcagatgtgctccatttatgcagctgtccatttacccggttctcttcactgatggatgaca 157  Q
    ||||||||||| ||||||||||||||| ||||||||||| ||| |||||||||| |||||||||||    
T  41763787 ggagtgcagatctgctccatttatgcaactgtccatttatccgattctcttcaccgatggatgaca 41763852  T

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