View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14484_high_41 (Length: 336)
Name: NF14484_high_41
Description: NF14484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14484_high_41 |
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Alignment Details
Target: chr1 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 15 - 323
Target Start/End: Complemental strand, 38187500 - 38187192
Alignment:
| Q |
15 |
tatcatcgagaagtataactatgtagctctgaaggacccacttccaagagaacttctgctgggtcagagtgagaggcaaattctgtatgatcgcgctggt |
114 |
Q |
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| T |
38187500 |
tatcatagagaagtataactatgtagctctgaaggacccacttccaagagaacttctgctgggtcagagtgagaggcaaattctgtatgatcgcgctggt |
38187401 |
T |
|
| Q |
115 |
agaattattaagggagaggtaagacatgcattctatatatttattgcctcataatttgaagttgcatatcagtcttgcactaaatgccttctttgtgata |
214 |
Q |
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| T |
38187400 |
agaattattaagggagaggtaagacatgcattctatatatttattgcctcataatttcaagttgcatatcagtcttacactaaatgccttctttgtgata |
38187301 |
T |
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| Q |
215 |
tcactggttttatacatgatctgttaatttccctagggattcattattggnnnnnnnncaactcttaagcattatgcttttagcctttgctgttctatag |
314 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
38187300 |
tcactggttttagacatgatctgttaatttccctagggattcattattggtttttgttcaactcttaagcattatgcttttagcctttgctgttctatag |
38187201 |
T |
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| Q |
315 |
gatgataat |
323 |
Q |
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||||||||| |
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| T |
38187200 |
gatgataat |
38187192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 54 - 190
Target Start/End: Original strand, 38923442 - 38923578
Alignment:
| Q |
54 |
acttccaagagaacttctgctgggtcagagtgagaggcaaattctgtatgatcgcgctggtagaattattaagggagaggtaagacatgcattctatata |
153 |
Q |
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|||||||||||||||||| ||||||||||||||||||||| || ||||||||| |||||||||||| |||||||| |||||||| ||||||||||||| |
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| T |
38923442 |
acttccaagagaacttcttctgggtcagagtgagaggcaagttgagtatgatcgtgctggtagaattgttaagggacaggtaagaaatgcattctatatc |
38923541 |
T |
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| Q |
154 |
tttattgcctcataatttgaagttgcatatcagtctt |
190 |
Q |
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|||||| |||| ||||| || |||||||||| |||| |
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| T |
38923542 |
tttattatctcacaatttcaatttgcatatcaatctt |
38923578 |
T |
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