View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14484_high_44 (Length: 334)
Name: NF14484_high_44
Description: NF14484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14484_high_44 |
 | |
|
| [»] scaffold0035 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 308; Significance: 1e-173; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 1 - 324
Target Start/End: Original strand, 5823280 - 5823603
Alignment:
| Q |
1 |
accctgaacaagcaaatttcataacaaaagaatgttctggagaaaattgggaacgtataatcccaagaatttggcctaacacaaagtaccttgaggttat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5823280 |
accctgaacaagcaaatttcataacaaaagaatgttctggagaaaattgggaacgtataatcccaagaatttggcctaacacaaagtaccttgaggttat |
5823379 |
T |
|
| Q |
101 |
tgtcactggtgctatggctcagtacattccaacccttgattattacagtggtaacctaccaaagccatgtacaatatatgcttcatctgaatgctatttt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
5823380 |
tgtcactggtgctatggctcagtacattcctacccttgattattatagtggtaacctaccaaaaccatgtacaatatatgcttcatctgaatgctatttt |
5823479 |
T |
|
| Q |
201 |
ggacttaaccttaagcctatgacagaacctaatgaagtttcttacaccattatgccaaacatgggttactttgaatttttaccacttgacgagtcacctc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5823480 |
ggacttaaccttaagcctatgacagaacctaatgaagtttcttacaccattatgccaaacatgggttactttgaatttttaccacttgacgagtcacctc |
5823579 |
T |
|
| Q |
301 |
caaaactagtagacctttttgatg |
324 |
Q |
| |
|
||||||||||||||||| |||||| |
|
|
| T |
5823580 |
caaaactagtagaccttgttgatg |
5823603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 24 - 285
Target Start/End: Complemental strand, 5832763 - 5832502
Alignment:
| Q |
24 |
acaaaagaatgttctggagaaaattgggaacgtataatcccaagaatttggcctaacacaaagtaccttgaggttattgtcactggtgctatggctcagt |
123 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||| |
|
|
| T |
5832763 |
acaaaagaatgttcaggagacaattgggaacgtataatcccaagaatctggcctaacacaaagtatcttgaagttattgtcactggtgctatggctcagt |
5832664 |
T |
|
| Q |
124 |
acattccaacccttgattattacagtggtaacctaccaaagccatgtacaatatatgcttcatctgaatgctattttggacttaaccttaagcctatgac |
223 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||| |
|
|
| T |
5832663 |
acattcctacccttgattattacagtggtaaccttccaaaaccatgtacaatgtatgcttcatctgaatgttattttggtcttaaccttaagcctatgac |
5832564 |
T |
|
| Q |
224 |
agaacctaatgaagtttcttacaccattatgccaaacatgggttactttgaatttttaccac |
285 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5832563 |
agaaccaaatgaagtttcttacaccattatgccaaacatgggttactttgaatttttaccac |
5832502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0035 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: scaffold0035
Description:
Target: scaffold0035; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 42 - 277
Target Start/End: Original strand, 78088 - 78323
Alignment:
| Q |
42 |
gaaaattgggaacgtataatcccaagaatttggcctaacacaaagtaccttgaggttattgtcactggtgctatggctcagtacattccaacccttgatt |
141 |
Q |
| |
|
|||||||||||| | |||||| || |||||||||||||| || || | || || ||||| ||||||||||||||||| ||||||||||| ||| ||| |
|
|
| T |
78088 |
gaaaattgggaaggaataatcataaagatttggcctaacaccaaatatttagatgtcattgtaactggtgctatggctcaatacattccaacacttaatt |
78187 |
T |
|
| Q |
142 |
attacagtggtaacctaccaaagccatgtacaatatatgcttcatctgaatgctattttggacttaaccttaagcctatgacagaacctaatgaagtttc |
241 |
Q |
| |
|
| ||||||||| |||| ||||||| || |||||||| || |||||||| ||||||||||||||||| || ||| |||| ||| ||||| |
|
|
| T |
78188 |
actacagtggtgggttacctctttcatgtactatgtatgcttcctcagaatgctactttggacttaaccttaatccaatgtgcaaaccatctgaggtttc |
78287 |
T |
|
| Q |
242 |
ttacaccattatgccaaacatgggttactttgaatt |
277 |
Q |
| |
|
|||||||| ||||||||||||| ||||||||||| |
|
|
| T |
78288 |
atacaccatcatgccaaacatggcctactttgaatt |
78323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University