View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14484_high_45 (Length: 327)
Name: NF14484_high_45
Description: NF14484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14484_high_45 |
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Alignment Details
Target: chr4 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 17 - 314
Target Start/End: Original strand, 43411544 - 43411841
Alignment:
| Q |
17 |
cagatacggcattacaagttcacaaaataccaacaagaatgataaacacaatggaaggctcacttatgctctttaaaatcttccaaaaatgtcaaattta |
116 |
Q |
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| T |
43411544 |
cagatacggcattacaagttcacaaaataccaacaagaatgataaacacaatggaaggctcacttatgctctttaaaatcttccaaaaatgtcaaattta |
43411643 |
T |
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| Q |
117 |
tgacaatcataagcaaaaagggaacttagtcatattattaattaaacaaagtaaaataccagtaaacattaaacatgaatcttgtagatgtagttcaagc |
216 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43411644 |
tgacaatcataagcaaaaatggaacttagtcatattattaattaaacaaagtaaaataccagtaaacattaaacatgaatcttgtagatgtagttcaagc |
43411743 |
T |
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| Q |
217 |
atgcatatgaaaattggtaattcaggacctcaagtcaatatcctataaatttgactttatgtataaagcgcagacatctttaacttatacttcaagta |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43411744 |
atgcatatgaaaattggtaattcaggacctcaagtcaatatcctataaatttgactttatgtataaagcgcagacatctttaacttatacttcaagta |
43411841 |
T |
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Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 88 - 133
Target Start/End: Complemental strand, 31534910 - 31534865
Alignment:
| Q |
88 |
tttaaaatcttccaaaaatgtcaaatttatgacaatcataagcaaa |
133 |
Q |
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|||| |||||||| ||||||||||| |||||||||||||||||||| |
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| T |
31534910 |
tttagaatcttcctaaaatgtcaaacttatgacaatcataagcaaa |
31534865 |
T |
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