View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14484_high_5 (Length: 637)
Name: NF14484_high_5
Description: NF14484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14484_high_5 |
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| [»] scaffold0305 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 314; Significance: 1e-177; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 18 - 510
Target Start/End: Complemental strand, 31913962 - 31913474
Alignment:
| Q |
18 |
aaatgatgttgttgttgttgatttatgccatgagtattcataattatgaagttgtggtgatttggggtattcttcaacgacccagttcatttttacatta |
117 |
Q |
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| T |
31913962 |
aaatgatgttgttgttgttgatttatgtcatgagtattcataattatgaagttgtggtgttttggggtattcttcaacgacctagttcatttttacatta |
31913863 |
T |
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| Q |
118 |
aaaattgnnnnnnnaagtgttatttcgtatgatttggatgatatctttaactgattttttagctttagcttggttttgataagttga-ttttgaagaaga |
216 |
Q |
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||||||| ||||||||||| ||||||| |||||||| |||||||||| | ||||||||||||||||||||||||||||||| |||| |||| | |
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| T |
31913862 |
aaaattgtttttttaagtgttattttgtatgatctggatgatttctttaactggtgttttagctttagcttggttttgataagttgatttttaaagataa |
31913763 |
T |
|
| Q |
217 |
actatttcaaattgggggtatgatattaaatttgtgaactttgatgtgatattggaagaaggaaaaatctgaaatttgtgttattaaatgtgattatcaa |
316 |
Q |
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|||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |
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| T |
31913762 |
actattacaaactgggggtatgatattaaatttgtgaactttgatgtgatattggaagaaggaaaaatctgaaatttatgttattaaatgtgtttatcaa |
31913663 |
T |
|
| Q |
317 |
ataagnnnnnnnctcgcttgttttcaattatatgatattaaagttgtgtcatggaattggagtctgagtcgcttgaagattgtttaatgtcttttttatt |
416 |
Q |
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| T |
31913662 |
ataagtttttt--tagcttgttttcaattatatgatattaaagttgtgtcgtggaattggagtctaagtcgcttgaagattgtttcatgtcttttttatg |
31913565 |
T |
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| Q |
417 |
agtgtgttggaatccgagagattgtgtcttatggtaacatctagacattgaagatgttttatattccgaggagggggcagaagtggcattaaga |
510 |
Q |
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| T |
31913564 |
agtgtgttggaatccgagagattgtgtcttacggtaacat---gacgttgaagatgttgtattttccggggagggggcagtagtgggattaaga |
31913474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 568 - 623
Target Start/End: Complemental strand, 31913416 - 31913361
Alignment:
| Q |
568 |
gccatatatgattgaattggattcttttagtttttggttagtagttagtgcctttg |
623 |
Q |
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| T |
31913416 |
gccatatatgattgaatttgagtcttttagtttttggttaagagttagtgcctttg |
31913361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 88; Significance: 6e-42; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 90 - 321
Target Start/End: Original strand, 4315176 - 4315404
Alignment:
| Q |
90 |
ttcaacgacccagttcattttt-acattaaaaattgnnnnnnnaagtgttatttcgtatgatttggatgatatctttaactgattttttagctttagctt |
188 |
Q |
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||||| |||||||||||||||| ||| ||||||||| |||||||||||| |||||| || ||||| ||||||| | | ||||| ||||||||| |
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| T |
4315176 |
ttcaatgacccagttcattttttacactaaaaattgtttttt-aagtgttatttcttatgatctgaatgatttctttaatgggtgttttaactttagctt |
4315274 |
T |
|
| Q |
189 |
ggttttgataagttgattttgaagaagaactatttcaaattgggggtatgatattaaatttgtgaactttgatgtgatattggaagaaggaaaaatctga |
288 |
Q |
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| T |
4315275 |
gattttgataagttgattttgaagatgaactattt-gaattgggggtatggtaataaagtactgaactttgatgtgatctttgaagaaggaaaaatctga |
4315373 |
T |
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| Q |
289 |
aatttgtgttattaaatgtgattatcaaataag |
321 |
Q |
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|| | |||||||||||||| |||||||||||| |
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| T |
4315374 |
aa--tctgttattaaatgtgtttatcaaataag |
4315404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0305 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: scaffold0305
Description:
Target: scaffold0305; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 22 - 76
Target Start/End: Complemental strand, 2652 - 2598
Alignment:
| Q |
22 |
gatgttgttgttgttgatttatgccatgagtattcataattatgaagttgtggtg |
76 |
Q |
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| T |
2652 |
gatgctgttgttgttgatttatgccatgggtattcataattatggagttgtggtg |
2598 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.000000000001; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 22 - 76
Target Start/End: Complemental strand, 11828425 - 11828371
Alignment:
| Q |
22 |
gatgttgttgttgttgatttatgccatgagtattcataattatgaagttgtggtg |
76 |
Q |
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| T |
11828425 |
gatgttgttgttgttgatttatgccattagaattcatgactatgaagttgtggtg |
11828371 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 23 - 76
Target Start/End: Complemental strand, 12390811 - 12390758
Alignment:
| Q |
23 |
atgttgttgttgttgatttatgccatgagtattcataattatgaagttgtggtg |
76 |
Q |
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| T |
12390811 |
atgttgttgttgttgatttatgccatggatattcataatcatggagttgtggtg |
12390758 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 24 - 72
Target Start/End: Original strand, 37916477 - 37916525
Alignment:
| Q |
24 |
tgttgttgttgttgatttatgccatgagtattcataattatgaagttgt |
72 |
Q |
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||||||||||||||||||||| ||||||| ||| | |||||||||||| |
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| T |
37916477 |
tgttgttgttgttgatttatgtcatgagtgttccaatttatgaagttgt |
37916525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 71
Target Start/End: Complemental strand, 17867011 - 17866962
Alignment:
| Q |
22 |
gatgttgttgttgttgatttatgccatgagtattcataattatgaagttg |
71 |
Q |
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|||||||||||||||||||||||||||| |||||||| ||||||||| |
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| T |
17867011 |
gatgttgttgttgttgatttatgccatggaaattcataacaatgaagttg |
17866962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 28 - 76
Target Start/End: Complemental strand, 12192437 - 12192389
Alignment:
| Q |
28 |
gttgttgttgatttatgccatgagtattcataattatgaagttgtggtg |
76 |
Q |
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||||||| ||||| |||| ||| ||||||||||||||| |||||||||| |
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| T |
12192437 |
gttgttgatgattcatgctatgggtattcataattatggagttgtggtg |
12192389 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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