View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14484_high_59 (Length: 280)

Name: NF14484_high_59
Description: NF14484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14484_high_59
NF14484_high_59
[»] chr4 (6 HSPs)
chr4 (1-220)||(48958270-48958489)
chr4 (70-220)||(48961419-48961569)
chr4 (4-180)||(48912182-48912358)
chr4 (31-178)||(48974274-48974421)
chr4 (51-180)||(48965492-48965621)
chr4 (223-267)||(48961481-48961525)
[»] chr8 (1 HSPs)
chr8 (1-180)||(12641315-12641494)
[»] scaffold0536 (3 HSPs)
scaffold0536 (1-175)||(10327-10501)
scaffold0536 (1-180)||(6345-6524)
scaffold0536 (6-61)||(1304-1359)
[»] chr2 (3 HSPs)
chr2 (1-180)||(13448526-13448705)
chr2 (1-180)||(13440363-13440542)
chr2 (94-177)||(13455000-13455083)
[»] chr7 (1 HSPs)
chr7 (1-180)||(3417364-3417543)
[»] chr5 (2 HSPs)
chr5 (31-180)||(28385497-28385646)
chr5 (4-180)||(12540848-12541024)
[»] chr6 (2 HSPs)
chr6 (1-180)||(12483298-12483477)
chr6 (1-180)||(12590003-12590182)


Alignment Details
Target: chr4 (Bit Score: 120; Significance: 2e-61; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 48958489 - 48958270
Alignment:
Q  1 tgttgtacatatgctttggaagcaattgttatttctctgataaacaattatatgagattgcgtgtggaatagaagcatcgggtcacgaatttgtatgggt 100  Q
    ||||||||||||||||||||||||  |||||||| |||||||||||| | ||||||||||||||||| ||||||||||| ||||||||||||||||||||    
T  48958489 tgttgtacatatgctttggaagcatatgttatttatctgataaacaactttatgagattgcgtgtgggatagaagcatcaggtcacgaatttgtatgggt 48958390  T
Q  101 tgttcctgaaaagaaagggaaagtggatgagagcgaagaggagaaagacaagtggttggcgaaaggatttgaagagagaagcatggatcagcagaatggt 200  Q
    ||||||||| |||||||||||||  || ||||| |||||||||||||  ||||||||| |||||||||| |||||||||| ||| |   || |||| |||    
T  48958389 tgttcctgagaagaaagggaaagaagacgagagtgaagaggagaaaggaaagtggttgccgaaaggattcgaagagagaaacattggaaagaagaaaggt 48958290  T
Q  201 ttgatcatcaaggggtgggc 220  Q
    |||||||| | |||||||||    
T  48958289 ttgatcattagggggtgggc 48958270  T

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Target: chr4; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 70 - 220
Target Start/End: Complemental strand, 48961569 - 48961419
Alignment:
Q  70 tagaagcatcgggtcacgaatttgtatgggttgttcctgaaaagaaagggaaagtggatgagagcgaagaggagaaagacaagtggttggcgaaaggatt 169  Q
    |||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  48961569 tagaagcatcgggtcacgaatttgtatgggttgttcctgagaaaaaagggaaagtggatgagagcgaagaggagaaagacaagtggttgccgaaaggatt 48961470  T
Q  170 tgaagagagaagcatggatcagcagaatggtttgatcatcaaggggtgggc 220  Q
    ||||||||||| ||| ||  || |||| ||||||||||| |||||||||||    
T  48961469 tgaagagagaaacattgaaaagaagaagggtttgatcattaaggggtgggc 48961419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 4 - 180
Target Start/End: Original strand, 48912182 - 48912358
Alignment:
Q  4 tgtacatatgctttggaagcaattgttatttctctgataaacaattatatgagattgcgtgtggaatagaagcatcgggtcacgaatttgtatgggttgt 103  Q
    |||||||||||||||||||| | ||| |||| || ||||||||| | |||||||||||||| || || ||||||||| ||||||||||  ||||||||||    
T  48912182 tgtacatatgctttggaagccaatgtcatttttcggataaacaactttatgagattgcgtgcgggattgaagcatcgagtcacgaattcatatgggttgt 48912281  T
Q  104 tcctgaaaagaaagggaaagtggatgagagcgaagaggagaaagacaagtggttggcgaaaggatttgaagagagaa 180  Q
    ||||||||||||| |||  | | |||| |  |||||||||||||| || |||||| | || || |||||||||||||    
T  48912282 tcctgaaaagaaacggacggagaatgacaatgaagaggagaaagaaaaatggttgccaaaggggtttgaagagagaa 48912358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 31 - 178
Target Start/End: Complemental strand, 48974421 - 48974274
Alignment:
Q  31 atttctctgataaacaattatatgagattgcgtgtggaatagaagcatcgggtcacgaatttgtatgggttgttcctgaaaagaaagggaaagtggatga 130  Q
    ||||| || |||| ||||| |||||||||||  | | ||||||||||||||||||| ||||  |||||||||| || || ||||||||||||| ||||||    
T  48974421 atttcactaataagcaattgtatgagattgcaagcgcaatagaagcatcgggtcaccaattcatatgggttgtccccgagaagaaagggaaagaggatga 48974322  T
Q  131 gagcgaagaggagaaagacaagtggttggcgaaaggatttgaagagag 178  Q
    |||| | || ||||| || |||||| || | || ||||||||||||||    
T  48974321 gagcaatgacgagaacgaaaagtggatgccaaagggatttgaagagag 48974274  T

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Target: chr4; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 51 - 180
Target Start/End: Complemental strand, 48965621 - 48965492
Alignment:
Q  51 tatgagattgcgtgtggaatagaagcatcgggtcacgaatttgtatgggttgttcctgaaaagaaagggaaagtggatgagagcgaagaggagaaagaca 150  Q
    |||||||||||||||| |||||||||||||||||| || ||| |||||||| ||||    || || ||||||| ||||||||| |||||||||||  | |    
T  48965621 tatgagattgcgtgtgcaatagaagcatcgggtcatgattttatatgggttattccccttaataacgggaaagaggatgagagtgaagaggagaagcaaa 48965522  T
Q  151 agtggttggcgaaaggatttgaagagagaa 180  Q
    |||||||  | || ||||| ||||||||||    
T  48965521 agtggttaccaaagggattcgaagagagaa 48965492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 223 - 267
Target Start/End: Original strand, 48961481 - 48961525
Alignment:
Q  223 caaccactagtctttctcctctgcgctcttatccactttcccttt 267  Q
    |||||||| ||||||||||||| |||||| |||||||||||||||    
T  48961481 caaccacttgtctttctcctcttcgctctcatccactttcccttt 48961525  T

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Target: chr8 (Bit Score: 84; Significance: 6e-40; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 1 - 180
Target Start/End: Original strand, 12641315 - 12641494
Alignment:
Q  1 tgttgtacatatgctttggaagcaattgttatttctctgataaacaattatatgagattgcgtgtggaatagaagcatcgggtcacgaatttgtatgggt 100  Q
    |||| |||||||| ||||| ||||  | ||||||||||||||||||| | || ||||||||| | |||||||||   || ||||||||||||||||||||    
T  12641315 tgttatacatatgttttgggagcatctcttatttctctgataaacaactttacgagattgcgagcggaatagaaaattcaggtcacgaatttgtatgggt 12641414  T
Q  101 tgttcctgaaaagaaagggaaagtggatgagagcgaagaggagaaagacaagtggttggcgaaaggatttgaagagagaa 180  Q
    ||||||||| ||||||||||||   |||||||| |||||||||||||| ||||||||| | |||||||| ||||||||||    
T  12641415 tgttcctgagaagaaagggaaaaaagatgagagtgaagaggagaaagaaaagtggttgcctaaaggattcgaagagagaa 12641494  T

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Target: scaffold0536 (Bit Score: 79; Significance: 5e-37; HSPs: 3)
Name: scaffold0536
Description:

Target: scaffold0536; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 175
Target Start/End: Original strand, 10327 - 10501
Alignment:
Q  1 tgttgtacatatgctttggaagcaattgttatttctctgataaacaattatatgagattgcgtgtggaatagaagcatcgggtcacgaatttgtatgggt 100  Q
    |||||||||| ||||||||||||   |||||||| || ||||||||| | ||||||||||||||  |  |||||||||||||| ||||||||||||| ||    
T  10327 tgttgtacatttgctttggaagcctatgttatttttcagataaacaactttatgagattgcgtgcagggtagaagcatcgggttacgaatttgtatgagt 10426  T
Q  101 tgttcctgaaaagaaagggaaagtggatgagagcgaagaggagaaagacaagtggttggcgaaaggatttgaaga 175  Q
    ||||||||| ||||||||||||| | |||||||  ||||||||||||| || ||| |  ||||||||||||||||    
T  10427 tgttcctgagaagaaagggaaagagaatgagagtcaagaggagaaagaaaaatggctaccgaaaggatttgaaga 10501  T

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Target: scaffold0536; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 1 - 180
Target Start/End: Original strand, 6345 - 6524
Alignment:
Q  1 tgttgtacatatgctttggaagcaattgttatttctctgataaacaattatatgagattgcgtgtggaatagaagcatcgggtcacgaatttgtatgggt 100  Q
    |||||||||||||||||||||||   ||   |||| | ||||||||| | || |||||||| ||||| |||||||||||||||||| ||||  |||||||    
T  6345 tgttgtacatatgctttggaagcttatgccttttcccggataaacaactttacgagattgcatgtgggatagaagcatcgggtcacaaattcatatgggt 6444  T
Q  101 tgttcctgaaaagaaagggaaagtggatgagagcgaagaggagaaagacaagtggttggcgaaaggatttgaagagagaa 180  Q
    ||||||||| |||||||||||||  |||||||| |||||||||||||  || |||||| | || ||||| ||||||||||    
T  6445 tgttcctgagaagaaagggaaagaagatgagagtgaagaggagaaaggaaaatggttgccaaagggattcgaagagagaa 6524  T

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Target: scaffold0536; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 6 - 61
Target Start/End: Original strand, 1304 - 1359
Alignment:
Q  6 tacatatgctttggaagcaattgttatttctctgataaacaattatatgagattgc 61  Q
    |||||||||||||||| |  ||| |||||| ||||||||||||| |||||||||||    
T  1304 tacatatgctttggaaccttttgctatttccctgataaacaattgtatgagattgc 1359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 76; Significance: 3e-35; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 13448705 - 13448526
Alignment:
Q  1 tgttgtacatatgctttggaagcaattgttatttctctgataaacaattatatgagattgcgtgtggaatagaagcatcgggtcacgaatttgtatgggt 100  Q
    ||||||||||||| ||||||||||     ||||| |||||||||||| |||| ||||| || ||||  ||||||||||| ||||||  |||  |||||||    
T  13448705 tgttgtacatatgttttggaagcatcaactatttttctgataaacaactatacgagatggcatgtgcgatagaagcatccggtcacccattcatatgggt 13448606  T
Q  101 tgttcctgaaaagaaagggaaagtggatgagagcgaagaggagaaagacaagtggttggcgaaaggatttgaagagagaa 180  Q
    ||||||||| |||||||||||||  |||||||||||||| |||||||| ||||||||  |||| ||||||||||||||||    
T  13448605 tgttcctgagaagaaagggaaagaagatgagagcgaagaagagaaagaaaagtggttaccgaagggatttgaagagagaa 13448526  T

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Target: chr2; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 13440542 - 13440363
Alignment:
Q  1 tgttgtacatatgctttggaagcaattgttatttctctgataaacaattatatgagattgcgtgtggaatagaagcatcgggtcacgaatttgtatgggt 100  Q
    ||||||||||||| ||||||||||     |||||||||||||||||| |||||||||| ||||| | ||||||||||||  |||||  |||  |||||||    
T  13440542 tgttgtacatatgttttggaagcatcaactatttctctgataaacaactatatgagatggcgtgcgcaatagaagcatctagtcacccattcatatgggt 13440443  T
Q  101 tgttcctgaaaagaaagggaaagtggatgagagcgaagaggagaaagacaagtggttggcgaaaggatttgaagagagaa 180  Q
    ||||||||| |||||||||||||  |||||||| || || |||||||| ||||||||| | || ||||| ||||||||||    
T  13440442 tgttcctgagaagaaagggaaagaagatgagagtgaggaagagaaagaaaagtggttgccaaagggattcgaagagagaa 13440363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 94 - 177
Target Start/End: Complemental strand, 13455083 - 13455000
Alignment:
Q  94 tatgggttgttcctgaaaagaaagggaaagtggatgagagcgaagaggagaaagacaagtggttggcgaaaggatttgaagaga 177  Q
    ||||||||||||| || |||||||||||||  ||||||||||||||||||||| | ||||||||| |||| |||||||||||||    
T  13455083 tatgggttgttccggagaagaaagggaaagaagatgagagcgaagaggagaaacaaaagtggttgccgaagggatttgaagaga 13455000  T

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Target: chr7 (Bit Score: 72; Significance: 8e-33; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 1 - 180
Target Start/End: Original strand, 3417364 - 3417543
Alignment:
Q  1 tgttgtacatatgctttggaagcaattgttatttctctgataaacaattatatgagattgcgtgtggaatagaagcatcgggtcacgaatttgtatgggt 100  Q
    ||||||||||||| |||||||||      |||||||||||||||||| ||||||||||||| |  | |||||||||||||||||||  |||  |||||||    
T  3417364 tgttgtacatatgttttggaagcttaaactatttctctgataaacaactatatgagattgcatacgcaatagaagcatcgggtcacccattcatatgggt 3417463  T
Q  101 tgttcctgaaaagaaagggaaagtggatgagagcgaagaggagaaagacaagtggttggcgaaaggatttgaagagagaa 180  Q
    ||||| ||| |||||||| ||||  ||||||| |||||| |||||||| ||||||||| |||| |||||||| |||||||    
T  3417464 tgttcttgagaagaaaggaaaagaagatgagaacgaagaagagaaagaaaagtggttgccgaagggatttgaggagagaa 3417543  T

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Target: chr5 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 31 - 180
Target Start/End: Complemental strand, 28385646 - 28385497
Alignment:
Q  31 atttctctgataaacaattatatgagattgcgtgtggaatagaagcatcgggtcacgaatttgtatgggttgttcctgaaaagaaagggaaagtggatga 130  Q
    ||||||||||||||||| ||||||||||||| || | | |||||||||| ||||||  |||  |||||||||||||||| |||||||||||||  |||||    
T  28385646 atttctctgataaacaactatatgagattgcatgcgcagtagaagcatcaggtcacccattcatatgggttgttcctgagaagaaagggaaagaagatga 28385547  T
Q  131 gagcgaagaggagaaagacaagtggttggcgaaaggatttgaagagagaa 180  Q
    || |||||| |||||||| |||||| || | || |||||||| |||||||    
T  28385546 gatcgaagaagagaaagaaaagtggctgccaaagggatttgaggagagaa 28385497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 4 - 180
Target Start/End: Complemental strand, 12541024 - 12540848
Alignment:
Q  4 tgtacatatgctttggaagcaattgttatttctctgataaacaattatatgagattgcgtgtggaatagaagcatcgggtcacgaatttgtatgggttgt 103  Q
    |||||||||| ||||||||||    | |||||| ||| |||||| ||||||||||||| |||| | |||||| |  |||||||  |||  ||||||||||    
T  12541024 tgtacatatgttttggaagcataaatcatttctttgacaaacaactatatgagattgcatgtgcagtagaaggaatgggtcacccattcatatgggttgt 12540925  T
Q  104 tcctgaaaagaaagggaaagtggatgagagcgaagaggagaaagacaagtggttggcgaaaggatttgaagagagaa 180  Q
    |||||| |||| ||||||||  |||||||  ||||| |||||||| |||||| || |||| |||||||| |||||||    
T  12540924 tcctgagaagagagggaaagaagatgagactgaagaagagaaagaaaagtggatgccgaagggatttgaggagagaa 12540848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 64; Significance: 5e-28; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 180
Target Start/End: Original strand, 12483298 - 12483477
Alignment:
Q  1 tgttgtacatatgctttggaagcaattgttatttctctgataaacaattatatgagattgcgtgtggaatagaagcatcgggtcacgaatttgtatgggt 100  Q
    ||||||||||||||||||| |||   ||  ||||||||||||||||  | || || ||| | || |||||||||||||||||| |  ||||  |||||||    
T  12483298 tgttgtacatatgctttgggagcctatgcaatttctctgataaacagctttacgaaatttcatgcggaatagaagcatcgggtaaaaaattcatatgggt 12483397  T
Q  101 tgttcctgaaaagaaagggaaagtggatgagagcgaagaggagaaagacaagtggttggcgaaaggatttgaagagagaa 180  Q
    ||||||||| || |||||||| |  ||||||||||| ||||||||||| ||||||||| |||| |||||||| |||||||    
T  12483398 tgttcctgagaaaaaagggaaggaagatgagagcgatgaggagaaagaaaagtggttgccgaagggatttgaggagagaa 12483477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 180
Target Start/End: Original strand, 12590003 - 12590182
Alignment:
Q  1 tgttgtacatatgctttggaagcaattgttatttctctgataaacaattatatgagattgcgtgtggaatagaagcatcgggtcacgaatttgtatgggt 100  Q
    ||||||||||||||||||| ||||  || |||||||| ||||||||| | ||||||||| ||||||| ||||||||||| || |||||||| ||||||||    
T  12590003 tgttgtacatatgctttgggagcatatgctatttctcagataaacaactttatgagatttcgtgtggcatagaagcatcaggccacgaattcgtatgggt 12590102  T
Q  101 tgttcctgaaaagaaagggaaagtggatgagagcgaagaggagaaagacaagtggttggcgaaaggatttgaagagagaa 180  Q
    | |||| || || |||||||| |  |||||||| || ||||| ||| | || |||||| | |  ||||||||||||||||    
T  12590103 tattcccgagaaaaaagggaaggaagatgagagtgatgaggataaacaaaaatggttgcctagtggatttgaagagagaa 12590182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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