View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14484_high_68 (Length: 250)

Name: NF14484_high_68
Description: NF14484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14484_high_68
NF14484_high_68
[»] chr8 (3 HSPs)
chr8 (14-196)||(43108693-43108875)
chr8 (125-195)||(7637592-7637662)
chr8 (149-182)||(38894490-38894523)
[»] chr4 (10 HSPs)
chr4 (127-195)||(16692092-16692160)
chr4 (123-195)||(44540181-44540253)
chr4 (124-195)||(19399850-19399921)
chr4 (124-196)||(37861178-37861250)
chr4 (136-188)||(49014507-49014559)
chr4 (124-196)||(46963922-46963994)
chr4 (142-188)||(22432131-22432177)
chr4 (134-196)||(30468739-30468801)
chr4 (156-184)||(2324230-2324258)
chr4 (144-196)||(53671611-53671663)
[»] chr5 (6 HSPs)
chr5 (124-196)||(523643-523715)
chr5 (124-191)||(5736058-5736125)
chr5 (124-195)||(6825444-6825515)
chr5 (136-196)||(30240-30300)
chr5 (149-196)||(3333340-3333387)
chr5 (134-186)||(14631467-14631520)
[»] chr1 (7 HSPs)
chr1 (124-196)||(34462737-34462809)
chr1 (134-196)||(1640245-1640307)
chr1 (124-196)||(18919273-18919345)
chr1 (146-196)||(40619575-40619625)
chr1 (125-196)||(37705329-37705400)
chr1 (149-182)||(51920119-51920152)
chr1 (127-187)||(8301760-8301820)
[»] chr6 (3 HSPs)
chr6 (124-193)||(2588781-2588850)
chr6 (136-195)||(31954809-31954868)
chr6 (129-195)||(357166-357232)
[»] chr7 (4 HSPs)
chr7 (136-195)||(16831659-16831718)
chr7 (137-195)||(39511188-39511246)
chr7 (134-196)||(47375856-47375918)
chr7 (139-196)||(38850519-38850576)
[»] chr2 (4 HSPs)
chr2 (125-196)||(5577983-5578054)
chr2 (149-196)||(4570804-4570851)
chr2 (127-160)||(32644921-32644954)
chr2 (127-195)||(20556764-20556832)
[»] chr3 (1 HSPs)
chr3 (134-195)||(39956206-39956266)


Alignment Details
Target: chr8 (Bit Score: 119; Significance: 7e-61; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 14 - 196
Target Start/End: Complemental strand, 43108875 - 43108693
Alignment:
Q  14 aaatacatatatgtatataagggtcggtgaaaaattaaccacaaaatttttcggtgtaatatgaatcactcatacaaatgtagtannnnnnn-agggaaa 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | ||||||||||        |||||||    
T  43108875 aaatacatatatgtatataagggtcggtgaaaaattaaccacaaaaattttcggtgtaatatgaatcactcaga-aaatgtagtattttttttagggaaa 43108777  T
Q  113 tgtcatattgccccttaagatacaagtttagaagccaaatataaaaatttaattttaaaaattgtgcattcaatatcttgaaag 196  Q
    ||||||| |||||||||||||||||||||||||||| |||||||||| |||||||| ||||||||||||| |||||||||||||    
T  43108776 tgtcatactgccccttaagatacaagtttagaagccgaatataaaaacttaattttgaaaattgtgcatttaatatcttgaaag 43108693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 195
Target Start/End: Original strand, 7637592 - 7637662
Alignment:
Q  125 ccttaagatacaagtttagaagccaaatataaaaatttaattttaaaaattgtgcattcaatatcttgaaa 195  Q
    |||||||  ||||||||||||| ||||| || || |||  |||| ||||||||||||||||| ||||||||    
T  7637592 ccttaaggcacaagtttagaagtcaaatgtagaatttttcttttgaaaattgtgcattcaatgtcttgaaa 7637662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 149 - 182
Target Start/End: Original strand, 38894490 - 38894523
Alignment:
Q  149 aaatataaaaatttaattttaaaaattgtgcatt 182  Q
    |||||||||||||||||||| |||||||||||||    
T  38894490 aaatataaaaatttaattttgaaaattgtgcatt 38894523  T

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Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 127 - 195
Target Start/End: Original strand, 16692092 - 16692160
Alignment:
Q  127 ttaagatacaagtttagaagccaaatataaaaatttaattttaaaaattgtgcattcaatatcttgaaa 195  Q
    |||||| | |||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||    
T  16692092 ttaagacataagtttagaagccaaatataaaaatttatttttgaaaattgtgcattcaatatcttgaaa 16692160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 123 - 195
Target Start/End: Complemental strand, 44540253 - 44540181
Alignment:
Q  123 ccccttaagatacaagtttagaagccaaatataaaaatttaattttaaaaattgtgcattcaatatcttgaaa 195  Q
    |||||||||  ||||||||||||||||||  |||||||||| ||||| ||||||||||||| || ||||||||    
T  44540253 ccccttaaggaacaagtttagaagccaaacgtaaaaatttatttttagaaattgtgcattcgatgtcttgaaa 44540181  T

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Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 124 - 195
Target Start/End: Original strand, 19399850 - 19399921
Alignment:
Q  124 cccttaagatacaagtttagaagccaaatataaaaatttaattttaaaaattgtgcattcaatatcttgaaa 195  Q
    ||||||||| |||||||||| ||||||||||| ||| ||| ||||  |||||||||||||||| ||||||||    
T  19399850 cccttaagacacaagtttagtagccaaatatagaaacttatttttggaaattgtgcattcaatgtcttgaaa 19399921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 124 - 196
Target Start/End: Original strand, 37861178 - 37861250
Alignment:
Q  124 cccttaagatacaagtttagaagccaaatataaaaatttaattttaaaaattgtgcattcaatatcttgaaag 196  Q
    ||||||||  |||||||||||| |||||| || ||| ||||||||  |||||||||||||||| |||||||||    
T  37861178 cccttaaggcacaagtttagaaaccaaatgtagaaacttaattttggaaattgtgcattcaatgtcttgaaag 37861250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 136 - 188
Target Start/End: Original strand, 49014507 - 49014559
Alignment:
Q  136 aagtttagaagccaaatataaaaatttaattttaaaaattgtgcattcaatat 188  Q
    ||||||| |||||||||||||||||||||||||   |||||||||||||||||    
T  49014507 aagtttaaaagccaaatataaaaatttaattttgggaattgtgcattcaatat 49014559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 124 - 196
Target Start/End: Complemental strand, 46963994 - 46963922
Alignment:
Q  124 cccttaagatacaagtttagaagccaaatataaaaatttaattttaaaaattgtgcattcaatatcttgaaag 196  Q
    ||||||||  |||||||||||| |||||| || ||| ||||||||  |||| ||||||||||| |||||||||    
T  46963994 cccttaaggcacaagtttagaaaccaaatgtagaaacttaattttggaaatcgtgcattcaatgtcttgaaag 46963922  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 188
Target Start/End: Complemental strand, 22432177 - 22432131
Alignment:
Q  142 agaagccaaatataaaaatttaattttaaaaattgtgcattcaatat 188  Q
    |||| |||||||||||||| |||| |||||||||||| |||||||||    
T  22432177 agaaaccaaatataaaaatataatcttaaaaattgtgaattcaatat 22432131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 196
Target Start/End: Complemental strand, 30468801 - 30468739
Alignment:
Q  134 acaagtttagaagccaaatataaaaatttaattttaaaaattgtgcattcaatatcttgaaag 196  Q
    |||||||||||| ||||||||| ||| ||||||||  ||||||| |||||||| | |||||||    
T  30468801 acaagtttagaaaccaaatatagaaacttaattttggaaattgtacattcaatttgttgaaag 30468739  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 184
Target Start/End: Complemental strand, 2324258 - 2324230
Alignment:
Q  156 aaaatttaattttaaaaattgtgcattca 184  Q
    |||||||||||||||||||||||||||||    
T  2324258 aaaatttaattttaaaaattgtgcattca 2324230  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 196
Target Start/End: Complemental strand, 53671663 - 53671611
Alignment:
Q  144 aagccaaatataaaaatttaattttaaaaattgtgcattcaatatcttgaaag 196  Q
    |||||||||||| |||  ||||||| ||||||||||||||||| |||| ||||    
T  53671663 aagccaaatatataaacataattttgaaaattgtgcattcaatgtcttaaaag 53671611  T

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Target: chr5 (Bit Score: 49; Significance: 4e-19; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 124 - 196
Target Start/End: Original strand, 523643 - 523715
Alignment:
Q  124 cccttaagatacaagtttagaagccaaatataaaaatttaattttaaaaattgtgcattcaatatcttgaaag 196  Q
    ||||||||  |||||||||||||||||||||||||||||| |||| ||||||||||||| ||| |||||||||    
T  523643 cccttaaggcacaagtttagaagccaaatataaaaatttatttttgaaaattgtgcatttaatgtcttgaaag 523715  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 124 - 191
Target Start/End: Complemental strand, 5736125 - 5736058
Alignment:
Q  124 cccttaagatacaagtttagaagccaaatataaaaatttaattttaaaaattgtgcattcaatatctt 191  Q
    |||||||||||||||||||| |||||||| || ||| ||| ||||  |||||||||||||||| ||||    
T  5736125 cccttaagatacaagtttagtagccaaatgtagaaacttatttttggaaattgtgcattcaatgtctt 5736058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 124 - 195
Target Start/End: Complemental strand, 6825515 - 6825444
Alignment:
Q  124 cccttaagatacaagtttagaagccaaatataaaaatttaattttaaaaattgtgcattcaatatcttgaaa 195  Q
    ||||||||  ||||||||| ||||||||  |||||| ||| |||| ||||||||||||||||| ||||||||    
T  6825515 cccttaaggcacaagtttaaaagccaaacgtaaaaacttatttttgaaaattgtgcattcaatgtcttgaaa 6825444  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 136 - 196
Target Start/End: Original strand, 30240 - 30300
Alignment:
Q  136 aagtttagaagccaaatataaaaatttaattttaaaaattgtgcattcaatatcttgaaag 196  Q
    ||||| ||||||||||| || ||||| |||||| |||||||| |||||||| |||||||||    
T  30240 aagttaagaagccaaatgtagaaattgaattttgaaaattgtccattcaatgtcttgaaag 30300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 149 - 196
Target Start/End: Complemental strand, 3333387 - 3333340
Alignment:
Q  149 aaatataaaaatttaattttaaaaattgtgcattcaatatcttgaaag 196  Q
    |||||||||||| ||||||| |||||| ||||||||||| ||||||||    
T  3333387 aaatataaaaatataattttgaaaattatgcattcaataccttgaaag 3333340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 134 - 186
Target Start/End: Original strand, 14631467 - 14631520
Alignment:
Q  134 acaagtttagaagccaaatataaaaat-ttaattttaaaaattgtgcattcaat 186  Q
    ||||||| ||||| ||||||||||||  ||||||||||||||||| ||||||||    
T  14631467 acaagttaagaagtcaaatataaaaaacttaattttaaaaattgtacattcaat 14631520  T

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Target: chr1 (Bit Score: 45; Significance: 9e-17; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 124 - 196
Target Start/End: Original strand, 34462737 - 34462809
Alignment:
Q  124 cccttaagatacaagtttagaagccaaatataaaaatttaattttaaaaattgtgcattcaatatcttgaaag 196  Q
    ||||||||| ||||||||||||| ||||| || ||||||| |||| ||||||||||||||||| |||||||||    
T  34462737 cccttaagacacaagtttagaagtcaaatgtagaaatttatttttgaaaattgtgcattcaatgtcttgaaag 34462809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 134 - 196
Target Start/End: Complemental strand, 1640307 - 1640245
Alignment:
Q  134 acaagtttagaagccaaatataaaaatttaattttaaaaattgtgcattcaatatcttgaaag 196  Q
    |||||||||||||  |||| || ||| |||||||||||||||||||||||||| |||||||||    
T  1640307 acaagtttagaagttaaatgtagaaacttaattttaaaaattgtgcattcaatgtcttgaaag 1640245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 124 - 196
Target Start/End: Original strand, 18919273 - 18919345
Alignment:
Q  124 cccttaagatacaagtttagaagccaaatataaaaatttaattttaaaaattgtgcattcaatatcttgaaag 196  Q
    ||||||||  ||||||||| ||||||||| || ||| ||| |||| ||||||||||||||||| |||||||||    
T  18919273 cccttaaggcacaagtttataagccaaatgtagaaacttatttttgaaaattgtgcattcaatgtcttgaaag 18919345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 146 - 196
Target Start/End: Complemental strand, 40619625 - 40619575
Alignment:
Q  146 gccaaatataaaaatttaattttaaaaattgtgcattcaatatcttgaaag 196  Q
    ||||||| |||||| |||||||| |||||||||||||||||||||| ||||    
T  40619625 gccaaatgtaaaaacttaattttgaaaattgtgcattcaatatcttaaaag 40619575  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 125 - 196
Target Start/End: Original strand, 37705329 - 37705400
Alignment:
Q  125 ccttaagatacaagtttagaagccaaatataaaaatttaattttaaaaattgtgcattcaatatcttgaaag 196  Q
    |||||||| ||||||||||||| ||||| || ||| | ||||||||||||  |||||||||| | |||||||    
T  37705329 ccttaagacacaagtttagaagtcaaatgtagaaactaaattttaaaaataatgcattcaatgttttgaaag 37705400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 149 - 182
Target Start/End: Complemental strand, 51920152 - 51920119
Alignment:
Q  149 aaatataaaaatttaattttaaaaattgtgcatt 182  Q
    ||||||||||||||||||||| ||||||||||||    
T  51920152 aaatataaaaatttaattttagaaattgtgcatt 51920119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 187
Target Start/End: Complemental strand, 8301820 - 8301760
Alignment:
Q  127 ttaagatacaagtttagaagccaaatataaaaatttaattttaaaaattgtgcattcaata 187  Q
    |||||| ||||||| | ||  ||||| || ||| |||||||||||||||||||||||||||    
T  8301820 ttaagacacaagttaaaaaatcaaatgtagaaacttaattttaaaaattgtgcattcaata 8301760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 124 - 193
Target Start/End: Original strand, 2588781 - 2588850
Alignment:
Q  124 cccttaagatacaagtttagaagccaaatataaaaatttaattttaaaaattgtgcattcaatatcttga 193  Q
    ||||||||| ||||||||| || |||||| || ||| |||||||| ||||||||||||||||||||||||    
T  2588781 cccttaagacacaagtttataaaccaaatgtagaaacttaattttgaaaattgtgcattcaatatcttga 2588850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 136 - 195
Target Start/End: Original strand, 31954809 - 31954868
Alignment:
Q  136 aagtttagaagccaaatataaaaatttaattttaaaaattgtgcattcaatatcttgaaa 195  Q
    ||||||||||||||||| |||||| ||||||||| ||||| ||||| |||| ||||||||    
T  31954809 aagtttagaagccaaatgtaaaaacttaattttagaaattatgcatacaatgtcttgaaa 31954868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 129 - 195
Target Start/End: Original strand, 357166 - 357232
Alignment:
Q  129 aagatacaagtttagaagccaaatataaaaatttaattttaaaaattgtgcattcaatatcttgaaa 195  Q
    |||| |||| |||||||||||||| || ||||||| |||| ||||||||||||||||| | ||||||    
T  357166 aagacacaaatttagaagccaaatgtagaaatttatttttgaaaattgtgcattcaatgttttgaaa 357232  T

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Target: chr7 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 136 - 195
Target Start/End: Complemental strand, 16831718 - 16831659
Alignment:
Q  136 aagtttagaagccaaatataaaaatttaattttaaaaattgtgcattcaatatcttgaaa 195  Q
    |||| ||||||| |||| |||||||||| ||||| |||||||||||||||||||||||||    
T  16831718 aagtatagaagctaaatgtaaaaatttatttttagaaattgtgcattcaatatcttgaaa 16831659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 137 - 195
Target Start/End: Original strand, 39511188 - 39511246
Alignment:
Q  137 agtttagaagccaaatataaaaatttaattttaaaaattgtgcattcaatatcttgaaa 195  Q
    ||||||||||||| || |||||| ||| ||||| |||||||||||||||| ||||||||    
T  39511188 agtttagaagccagatgtaaaaacttatttttagaaattgtgcattcaatgtcttgaaa 39511246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 196
Target Start/End: Complemental strand, 47375918 - 47375856
Alignment:
Q  134 acaagtttagaagccaaatataaaaatttaattttaaaaattgtgcattcaatatcttgaaag 196  Q
    |||||||||||| |||||| || ||| ||| ||||  |||||||||||||||| |||||||||    
T  47375918 acaagtttagaatccaaatgtagaaacttatttttggaaattgtgcattcaatgtcttgaaag 47375856  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 196
Target Start/End: Original strand, 38850519 - 38850576
Alignment:
Q  139 tttagaagccaaatataaaaatttaattttaaaaattgtgcattcaatatcttgaaag 196  Q
    |||||||| ||||| || |||||| || |||||||||||||||||||| | |||||||    
T  38850519 tttagaagtcaaatgtagaaattttatgttaaaaattgtgcattcaatgttttgaaag 38850576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 125 - 196
Target Start/End: Original strand, 5577983 - 5578054
Alignment:
Q  125 ccttaagatacaagtttagaagccaaatataaaaatttaattttaaaaattgtgcattcaatatcttgaaag 196  Q
    |||||||  |||||||||||| |||||| |  ||||||||||||  |||||||||||| |||||||||||||    
T  5577983 ccttaaggcacaagtttagaaaccaaatgtcgaaatttaattttggaaattgtgcatttaatatcttgaaag 5578054  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 149 - 196
Target Start/End: Complemental strand, 4570851 - 4570804
Alignment:
Q  149 aaatataaaaatttaattttaaaaattgtgcattcaatatcttgaaag 196  Q
    ||||||||||| ||||||||||||||||| |||||||| |||| ||||    
T  4570851 aaatataaaaaattaattttaaaaattgtacattcaatgtcttaaaag 4570804  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 127 - 160
Target Start/End: Complemental strand, 32644954 - 32644921
Alignment:
Q  127 ttaagatacaagtttagaagccaaatataaaaat 160  Q
    |||||| |||||||||||||||||||||||||||    
T  32644954 ttaagacacaagtttagaagccaaatataaaaat 32644921  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 195
Target Start/End: Original strand, 20556764 - 20556832
Alignment:
Q  127 ttaagatacaagtttagaagccaaatataaaaatttaattttaaaaattgtgcattcaatatcttgaaa 195  Q
    |||||| |||||||||||| | |||| || ||| ||||||||  |||| ||||||||||| ||||||||    
T  20556764 ttaagacacaagtttagaaactaaatgtagaaacttaattttggaaatcgtgcattcaatgtcttgaaa 20556832  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 134 - 195
Target Start/End: Complemental strand, 39956266 - 39956206
Alignment:
Q  134 acaagtttagaagccaaatataaaaatttaattttaaaaattgtgcattcaatatcttgaaa 195  Q
    ||||||||||||||||||  || ||||||| |||| ||||||||||||||||| || |||||    
T  39956266 acaagtttagaagccaaag-tagaaatttatttttgaaaattgtgcattcaatgtcatgaaa 39956206  T

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