View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14484_high_69 (Length: 244)
Name: NF14484_high_69
Description: NF14484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14484_high_69 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 16 - 244
Target Start/End: Complemental strand, 35600335 - 35600107
Alignment:
| Q |
16 |
aatatcttttgtttgttcagtttaatagctgggtgcctgatactgtgacatctcaaaacaaaacacttattatgttcctttaatnnnnnnntaacagatt |
115 |
Q |
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| T |
35600335 |
aatatcatttgtttgttcagtttaatagctgggtgcctgatattgtgacatctcaaaacaaaacacttattatgttcctttaataaaaaaataacagatt |
35600236 |
T |
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| Q |
116 |
gaagcaatagttcaagatgccactgcagatggttttatctccagcattgatgctctcaatcttaatttggaaagccaggttataaactttcacctgccta |
215 |
Q |
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| T |
35600235 |
gaagcaatagttcaagatgccactgcagatggttttatctccagcattggtgctctcaatcttaatttggaaagccaggttataaactttcacctgccta |
35600136 |
T |
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| Q |
216 |
catttttctgctcatcaaaaattgaattt |
244 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
35600135 |
catttttctgctcatcaaaaattgaattt |
35600107 |
T |
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