View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14484_high_71 (Length: 242)
Name: NF14484_high_71
Description: NF14484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14484_high_71 |
 | |
|
| [»] chr5 (3 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 201; Significance: 1e-110; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 17 - 242
Target Start/End: Original strand, 4893550 - 4893775
Alignment:
| Q |
17 |
ttcatatgatgtgaattaattggtgcaaagttgttacaactactatataggtagctattaattataggaattttagcatctaagtaaactttattatgtt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4893550 |
ttcatatgatgtgaattaattggtgcaaggttgttacaactactatataggtagctattaattataggaattttagcatctaagtaaactttattatgtt |
4893649 |
T |
|
| Q |
117 |
gtnnnnnnntctacagatggacaaggcttcagtcctaggagatgcaatcaagtacgtgaaagagctccaagaacgtttgagggtattagaggaacaaaac |
216 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4893650 |
gtaaaaaaatctacagatggacaaggcttcagtcctaggagatgcaatcaagtacgtgaaagagctccaagaacgtttgagggtattagaggaacaaaac |
4893749 |
T |
|
| Q |
217 |
aaaaatagtcatgttcagtctgtggt |
242 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
4893750 |
aaaaatagtcatgttcagtctgtggt |
4893775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 126 - 226
Target Start/End: Original strand, 4917113 - 4917213
Alignment:
| Q |
126 |
tctacagatggacaaggcttcagtcctaggagatgcaatcaagtacgtgaaagagctccaagaacgtttgagggtattagaggaacaaaacaaaaatagt |
225 |
Q |
| |
|
|||| |||||||||||||||||||| |||| ||||| |||||| | || ||||||||||||||||||||||| |||||||| ||||||||||| |||||| |
|
|
| T |
4917113 |
tctatagatggacaaggcttcagtcataggggatgctatcaagcatgtaaaagagctccaagaacgtttgagagtattagaagaacaaaacaagaatagt |
4917212 |
T |
|
| Q |
226 |
c |
226 |
Q |
| |
|
| |
|
|
| T |
4917213 |
c |
4917213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 129 - 228
Target Start/End: Original strand, 4910061 - 4910160
Alignment:
| Q |
129 |
acagatggacaaggcttcagtcctaggagatgcaatcaagtacgtgaaagagctccaagaacgtttgagggtattagaggaacaaaacaaaaatagtcat |
228 |
Q |
| |
|
||||| |||||| |||||||| |||||||||| |||||| | |||||||||||||| ||||||||||| |||||||| ||| | ||||| ||||||||| |
|
|
| T |
4910061 |
acagacggacaatacttcagtcataggagatgctatcaagcatgtgaaagagctccaggaacgtttgagagtattagaagaagagaacaagaatagtcat |
4910160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University