View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14484_high_78 (Length: 222)
Name: NF14484_high_78
Description: NF14484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14484_high_78 |
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| [»] scaffold0104 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 111; Significance: 3e-56; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 21464337 - 21464455
Alignment:
| Q |
1 |
gacccgaattgaagcatcaaaccaaacggaaggagcatttggaaccataaccgtgacacaacacgcaaacaacgaggccgtcggttcaatccagccgcaa |
100 |
Q |
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| T |
21464337 |
gacccgaattgaagcatcaaaccaaacggaaggagcatttggaaccataaccgtgacacaacacgcaaacaatgaggccgtcggttcaatccagccgcaa |
21464436 |
T |
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| Q |
101 |
aaggcatactatcaaaccg |
119 |
Q |
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| T |
21464437 |
acggcatactatcaaaccg |
21464455 |
T |
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Target: chr6; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 122 - 203
Target Start/End: Original strand, 21465162 - 21465244
Alignment:
| Q |
122 |
caaaagtgctctatattataggg-taaagctctgttaaccctttagtttgttacttatggataagcttgattagttggttaca |
203 |
Q |
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| T |
21465162 |
caaaagtgctctatattataggggtaaagctctattaatcctttagtttgttacttttggataagcttgattagttggttaca |
21465244 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 162 - 206
Target Start/End: Original strand, 21461978 - 21462022
Alignment:
| Q |
162 |
tttagtttgttacttatggataagcttgattagttggttacaaga |
206 |
Q |
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| T |
21461978 |
tttagtttgttacttttggataagcttgattagttagttacaaga |
21462022 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0104 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0104
Description:
Target: scaffold0104; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 47
Target Start/End: Complemental strand, 37905 - 37861
Alignment:
| Q |
3 |
cccgaattgaagcatcaaaccaaacggaaggagcatttggaacca |
47 |
Q |
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| T |
37905 |
cccgaattaaagcatcaaaccaaacagaaggagcattcggaacca |
37861 |
T |
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