View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14484_high_8 (Length: 586)
Name: NF14484_high_8
Description: NF14484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14484_high_8 |
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Alignment Details
Target: chr8 (Bit Score: 180; Significance: 6e-97; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 180; E-Value: 6e-97
Query Start/End: Original strand, 224 - 403
Target Start/End: Original strand, 40297264 - 40297443
Alignment:
| Q |
224 |
tacacctttaataaatattaacacgaaattaacaatatagttattgttcaattcaatttatgactaatttgacttgccttgttttagatttgagcttcta |
323 |
Q |
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| T |
40297264 |
tacacctttaataaatattaacacgaaattaacaatatagttattgttcaattcaatttatgactaatttgacttgccttgttttagatttgagcttcta |
40297363 |
T |
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| Q |
324 |
ttacactcctctggctcaacagaaggtacggatcttggtacaacctagaagcgaaaaaataaaacattacacaattcaac |
403 |
Q |
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| T |
40297364 |
ttacactcctctggctcaacagaaggtacggatcttggtacaacctagaagcgaaaaaataaaacattacacaattcaac |
40297443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 415 - 564
Target Start/End: Original strand, 40297467 - 40297616
Alignment:
| Q |
415 |
gaatgcgaaaaattaagttgaatgttgagatataagtaagataccttgcggacacattgggatgggataggacgaagatgaagaagattgggtttgcaga |
514 |
Q |
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| T |
40297467 |
gaatgcgaaaaattaagttgaatgttgagatataagtaagataccttgcggacacattgggatgggataggacgaagatgaagaagattgggtttgcaga |
40297566 |
T |
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| Q |
515 |
ctaattttaaggtcgaaattgccattgaaatggaaattctggtatgatcg |
564 |
Q |
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| T |
40297567 |
ctaattttaaggtcgaaattgccattgaaatggaaattctggtttgatcg |
40297616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 20 - 159
Target Start/End: Original strand, 40297060 - 40297199
Alignment:
| Q |
20 |
agacgcaacaaaacataccctttttcttcaacatgttgagaacctttttaattggactagcaatcatagaatttcgaaatccaagctcttttgaattcat |
119 |
Q |
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| T |
40297060 |
agacgcaacaaaacataccctttttcttcaacatgttgagaacctttttaattggactagcaatcatggaatttcgaaatccaagctcttttgaattcat |
40297159 |
T |
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| Q |
120 |
cttcttccatgctggtgccttcttatttacttgatcaatt |
159 |
Q |
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| T |
40297160 |
cttcttccatgccggtgccttcttatttacttgatcaatt |
40297199 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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