View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14484_high_86 (Length: 206)
Name: NF14484_high_86
Description: NF14484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14484_high_86 |
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Alignment Details
Target: chr7 (Bit Score: 165; Significance: 2e-88; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 17 - 189
Target Start/End: Complemental strand, 23855305 - 23855133
Alignment:
| Q |
17 |
accatcttgtaaatagggttgtatctgagaagtgtttcactcaaatggcctaatttttcttccacatatttgtattcaatacccttcaatttcagagcaa |
116 |
Q |
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| T |
23855305 |
accatcttgtaaatagggttgtatctgagaagtgtttcactcaaatggcctaatttttcttccacatatttgtattcaatacccttcaatttcagagcaa |
23855206 |
T |
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| Q |
117 |
tttgaactcttatcacaaatgggcttcccacagaacccaaaagcttcacaattgtagccattgtagcacttca |
189 |
Q |
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| T |
23855205 |
tttgaactcttatcacaaatggacttcccacagaacccaaaagcttcacaattgttgccattgtagcacttca |
23855133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 42 - 161
Target Start/End: Complemental strand, 23849034 - 23848915
Alignment:
| Q |
42 |
tgagaagtgtttcactcaaatggcctaatttttcttccacatatttgtattcaatacccttcaatttcagagcaatttgaactcttatcacaaatgggct |
141 |
Q |
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| T |
23849034 |
tgagaagtgtttcactcaaattacccaatttttcttcaacatatttgtgttcaattcccttcaattttagagcaatttgaactcttatcacaaatggact |
23848935 |
T |
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| Q |
142 |
tcccacagaacccaaaagct |
161 |
Q |
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| T |
23848934 |
tcccacagaacccagaagct |
23848915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 17 - 161
Target Start/End: Complemental strand, 23852930 - 23852786
Alignment:
| Q |
17 |
accatcttgtaaatagggttgtatctgagaagtgtttcactcaaatggcctaatttttcttccacatatttgtattcaatacccttcaatttcagagcaa |
116 |
Q |
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| T |
23852930 |
accatcttgtaaactggattgtaattgagaagtgtttcactcaaatagcccagtttttcttcaacatatttgtgttcaattcccttcaattttagagcaa |
23852831 |
T |
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| Q |
117 |
tttgaactcttatcacaaatgggcttcccacagaacccaaaagct |
161 |
Q |
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| T |
23852830 |
tttgaacccttatcacaaatggacttcccactgcacccaaaagct |
23852786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 17 - 165
Target Start/End: Complemental strand, 23838051 - 23837903
Alignment:
| Q |
17 |
accatcttgtaaatagggttgtatctgagaagtgtttcactcaaatggcctaatttttcttccacatatttgtattcaatacccttcaatttcagagcaa |
116 |
Q |
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| T |
23838051 |
accatcctgtaaactggattgtatttgagaagcgtttcactcaagttacccaatttttcttccgaatatttgtattcaatacccttcaattccaaggcaa |
23837952 |
T |
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| Q |
117 |
tttgaactcttatcacaaatgggcttcccacagaacccaaaagcttcac |
165 |
Q |
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| T |
23837951 |
tttgaactcgaataacaaatgggcttcccacagaacctaaaagcttcac |
23837903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 105 - 150
Target Start/End: Complemental strand, 23842865 - 23842820
Alignment:
| Q |
105 |
atttcagagcaatttgaactcttatcacaaatgggcttcccacaga |
150 |
Q |
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| T |
23842865 |
attttagagcaatttgaactctaatgacaaatgggcttcccacaga |
23842820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 119
Target Start/End: Original strand, 23828321 - 23828359
Alignment:
| Q |
81 |
catatttgtattcaatacccttcaatttcagagcaattt |
119 |
Q |
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| T |
23828321 |
catatttgtattcaacacccttcaattttagagcaattt |
23828359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 71 - 144
Target Start/End: Original strand, 23857477 - 23857550
Alignment:
| Q |
71 |
ttttcttccacatatttgtattcaatacccttcaatttcagagcaatttgaactcttatcacaaatgggcttcc |
144 |
Q |
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| T |
23857477 |
ttttcttcaagaaatttgtattcaattcccttcaattttagagcaatctgtaccctgcacacaaatgggcttcc |
23857550 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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