View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14484_low_10 (Length: 583)
Name: NF14484_low_10
Description: NF14484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14484_low_10 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 360; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 216 - 583
Target Start/End: Original strand, 13481283 - 13481650
Alignment:
| Q |
216 |
atggattttcatcttggtaatggtttatcttttccaagacttcaacttcataatcaccctcaaatttctactactcctatgtataaccagttttcatctt |
315 |
Q |
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| T |
13481283 |
atggattttcatcttggtagtggtttatcttttccaagacttcaacttcataatcaccctcaaatttctactactcctatgtataaccagttttcatctt |
13481382 |
T |
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| Q |
316 |
ttggagaaacttcttctgctatgaataataactatcatgcttcttcaaattctgctgctgctatgaactatcctttttcatcaggtaattataatggtgc |
415 |
Q |
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| T |
13481383 |
ttggagaaacttcttctgctatgaataataactatcatgcttcttcaaattctgctgctgctatgaactatcctttttcatcaggtaattataatggtgc |
13481482 |
T |
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| Q |
416 |
aatacaaggtatgagttcaatgaatattaatcatagcaataataatattgcttcttctattgaatcattgagttctatgaaccaagacttgcactggaag |
515 |
Q |
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| T |
13481483 |
aatacaaggtatgagttcaatgaatattaatcatagcaataataatattgcttcttctattgaatcattgagttctatgaaccaagacttgcactggaag |
13481582 |
T |
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| Q |
516 |
ctacagcatcaaagattatctatgctttttggtggtggagaaaatcagaaagatacagaaaagccact |
583 |
Q |
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| T |
13481583 |
ctacagcaacaaagattatctatgctttttggtggtggagaaaatcagaaagatacagaaaagccact |
13481650 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 153; E-Value: 8e-81
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 13481068 - 13481220
Alignment:
| Q |
1 |
gcttaacacaaccaagacatttctgcaaaacatgtagaagatattggacaaaaggtggagctttacgcaacgttccaatcggtggtggatgtagaaaaaa |
100 |
Q |
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| T |
13481068 |
gcttaacacaaccaagacatttctgcaaaacatgtagaagatattggacaaaaggtggagctttacgcaacgttccaatcggtggtggatgtagaaaaaa |
13481167 |
T |
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| Q |
101 |
caagaaaatgaaatcatcatcatcaagactctcttgtgattcaaaagactcag |
153 |
Q |
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| T |
13481168 |
caagaaaatgaaatcatcatcatcaagactctcttgtgattcaaaagactcag |
13481220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 4e-21; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 9 - 97
Target Start/End: Original strand, 28437370 - 28437458
Alignment:
| Q |
9 |
caaccaagacatttctgcaaaacatgtagaagatattggacaaaaggtggagctttacgcaacgttccaatcggtggtggatgtagaaa |
97 |
Q |
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| T |
28437370 |
caaccaagacatttctgcaaaacatgcagaagatattggacaaatggtggatcgttgcgtaacgttccgattggtggtggttgtagaaa |
28437458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 463 - 533
Target Start/End: Original strand, 28437815 - 28437885
Alignment:
| Q |
463 |
ttgcttcttctattgaatcattgagttctatgaaccaagacttgcactggaagctacagcatcaaagatta |
533 |
Q |
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| T |
28437815 |
ttgcttctagtattgaatcattgagttgtaggaaccaagatttgcatttgaagcttcagcagcaaagatta |
28437885 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 7 - 64
Target Start/End: Complemental strand, 5211259 - 5211202
Alignment:
| Q |
7 |
cacaaccaagacatttctgcaaaacatgtagaagatattggacaaaaggtggagcttt |
64 |
Q |
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| T |
5211259 |
cacaaccacgccatttttgcaaaaactgtaaaagatattggacaaaaggtggtgcttt |
5211202 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 6 - 59
Target Start/End: Original strand, 34646034 - 34646087
Alignment:
| Q |
6 |
acacaaccaagacatttctgcaaaacatgtagaagatattggacaaaaggtgga |
59 |
Q |
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| T |
34646034 |
acacaaccaagatatttctgcaaaacatgtagaaggtattggactcaaggtgga |
34646087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 24878894 - 24878952
Alignment:
| Q |
1 |
gcttaacacaaccaagacatttctgcaaaacatgtagaagatattggacaaaaggtgga |
59 |
Q |
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| T |
24878894 |
gcttaactcaaccaagatatttttgcaaaggatgcagaaggtattggacaaaaggtgga |
24878952 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 7 - 59
Target Start/End: Original strand, 35202376 - 35202428
Alignment:
| Q |
7 |
cacaaccaagacatttctgcaaaacatgtagaagatattggacaaaaggtgga |
59 |
Q |
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| T |
35202376 |
cacaaccaagacacttctgcaaagcctgtaaaagatattggacaagaggtgga |
35202428 |
T |
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