View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14484_low_11 (Length: 563)
Name: NF14484_low_11
Description: NF14484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14484_low_11 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 519; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 519; E-Value: 0
Query Start/End: Original strand, 19 - 557
Target Start/End: Original strand, 45802860 - 45803398
Alignment:
| Q |
19 |
tctcctagaccagaaaagtgaactgttgtactagagggaagccctggtaaaaccaaactgtgcacgcgaattccatctcccaaaacttgaccccttgcct |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45802860 |
tctcctagaccagaaaagtgaactgttgtactagagggaagccctggtaaaaccaaactgtgcacgcgaattccatctcccaaaacttgaccccttgcct |
45802959 |
T |
|
| Q |
119 |
ttgtcgtgtgataaataattaaatgaaacaagttagatatctcacttgtagtatttattgttgtgtgtattcatatgagctgaagttgtttatgtcctta |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45802960 |
ttgtcgtgtgataaataattaaatgaaacaagttagatatctcacctgtagtatttattgttgtgtgtattcatatgagctgaagttgtttatgtcctta |
45803059 |
T |
|
| Q |
219 |
ccaagacatctgttgaggagtcttctctgttatagatttgaccgaggttagagagattgttagcaatttggtttgcttctgctgatggaagatcctgtta |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45803060 |
ccaagacatctgttgaggagtcttctctgttatagatttgaccgaggttagagagattgttagcaatttggtttgcttctgctgatggaagatcctgtta |
45803159 |
T |
|
| Q |
319 |
aacaagggcttttcagtatatttggtttcaaattttttacacatttccgcgtgtccgtttagaactgaagattttattagatgtaaaagttagttatacc |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45803160 |
aacaagggcttttcagtatatttggtttcacattttttatacatttccgcgtgtccgtttagaactgaagattttattagatgtaaaagttagttatacc |
45803259 |
T |
|
| Q |
419 |
tgtcagttaagttagcttaactaactggtgtaacaaacttttacctctaaatagattttaccataagtggatattgaacataaacaaggaaaaatcaaag |
518 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45803260 |
tgtcagttaagttagcttaactaactggtgtaacaaacttttacctctaaatagattttaccataagtggatattgaacataaacaaggaaaaatcaaaa |
45803359 |
T |
|
| Q |
519 |
ttattcattcttacttacatttgcattagcctttgattc |
557 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
45803360 |
ttattcattcttacttacatttgcattagccttggattc |
45803398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University