View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14484_low_12 (Length: 550)

Name: NF14484_low_12
Description: NF14484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14484_low_12
NF14484_low_12
[»] chr6 (18 HSPs)
chr6 (11-531)||(26876815-26877335)
chr6 (165-265)||(26638813-26638913)
chr6 (165-265)||(26744779-26744879)
chr6 (147-238)||(26626514-26626605)
chr6 (147-238)||(26732491-26732582)
chr6 (171-252)||(26827272-26827353)
chr6 (168-239)||(26888243-26888314)
chr6 (165-239)||(31287987-31288064)
chr6 (165-265)||(26805931-26806031)
chr6 (165-239)||(28789775-28789849)
chr6 (165-235)||(28795793-28795863)
chr6 (168-240)||(27657419-27657494)
chr6 (165-199)||(26888393-26888427)
chr6 (170-227)||(26059309-26059366)
chr6 (170-227)||(26079279-26079336)
chr6 (166-238)||(25077396-25077468)
chr6 (209-265)||(26852014-26852070)
chr6 (165-213)||(27601248-27601296)
[»] chr4 (10 HSPs)
chr4 (171-265)||(18720791-18720885)
chr4 (165-265)||(18676261-18676361)
chr4 (171-265)||(18652203-18652297)
chr4 (171-265)||(18686301-18686395)
chr4 (171-265)||(18696107-18696201)
chr4 (169-239)||(18650567-18650638)
chr4 (171-265)||(18728227-18728321)
chr4 (171-239)||(18718786-18718855)
chr4 (177-239)||(18692303-18692366)
chr4 (203-239)||(18682989-18683025)
[»] scaffold0277 (2 HSPs)
scaffold0277 (165-239)||(10350-10424)
scaffold0277 (165-235)||(1394-1464)
[»] chr5 (1 HSPs)
chr5 (166-222)||(29766647-29766703)
[»] chr1 (2 HSPs)
chr1 (165-240)||(265010-265088)
chr1 (168-238)||(26139436-26139506)
[»] chr7 (1 HSPs)
chr7 (168-222)||(10675106-10675160)
[»] chr2 (1 HSPs)
chr2 (165-223)||(18514576-18514634)


Alignment Details
Target: chr6 (Bit Score: 501; Significance: 0; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 501; E-Value: 0
Query Start/End: Original strand, 11 - 531
Target Start/End: Original strand, 26876815 - 26877335
Alignment:
Q  11 gaagaaaatattagactatatagccaagattatcccgggaaactcgtttgtgaactggaggaagtactgttagaaaatgaatggatttatgtggagctta 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26876815 gaagaaaatattagactatatagccaagattatcccgggaaactcgtttgtgaactggaggaagtactgttagaaaatgaatggatttatgtggagctta 26876914  T
Q  111 agttgttagggaggtcattgaatccaagcgaggatgagattagaacattaagtcgtgcacaaatgggaatccacgtgttgaaggagaaaaacagcataga 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26876915 agttgttagggaggtcattgaatccaagcgaggatgagattagaacattaagtcgtgcacaaatgggaatccacgtgttgaaggagaaaaacagcataga 26877014  T
Q  211 ggaggatgtgatattcaccaatccttatatgaaaaagagaaagctagatgaatatttgaggacgtgagacttttcgtgggtgcaagaaaagaaaagaaaa 310  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  26877015 ggaggatgtgatattcaccaatccttatatgaaaaagagaaagctagatgaatatttgaggacgtgagacttttcgtgggtgcaagaagagaaaagaaaa 26877114  T
Q  311 ggataatcataaagttaactgtcttgttgttgttctctcaataagaggaagcttactccacaatctcaagattgcatgtttgtgattctgtaagtggatg 410  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  26877115 ggataatcataaagttaactgtcttgttgttgttctctcaataagaggaagcttactccacaatctcaagattgcatgtttgtgattctgtaagtgaatg 26877214  T
Q  411 atgtttgtgcagttcaaaatattgtctgaatttactgtgatggatgtttaatttgcagcatgatcgaagttgtgtttgctgttcgacatgtgtccatgta 510  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||     
T  26877215 atgtttgtgcagttcaaaatattgtctgaatttactgtgatggatgtttaatttgcagcatgatcgaagttgtgtttggtgttcgacatgtgtccatgtc 26877314  T
Q  511 cgttaccgacaattgtgatca 531  Q
    ||||||| |||||||||||||    
T  26877315 cgttacctacaattgtgatca 26877335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 165 - 265
Target Start/End: Original strand, 26638813 - 26638913
Alignment:
Q  165 gtgcacaaatgggaatccacgtgttgaaggagaaaaacagcatagaggaggatgtgatattcaccaatccttatatgaaaaagagaaagctagatgaata 264  Q
    |||||| ||||||||||||||| || |||||||||| || ||  |||||||||||||||||||||||||||||||  | |||||||||  ||||||||||    
T  26638813 gtgcaccaatgggaatccacgttttaaaggagaaaagcaacacggaggaggatgtgatattcaccaatccttataatagaaagagaaaattagatgaata 26638912  T
Q  265 t 265  Q
    |    
T  26638913 t 26638913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 165 - 265
Target Start/End: Original strand, 26744779 - 26744879
Alignment:
Q  165 gtgcacaaatgggaatccacgtgttgaaggagaaaaacagcatagaggaggatgtgatattcaccaatccttatatgaaaaagagaaagctagatgaata 264  Q
    |||||| ||||||||||||||| || |||||||||| || ||  |||||||||||||||||||||||||||||||  | |||||||||  ||||||||||    
T  26744779 gtgcaccaatgggaatccacgttttaaaggagaaaagcaacacggaggaggatgtgatattcaccaatccttataatagaaagagaaaattagatgaata 26744878  T
Q  265 t 265  Q
    |    
T  26744879 t 26744879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 147 - 238
Target Start/End: Original strand, 26626514 - 26626605
Alignment:
Q  147 agattagaacattaagtcgtgcacaaatgggaatccacgtgttgaaggagaaaaacagcatagaggaggatgtgatattcaccaatccttat 238  Q
    |||||| || ||||||  ||||||||||||||||||| |||||||||||||||| || || ||| |||||||| ||||||||||||||||||    
T  26626514 agattaaaatattaaggagtgcacaaatgggaatccatgtgttgaaggagaaaagcaacacagatgaggatgtcatattcaccaatccttat 26626605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 147 - 238
Target Start/End: Original strand, 26732491 - 26732582
Alignment:
Q  147 agattagaacattaagtcgtgcacaaatgggaatccacgtgttgaaggagaaaaacagcatagaggaggatgtgatattcaccaatccttat 238  Q
    |||||| || ||||||  ||||||||||||||||||| |||||||||||||||| || || ||| |||||||| ||||||||||||||||||    
T  26732491 agattaaaatattaaggagtgcacaaatgggaatccatgtgttgaaggagaaaagcaacacagatgaggatgtcatattcaccaatccttat 26732582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 171 - 252
Target Start/End: Original strand, 26827272 - 26827353
Alignment:
Q  171 aaatgggaatccacgtgttgaaggagaaaaacagcatagaggaggatgtgatattcaccaatccttatatgaaaaagagaaa 252  Q
    |||| ||||| |||||||||||||||||||  ||||| |||||||||||||||||||||||||||||||  | |||||||||    
T  26827272 aaattggaattcacgtgttgaaggagaaaaggagcatggaggaggatgtgatattcaccaatccttatagtagaaagagaaa 26827353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 168 - 239
Target Start/End: Original strand, 26888243 - 26888314
Alignment:
Q  168 cacaaatgggaatccacgtgttgaaggagaaaaacagcatagaggaggatgtgatattcaccaatccttata 239  Q
    |||||||||||||  | |||||||||||||||   | ||| |||||||||||||||||||||||||||||||    
T  26888243 cacaaatgggaattgaagtgttgaaggagaaaggaaacatggaggaggatgtgatattcaccaatccttata 26888314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 165 - 239
Target Start/End: Original strand, 31287987 - 31288064
Alignment:
Q  165 gtgcacaaatgggaatccacgtgttgaaggagaaaaacagcatagaggagg---atgtgatattcaccaatccttata 239  Q
    ||||||||||||||||||||||||| ||||||||||||| |  ||||||||   |||||||||||||| |||| ||||    
T  31287987 gtgcacaaatgggaatccacgtgttaaaggagaaaaacaacgcagaggaggagaatgtgatattcaccgatccatata 31288064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 165 - 265
Target Start/End: Original strand, 26805931 - 26806031
Alignment:
Q  165 gtgcacaaatgggaatccacgtgttgaaggagaaaaacagcatagaggaggatgtgatattcaccaatccttatatgaaaaagagaaagctagatgaata 264  Q
    |||| ||||| |||||||||||||| | |||||||| || ||  |||||| ||||| ||||||||||||||||||| | ||||| |||   |||||||||    
T  26805931 gtgctcaaatcggaatccacgtgttaatggagaaaagcaacacggaggagaatgtggtattcaccaatccttatattagaaagacaaaatcagatgaata 26806030  T
Q  265 t 265  Q
    |    
T  26806031 t 26806031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 165 - 239
Target Start/End: Original strand, 28789775 - 28789849
Alignment:
Q  165 gtgcacaaatgggaatccacgtgttgaaggagaaaaacagcatagaggaggatgtgatattcaccaatccttata 239  Q
    |||| ||||||||||||||||||   |||||||||| || |  ||||||| |||||||||||||| |||||||||    
T  28789775 gtgcgcaaatgggaatccacgtgagtaaggagaaaagcaacgcagaggagaatgtgatattcaccgatccttata 28789849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 165 - 235
Target Start/End: Original strand, 28795793 - 28795863
Alignment:
Q  165 gtgcacaaatgggaatccacgtgttgaaggagaaaaacagcatagaggaggatgtgatattcaccaatcct 235  Q
    |||| ||||||||||||||||||  ||||||||||| || |  ||||||| |||||||||||||| |||||    
T  28795793 gtgcgcaaatgggaatccacgtgaggaaggagaaaagcaacgcagaggagaatgtgatattcaccgatcct 28795863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 168 - 240
Target Start/End: Complemental strand, 27657494 - 27657419
Alignment:
Q  168 cacaaatgggaatccacgtgttgaaggagaaaaacagcat---agaggaggatgtgatattcaccaatccttatat 240  Q
    |||||||||||||||||||||||||| |||||| || |||    |||||||||||| |||||||  ||||||||||    
T  27657494 cacaaatgggaatccacgtgttgaagaagaaaagcaacatggatgaggaggatgtggtattcactgatccttatat 27657419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 165 - 199
Target Start/End: Original strand, 26888393 - 26888427
Alignment:
Q  165 gtgcacaaatgggaatccacgtgttgaaggagaaa 199  Q
    |||||||||| ||||||||||||||||||||||||    
T  26888393 gtgcacaaattggaatccacgtgttgaaggagaaa 26888427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 170 - 227
Target Start/End: Original strand, 26059309 - 26059366
Alignment:
Q  170 caaatgggaatccacgtgttgaaggagaaaaacagcatagaggaggatgtgatattca 227  Q
    ||||||||||||||||||| ||||||||||| || ||| |||| || ||||| |||||    
T  26059309 caaatgggaatccacgtgtggaaggagaaaagcaacatggaggggggtgtgagattca 26059366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 170 - 227
Target Start/End: Original strand, 26079279 - 26079336
Alignment:
Q  170 caaatgggaatccacgtgttgaaggagaaaaacagcatagaggaggatgtgatattca 227  Q
    ||||||||||||||||||| ||||||||||| || ||| |||| || ||||| |||||    
T  26079279 caaatgggaatccacgtgtggaaggagaaaagcaacatggaggggggtgtgagattca 26079336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 166 - 238
Target Start/End: Original strand, 25077396 - 25077468
Alignment:
Q  166 tgcacaaatgggaatccacgtgttgaaggagaaaaacagcatagaggaggatgtgatattcaccaatccttat 238  Q
    |||| ||| ||||||||| |||  ||||||||||| || ||  || ||||||||||||||||| |||||||||    
T  25077396 tgcaaaaaagggaatccatgtgcggaaggagaaaagcaacaaggatgaggatgtgatattcactaatccttat 25077468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 209 - 265
Target Start/End: Original strand, 26852014 - 26852070
Alignment:
Q  209 gaggaggatgtgatattcaccaatccttatatgaaaaagagaaagctagatgaatat 265  Q
    |||| ||||||| ||||||||||||||| ||  | ||||||||| ||||||||||||    
T  26852014 gagggggatgtggtattcaccaatccttctagtagaaagagaaaactagatgaatat 26852070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 165 - 213
Target Start/End: Complemental strand, 27601296 - 27601248
Alignment:
Q  165 gtgcacaaatgggaatccacgtgttgaaggagaaaaacagcatagagga 213  Q
    ||||||||||||||||||| ||| |||||||||||| || |||| ||||    
T  27601296 gtgcacaaatgggaatccatgtggtgaaggagaaaagcaacataaagga 27601248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 171 - 265
Target Start/End: Complemental strand, 18720885 - 18720791
Alignment:
Q  171 aaatgggaatccacgtgttgaaggagaaaaacagcatagaggaggatgtgatattcaccaatccttatatgaaaaagagaaagctagatgaatat 265  Q
    ||||||||||||||||||||||||||||||||| ||   | ||||||||||||||||||||||||||||  | |||||||||  |||||||||||    
T  18720885 aaatgggaatccacgtgttgaaggagaaaaacaacacgaatgaggatgtgatattcaccaatccttatagtagaaagagaaaattagatgaatat 18720791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 165 - 265
Target Start/End: Complemental strand, 18676361 - 18676261
Alignment:
Q  165 gtgcacaaatgggaatccacgtgttgaaggagaaaaacagcatagaggaggatgtgatattcaccaatccttatatgaaaaagagaaagctagatgaata 264  Q
    ||||| ||||||||||||||||||  ||||||||||||| ||   | ||||||||||||||||||||||||||||  | |||||||||  ||||||||||    
T  18676361 gtgcaaaaatgggaatccacgtgtgcaaggagaaaaacaacacgaatgaggatgtgatattcaccaatccttatagtagaaagagaaaaatagatgaata 18676262  T
Q  265 t 265  Q
    |    
T  18676261 t 18676261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 171 - 265
Target Start/End: Complemental strand, 18652297 - 18652203
Alignment:
Q  171 aaatgggaatccacgtgttgaaggagaaaaacagcatagaggaggatgtgatattcaccaatccttatatgaaaaagagaaagctagatgaatat 265  Q
    ||||||||||||||||||||||||||||||||| ||   | ||||||||||||||||  ||||||||||  | |||||||||  |||||||||||    
T  18652297 aaatgggaatccacgtgttgaaggagaaaaacaacacgaatgaggatgtgatattcattaatccttatagtagaaagagaaaattagatgaatat 18652203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 171 - 265
Target Start/End: Complemental strand, 18686395 - 18686301
Alignment:
Q  171 aaatgggaatccacgtgttgaaggagaaaaacagcatagaggaggatgtgatattcaccaatccttatatgaaaaagagaaagctagatgaatat 265  Q
    |||||||||||||||||| |||||||||||||| ||   | ||||||||||||||||||||| ||||||  | |||||||||  |||||||||||    
T  18686395 aaatgggaatccacgtgtggaaggagaaaaacaacacgaatgaggatgtgatattcaccaattcttatagtagaaagagaaaattagatgaatat 18686301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 171 - 265
Target Start/End: Complemental strand, 18696201 - 18696107
Alignment:
Q  171 aaatgggaatccacgtgttgaaggagaaaaacagcatagaggaggatgtgatattcaccaatccttatatgaaaaagagaaagctagatgaatat 265  Q
    |||||||||||||||||| |||||||||||  | |||| | ||||||||||||||||||||||||||||  | ||||||| |  |||||||||||    
T  18696201 aaatgggaatccacgtgtggaaggagaaaagtaacataaatgaggatgtgatattcaccaatccttatagtagaaagagagaattagatgaatat 18696107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 169 - 239
Target Start/End: Complemental strand, 18650638 - 18650567
Alignment:
Q  169 acaaatgggaatccacgt-gttgaaggagaaaaacagcatagaggaggatgtgatattcaccaatccttata 239  Q
    |||||| ||||||||| | ||| ||| |||||| |||||||||| |||||||||||||||||||||||||||    
T  18650638 acaaattggaatccactttgttcaagaagaaaagcagcatagagcaggatgtgatattcaccaatccttata 18650567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 171 - 265
Target Start/End: Complemental strand, 18728321 - 18728227
Alignment:
Q  171 aaatgggaatccacgtgttgaaggagaaaaacagcatagaggaggatgtgatattcaccaatccttatatgaaaaagagaaagctagatgaatat 265  Q
    |||||||||||||||||   ||||||||||||| ||   | ||||||||||||||||||||||||||||  | | |||||||  |||||||||||    
T  18728321 aaatgggaatccacgtgcgcaaggagaaaaacaacacgaatgaggatgtgatattcaccaatccttatagtagatagagaaaattagatgaatat 18728227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 171 - 239
Target Start/End: Complemental strand, 18718855 - 18718786
Alignment:
Q  171 aaatgggaatccac-gtgttgaaggagaaaaacagcatagaggaggatgtgatattcaccaatccttata 239  Q
    |||| ||||||||| ||||| ||| |||||| |||||||||| |||||||||||||| ||||||||||||    
T  18718855 aaattggaatccactgtgttcaagaagaaaagcagcatagagcaggatgtgatattctccaatccttata 18718786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 177 - 239
Target Start/End: Complemental strand, 18692366 - 18692303
Alignment:
Q  177 gaatccac-gtgttgaaggagaaaaacagcatagaggaggatgtgatattcaccaatccttata 239  Q
    |||||||| ||||| ||| ||||||| ||||| ||| ||||||||||||||| |||||||||||    
T  18692366 gaatccactgtgttcaagaagaaaaaaagcatggagcaggatgtgatattcatcaatccttata 18692303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 203 - 239
Target Start/End: Complemental strand, 18683025 - 18682989
Alignment:
Q  203 agcatagaggaggatgtgatattcaccaatccttata 239  Q
    ||||||||| ||||||||||||||| |||||||||||    
T  18683025 agcatagagcaggatgtgatattcatcaatccttata 18682989  T

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Target: scaffold0277 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 165 - 239
Target Start/End: Complemental strand, 10424 - 10350
Alignment:
Q  165 gtgcacaaatgggaatccacgtgttgaaggagaaaaacagcatagaggaggatgtgatattcaccaatccttata 239  Q
    |||| ||||||||||||||||||   |||||||||| || |  ||||||| |||||||||||||| |||||||||    
T  10424 gtgcgcaaatgggaatccacgtgagtaaggagaaaagcaacgcagaggagaatgtgatattcaccgatccttata 10350  T

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Target: scaffold0277; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 165 - 235
Target Start/End: Complemental strand, 1464 - 1394
Alignment:
Q  165 gtgcacaaatgggaatccacgtgttgaaggagaaaaacagcatagaggaggatgtgatattcaccaatcct 235  Q
    |||||||||||||||||||||||  || |||||||| || |  ||||||| | |||||||||||| |||||    
T  1464 gtgcacaaatgggaatccacgtgaggatggagaaaagcaacgcagaggagaacgtgatattcaccgatcct 1394  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 166 - 222
Target Start/End: Original strand, 29766647 - 29766703
Alignment:
Q  166 tgcacaaatgggaatccacgtgttgaaggagaaaaacagcatagaggaggatgtgat 222  Q
    |||||||||||||||||| |||||||||| || || ||| || ||||||||||||||    
T  29766647 tgcacaaatgggaatccatgtgttgaaggcgataagcagtatggaggaggatgtgat 29766703  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 165 - 240
Target Start/End: Complemental strand, 265088 - 265010
Alignment:
Q  165 gtgcacaaatgggaatccacgtgttgaaggagaaaaacagcatagaggagg---atgtgatattcaccaatccttatat 240  Q
    ||||||||||||||||||||| ||| | |||||||| || ||  |||||||   |||| ||||||||||||||||||||    
T  265088 gtgcacaaatgggaatccacgagttaatggagaaaagcaacagggaggaggataatgttatattcaccaatccttatat 265010  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 168 - 238
Target Start/End: Original strand, 26139436 - 26139506
Alignment:
Q  168 cacaaatgggaatccacgtgttgaaggagaaaaacagcatagaggaggatgtgatattcaccaatccttat 238  Q
    ||||||| ||||||||  |||| ||||||||||  ||||| |||||||||||  ||||||| |||||||||    
T  26139436 cacaaattggaatccatatgttcaaggagaaaagaagcatggaggaggatgtcgtattcactaatccttat 26139506  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 168 - 222
Target Start/End: Original strand, 10675106 - 10675160
Alignment:
Q  168 cacaaatgggaatccacgtgttgaaggagaaaaacagcatagaggaggatgtgat 222  Q
    |||||||||||||||| |||||||||| |||||||   || ||||||||||||||    
T  10675106 cacaaatgggaatccatgtgttgaaggcgaaaaacgatatggaggaggatgtgat 10675160  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 165 - 223
Target Start/End: Original strand, 18514576 - 18514634
Alignment:
Q  165 gtgcacaaatgggaatccacgtgttgaaggagaaaaacagcatagaggaggatgtgata 223  Q
    ||||||||||| ||||| | |||||||||| ||||| ||| || |||||||||||||||    
T  18514576 gtgcacaaatgagaatctatgtgttgaaggcgaaaagcagtatggaggaggatgtgata 18514634  T

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