View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14484_low_13 (Length: 545)
Name: NF14484_low_13
Description: NF14484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14484_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 473; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 18 - 533
Target Start/End: Original strand, 7761191 - 7761706
Alignment:
| Q |
18 |
gaagcattattccttcaactgtggtacttccctatacataatacatgaaaaatgtagatagtttgagactaaaatatatttgccaaagttnnnnnnnnng |
117 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7761191 |
gaagcattattccttcaactgtggtacttccctatacataatacatgaaaaatgtagatagtttgagactaaaatatatttgccaaagttaaaaaaaaga |
7761290 |
T |
|
| Q |
118 |
aaggtatattaacaaagtaaaaatgatataattctcactaagtttcctttcagtacaccgagaacatcgtgatgagaccataatctgctgcgttcaccag |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7761291 |
aaggtatattaacaaagtaaaaatgatataattctcactaagtttcctttcagtacaccgagaacatcgtgatgagaccataatctgctgcgttcaccag |
7761390 |
T |
|
| Q |
218 |
ggtttgatgtcgactccttccgaacaatctctctacccatgtcttgtattaaatcatgcatttctatacaaccattttcatcaacagttaggagacattt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
7761391 |
ggtttgatgtcgactccttccgaacaatctctctacccatgtcttgtattaaatcatgcatttctatacaaccattttcatcaacagttaagagacattt |
7761490 |
T |
|
| Q |
318 |
actaacaaatactcgtataactgggaaaaaatcacaagcttcttgtatccttttaacataatcccatctttcccctttgaaaaaacaagcaatgtccaga |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7761491 |
actaacaaatactcgtataactgggaaaaaatcacaagcttcttgtatccttttaacataatcccatctttcccctttgaaaaaacaagcaatgtccaga |
7761590 |
T |
|
| Q |
418 |
aaagctttttgttccaagtcagataggccattgtagctgatttccaatacaccctgaatctcagcatctggaacctttctatatctctgcaattcaatat |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7761591 |
aaagctttttgttccaagtcagataggccattgtagctgatttccaatacaccctgaatctcagcatctggaacctttctatatctctgcaattcaatat |
7761690 |
T |
|
| Q |
518 |
ccgattcccctatgct |
533 |
Q |
| |
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|| ||||| ||||||| |
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|
| T |
7761691 |
cccattcctctatgct |
7761706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 148 - 517
Target Start/End: Original strand, 7837738 - 7838107
Alignment:
| Q |
148 |
attctcactaagtttcctttcagtacaccgagaacatcgtgatgagaccataatctgctgcgttcaccagggtttgatgtcgactccttccgaacaatct |
247 |
Q |
| |
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||||| || |||||||||||||| ||| | ||| |||| | |||||||||||| ||||||||||||||||||||||| ||||| || ||||||| ||||| |
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| T |
7837738 |
attcttaccaagtttcctttcagcacatcaagagcatctttatgagaccataacctgctgcgttcaccagggtttgaagtcgattctttccgaataatct |
7837837 |
T |
|
| Q |
248 |
ctctacccatgtcttgtattaaatcatgcatttctatacaaccattttcatcaacagttaggagacatttactaacaaatactcgtataactgggaaaaa |
347 |
Q |
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||||||||||||||||||||| ||||||||| |||| ||||||||||||||||||| ||| |||||||| |||||||| ||||||||||||||| | || |
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|
| T |
7837838 |
ctctacccatgtcttgtattagatcatgcatctctaaacaaccattttcatcaacaattaacagacatttgctaacaaagactcgtataactgggtagaa |
7837937 |
T |
|
| Q |
348 |
atcacaagcttcttgtatccttttaacataatcccatctttcccctttgaaaaaacaagcaatgtccagaaaagctttttgttccaagtcagataggcca |
447 |
Q |
| |
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| ||||||| || |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| || ||||||||||||||||| |
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| T |
7837938 |
accacaagcatcgagtatccttttaacataatcccatctttcgcctttgaaaaaacaagcaatgtccagaaaaactttctggtccaagtcagataggcct |
7838037 |
T |
|
| Q |
448 |
ttgtagctgatttccaatacaccctgaatctcagcatctggaacctttctatatctctgcaattcaatat |
517 |
Q |
| |
|
|||||||||||||||| ||||| |||||||||||||||||||||||||||||| |||||| |||||||| |
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|
| T |
7838038 |
ttgtagctgatttccagtacactttgaatctcagcatctggaacctttctatatttctgcagttcaatat |
7838107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 118 - 524
Target Start/End: Original strand, 7754192 - 7754598
Alignment:
| Q |
118 |
aaggtatattaacaaagtaaaaatgatataattctcactaagtttcctttcagtacaccgagaacatcgtgatgagaccataatctgctgcgttcaccag |
217 |
Q |
| |
|
||||| |||||| |||||||| ||||||||||||| || || ||||||||||||||| | |||||||| | ||||||||| |||||||| |||||||||| |
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|
| T |
7754192 |
aaggtctattaagaaagtaaagatgatataattcttaccaaatttcctttcagtacatcaagaacatctttatgagaccacaatctgctacgttcaccag |
7754291 |
T |
|
| Q |
218 |
ggtttgatgtcgactccttccgaacaatctctctacccatgtcttgtattaaatcatgcatttctatacaaccattttcatcaacagttaggagacattt |
317 |
Q |
| |
|
|||||||||| || || ||||| |||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||| ||||||||| |
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|
| T |
7754292 |
ggtttgatgttgattctttccgtacaatctctctacccatgtcttgtattagatcatgcatttgtagcaaaccattttcatcaacagttatgagacattt |
7754391 |
T |
|
| Q |
318 |
actaacaaatactcgtataactgggaaaaaatcacaagcttcttgtatccttttaacataatcccatctttcccctttgaaaaaacaagcaatgtccaga |
417 |
Q |
| |
|
|||| ||| |||||||||||||| | ||||||||||| ||| ||||||||||| ||||||||||||||||||||||||| ||||| || ||||| ||| |
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|
| T |
7754392 |
actattaaacgctcgtataactgggtagaaatcacaagcgtctagtatccttttagcataatcccatctttcccctttgaagaaacacgcgatgtctaga |
7754491 |
T |
|
| Q |
418 |
aaagctttttgttccaagtcagataggccattgtagctgatttccaatacaccctgaatctcagcatctggaacctttctatatctctgcaattcaatat |
517 |
Q |
| |
|
||| ||| || ||||||||||||||||| |||||||||||||||| |||||| ||||||||||||||||| |||||||||||| |||| | |||||||| |
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|
| T |
7754492 |
aaaattttctggtccaagtcagataggcctttgtagctgatttccattacaccttgaatctcagcatctgggacctttctatatttctgaagttcaatat |
7754591 |
T |
|
| Q |
518 |
ccgattc |
524 |
Q |
| |
|
|| |||| |
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|
| T |
7754592 |
cccattc |
7754598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 18 - 107
Target Start/End: Original strand, 7837620 - 7837706
Alignment:
| Q |
18 |
gaagcattattccttcaactgtggtacttccctatacataatacatgaaaaatgtagatagtttgagactaaaatatatttgccaaagtt |
107 |
Q |
| |
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|||||||||| |||||||||| |||||||||||| | ||||||||||||||| ||| | |||||||||||| ||||||||||||||| |
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|
| T |
7837620 |
gaagcattatgccttcaactgcagtacttccctattga-aatacatgaaaaatggagaga-attgagactaaaa-atatttgccaaagtt |
7837706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 189 - 301
Target Start/End: Complemental strand, 7828590 - 7828478
Alignment:
| Q |
189 |
atgagaccataatctgctgcgttcaccagggtttgatgtcgactccttccgaacaatctctctacccatgtcttgtattaaatcatgcatttctatacaa |
288 |
Q |
| |
|
|||| ||||||| |||||||| | ||||||| || || ||| | ||| | ||||| |||||||||||| |||||||||| ||||||||| || | || |
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| T |
7828590 |
atgataccataacctgctgcggttaccagggattaatagcgatttctttctaacaacctctctacccatatcttgtattagatcatgcatctccaagcag |
7828491 |
T |
|
| Q |
289 |
ccattttcatcaa |
301 |
Q |
| |
|
||||||||||||| |
|
|
| T |
7828490 |
ccattttcatcaa |
7828478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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