View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14484_low_14 (Length: 541)
Name: NF14484_low_14
Description: NF14484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14484_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 404; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 12 - 500
Target Start/End: Complemental strand, 28431218 - 28430726
Alignment:
| Q |
12 |
caaaggtaacaaaggatggacggcggaaactgtgtcaacgataccatccaaggtgcccgttgcagcctaaatagaaagaaggagacattataaatgtgtt |
111 |
Q |
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|||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
28431218 |
caaaggtaacaaaggatggacggcagaaactgtgtcaatgataccatccaaggtgcccgttgcagcctaaataaaaagaaggagacattataaatgtgtt |
28431119 |
T |
|
| Q |
112 |
tggtttcaagctaataaa--taaatgtattgtcaccttcatgtaannnnnnnnn--atttcgttagtttttagagggatctagtaatcatgtaacaaccg |
207 |
Q |
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|||||||||||||||||| ||||||||| ||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
28431118 |
tggtttcaagctaataaaaataaatgtatggtcaccttcatgtaaattttttatttatttcgttagtctttagagggatctagtaatcatgtaacaaccg |
28431019 |
T |
|
| Q |
208 |
aactcgggtgattggaattaattctatcttaattgaacttgagttcaaatttcggtcgattatgaaggtccgtttctatgagaataggataattaagcct |
307 |
Q |
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|||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
28431018 |
aactcgagtgattggagttaattctatcttaattgaacttgagttcaaatttcggtcgattatcaaggtccgtttctatgagaataggataattaagcct |
28430919 |
T |
|
| Q |
308 |
aaaaagaattcaaaaattgatcataattactctaatatagtagatacatacctgcatttgatcttgttcactgctaacaacaaatgagtcagctccaaga |
407 |
Q |
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| T |
28430918 |
aaaaagaattgaaaaattgatcataattactctaatatagtagatacatacctgcatttgatcttgttcactgctaaccacaaatgagtcagctccaaga |
28430819 |
T |
|
| Q |
408 |
agttcaatagcttccttctttttgttaggagaagtgctaatcactgttaccttagcaccaaaagctttggcaaatttcacagccatatgacca |
500 |
Q |
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| T |
28430818 |
agttcaatagcttccttctttttgttaggagaagtgctaatcactgttaccttagcaccaaaagctttggcaaatttcacagccatatgacca |
28430726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 91; Significance: 8e-44; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 357 - 499
Target Start/End: Original strand, 13373003 - 13373145
Alignment:
| Q |
357 |
acctgcatttgatcttgttcactgctaacaacaaatgagtcagctccaagaagttcaatagcttccttctttttgttaggagaagtgctaatcactgtta |
456 |
Q |
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||||||||||| |||||||| |||||| ||||||||||||||||| | ||||||| ||||||||||||||||||||||||||||| |||||||||| |
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| T |
13373003 |
acctgcatttggtcttgttcgtggctaaccacaaatgagtcagctcctaagtgttcaatggcttccttctttttgttaggagaagtgcttatcactgtta |
13373102 |
T |
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| Q |
457 |
ccttagcaccaaaagctttggcaaatttcacagccatatgacc |
499 |
Q |
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| T |
13373103 |
cattagcaccaaaagctttggtaaatttcacagccatatgacc |
13373145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 381 - 499
Target Start/End: Original strand, 13378823 - 13378941
Alignment:
| Q |
381 |
ctaacaacaaatgagtcagctccaagaagttcaatagcttccttctttttgttaggagaagtgctaatcactgttaccttagcaccaaaagctttggcaa |
480 |
Q |
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||||| || |||||||||||||| | ||||||| |||||||||||||||||||||||||| || | ||| ||||||||| ||||||| |||||||| | |
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| T |
13378823 |
ctaaccacgaatgagtcagctcctaagcgttcaatggcttccttctttttgttaggagaagtacttaccacagttaccttaacaccaaaggctttggcga |
13378922 |
T |
|
| Q |
481 |
atttcacagccatatgacc |
499 |
Q |
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| T |
13378923 |
acttcacagccatatgacc |
13378941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 355 - 500
Target Start/End: Original strand, 13426150 - 13426295
Alignment:
| Q |
355 |
atacctgcatttgatcttgttcactgctaacaacaaatgagtcagctccaagaagttcaatagcttccttctttttgttaggagaagtgctaatcactgt |
454 |
Q |
| |
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|||||||||| |||||| | || | ||| || | ||| ||||||||||| | | |||| || |||||||| | |||| |||| || || ||||| ||||| |
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| T |
13426150 |
atacctgcatctgatctggatcgcggcttactagaaacgagtcagctcctaaatgttctatcgcttccttttctttgctaggcgatgtactaattactgt |
13426249 |
T |
|
| Q |
455 |
taccttagcaccaaaagctttggcaaatttcacagccatatgacca |
500 |
Q |
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||| |||||||||||||||||||| ||||||||||||||||||||| |
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| T |
13426250 |
tacattagcaccaaaagctttggcgaatttcacagccatatgacca |
13426295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 417 - 500
Target Start/End: Complemental strand, 13385605 - 13385522
Alignment:
| Q |
417 |
gcttccttctttttgttaggagaagtgctaatcactgttaccttagcaccaaaagctttggcaaatttcacagccatatgacca |
500 |
Q |
| |
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|||||||| | |||| ||| ||| || ||||| || || || ||||||||||||||||||||||||||||||||||| |||||| |
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| T |
13385605 |
gcttccttttctttgctagcagatgtactaattacggtcacattagcaccaaaagctttggcaaatttcacagccatgtgacca |
13385522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 417 - 500
Target Start/End: Complemental strand, 13389426 - 13389343
Alignment:
| Q |
417 |
gcttccttctttttgttaggagaagtgctaatcactgttaccttagcaccaaaagctttggcaaatttcacagccatatgacca |
500 |
Q |
| |
|
||||| |||| |||||| || || || |||||||||||||| | |||||||| ||||||||||||||||||||||| |||||| |
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| T |
13389426 |
gcttctttctctttgttgggtgatgtactaatcactgttacaatcgcaccaaatgctttggcaaatttcacagccatgtgacca |
13389343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 417 - 496
Target Start/End: Original strand, 13412976 - 13413055
Alignment:
| Q |
417 |
gcttccttctttttgttaggagaagtgctaatcactgttaccttagcaccaaaagctttggcaaatttcacagccatatg |
496 |
Q |
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| T |
13412976 |
gcttccttttctttgttaggcgatgtactaattacggtaacattagcaccgaaagctttggcaaatttcacagccatatg |
13413055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 459 - 500
Target Start/End: Original strand, 13446914 - 13446955
Alignment:
| Q |
459 |
ttagcaccaaaagctttggcaaatttcacagccatatgacca |
500 |
Q |
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||||||||||||||||| |||||||||||||||||||||||| |
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| T |
13446914 |
ttagcaccaaaagctttagcaaatttcacagccatatgacca |
13446955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 393 - 496
Target Start/End: Original strand, 13419297 - 13419400
Alignment:
| Q |
393 |
gagtcagctccaagaagttcaatagcttccttctttttgttaggagaagtgctaatcactgttaccttagcaccaaaagctttggcaaatttcacagcca |
492 |
Q |
| |
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||||||||||| | |||| || |||||||| | ||||| ||| || || ||||| || || || |||||||| |||||||| |||||||||||||||| |
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| T |
13419297 |
gagtcagctcccaagtgttctattgcttccttttctttgtgaggcgatgtactaattacggtcacattagcaccgaaagcttttgcaaatttcacagcca |
13419396 |
T |
|
| Q |
493 |
tatg |
496 |
Q |
| |
|
|||| |
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| T |
13419397 |
tatg |
13419400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 356 - 488
Target Start/End: Complemental strand, 13393894 - 13393762
Alignment:
| Q |
356 |
tacctgcatttgatcttgttcactgctaacaacaaatgagtcagctccaagaagttcaatagcttccttctttttgttaggagaagtgctaatcactgtt |
455 |
Q |
| |
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||||||||||| |||||| ||| || | || |||||| |||||||| || ||| || ||||| |||| |||||| || || || ||||| |||||| |
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| T |
13393894 |
tacctgcattttatcttggtcatgacttataagaaatgaatcagctcctaggttttctattgcttctttctctttgttgggtgatgtactaattactgtt |
13393795 |
T |
|
| Q |
456 |
accttagcaccaaaagctttggcaaatttcaca |
488 |
Q |
| |
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|| ||||| ||||||||||| ||||| |||||| |
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| T |
13393794 |
acattagctccaaaagcttttgcaaacttcaca |
13393762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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