View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14484_low_17 (Length: 512)

Name: NF14484_low_17
Description: NF14484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14484_low_17
NF14484_low_17
[»] chr5 (16 HSPs)
chr5 (12-495)||(33763318-33763801)
chr5 (256-480)||(33734503-33734731)
chr5 (295-453)||(33904589-33904747)
chr5 (253-451)||(33749004-33749206)
chr5 (301-442)||(33867039-33867180)
chr5 (300-451)||(33821799-33821950)
chr5 (12-125)||(33867285-33867399)
chr5 (12-107)||(33904848-33904943)
chr5 (12-92)||(33698933-33699013)
chr5 (307-446)||(33698697-33698836)
chr5 (12-107)||(33736436-33736531)
chr5 (12-92)||(33823157-33823237)
chr5 (19-128)||(33750156-33750264)
chr5 (306-360)||(33680187-33680241)
chr5 (12-106)||(33680385-33680479)
chr5 (368-424)||(33846626-33846682)
[»] scaffold0001 (2 HSPs)
scaffold0001 (295-443)||(149000-149148)
scaffold0001 (12-106)||(149251-149345)
[»] chr7 (2 HSPs)
chr7 (293-466)||(5470116-5470288)
chr7 (12-105)||(5468536-5468629)
[»] chr8 (2 HSPs)
chr8 (307-443)||(21306041-21306177)
chr8 (29-99)||(21306322-21306392)
[»] scaffold0247 (2 HSPs)
scaffold0247 (301-453)||(21868-22020)
scaffold0247 (12-128)||(19857-19972)
[»] scaffold0193 (2 HSPs)
scaffold0193 (307-459)||(24289-24441)
scaffold0193 (12-128)||(23305-23420)
[»] scaffold0023 (2 HSPs)
scaffold0023 (307-427)||(90071-90191)
scaffold0023 (12-129)||(88896-89013)


Alignment Details
Target: chr5 (Bit Score: 436; Significance: 0; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 12 - 495
Target Start/End: Complemental strand, 33763801 - 33763318
Alignment:
Q  12 aggtgcctggacatatgaggaagataagctactcaaggcttgcattaacaagtatggtgaaggaaaatggcatttagttccacagagagcaggtattaac 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  33763801 aggtgcctggacatatgaggaagataagctactcaaggcttgcattaacaagtatggtgaaggaaaatggcattttgttccacagagagcaggtattaac 33763702  T
Q  112 gaatgttgcttattctatatattgtgtatgtggcttataattagttaagctgaacaactatataaggtctgaactaggttcataaagagtgacatctaaa 211  Q
    ||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||    
T  33763701 gaatgttgcttattctatatattgtgtatttggcttataatcagttaagcggaacaactatataaggtctgaactaggtttataaagagtgacatttaaa 33763602  T
Q  212 agtgcactactatattctattgaagtaatcataaattaatcatatgcataatttcatttctacatatatattgtaaaagtatttgttacacttggcagga 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||    
T  33763601 agtgcactactatattctattgaagtaatcataaattaatcatatgcataatttcatttctacatgtatattgttaaagtatttgttacacttggcagga 33763502  T
Q  312 ttgaatagatgccgaaaaagttgtagattgaggtggttaaattatttaagccccaacatcaaaagggaaagctttgctgaggatgaagttgatctgatcc 411  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33763501 ttgagtagatgccgaaaaagttgtagattgaggtggttaaattatttaagccccaacatcaaaagggaaagctttgctgaggatgaagttgatctgatcc 33763402  T
Q  412 taaggttacacaaacttctagggaataggtaagcttccaaggcaaaattcaaatttgtttgtgtatgcttcttatatttatgca 495  Q
    |||||||||| ||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  33763401 taaggttacaaaaacttctaggtaataggtaagcttccatggcaaaattcaaatttgtttgtgtatgcttcttatatttatgca 33763318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 256 - 480
Target Start/End: Complemental strand, 33734731 - 33734503
Alignment:
Q  256 tgcataatttcatttctacat--atatattgtaaaagtat--ttgttacacttggcaggattgaatagatgccgaaaaagttgtagattgaggtggttaa 351  Q
    |||||||||||||||| ||||  ||||||||| ||| |||  ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||    
T  33734731 tgcataatttcatttccacatgtatatattgtgaaactatatttgttacacttggcaggattgaatagatgtcgaaaaagttgtagattgaggtgggtaa 33734632  T
Q  352 attatttaagccccaacatcaaaagggaaagctttgctgaggatgaagttgatctgatcctaaggttacacaaacttctagggaataggtaagcttccaa 451  Q
    |||||||| |||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |    
T  33734631 attatttatgccctaacatcaaaagggaaagctttgctgaggatgaagttgatatgatcctaaggttacacaaacttctagggaataggtaagcttccga 33734532  T
Q  452 ggcaaaattcaaatttgtttgtgtatgct 480  Q
    | |||||||||||||||||||||||||||    
T  33734531 gccaaaattcaaatttgtttgtgtatgct 33734503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 295 - 453
Target Start/End: Complemental strand, 33904747 - 33904589
Alignment:
Q  295 tgttacacttggcaggattgaatagatgccgaaaaagttgtagattgaggtggttaaattatttaagccccaacatcaaaagggaaagctttgctgagga 394  Q
    |||||||| || ||||||||||||| ||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  33904747 tgttacacatgacaggattgaataggtgccgaaaaagctgtagattgaggtggttaaattatttaacccccaacatcaaaagggaaagctttgctgagga 33904648  T
Q  395 tgaagttgatctgatcctaaggttacacaaacttctagggaataggtaagcttccaagg 453  Q
    |||||||||| |||| ||||||||||||||||||||||||||||||||| |||||||||    
T  33904647 tgaagttgatatgatgctaaggttacacaaacttctagggaataggtaatcttccaagg 33904589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 253 - 451
Target Start/End: Complemental strand, 33749206 - 33749004
Alignment:
Q  253 atatgcataatttcatttctacatatatattgtaaaagtatttgttacac----ttggcaggattgaatagatgccgaaaaagttgtagattgaggtggt 348  Q
    ||||||||||||| ||||||||||||||||| | ||| ||||||  | ||    ||||||||| ||||||| ||| ||||||||||||||||||| ||||    
T  33749206 atatgcataatttaatttctacatatatattatcaaaatatttggcaaacatacttggcaggactgaataggtgcagaaaaagttgtagattgagatggt 33749107  T
Q  349 taaattatttaagccccaacatcaaaagggaaagctttgctgaggatgaagttgatctgatcctaaggttacacaaacttctagggaataggtaagcttc 448  Q
    |||||||||||| ||| | |||||| || |||| |||| |||||||||||| |||| ||||||| ||||||||||| ||  | |||||||||||||||||    
T  33749106 taaattatttaaacccaaccatcaacagagaaatcttttctgaggatgaagctgatatgatccttaggttacacaacctcttggggaataggtaagcttc 33749007  T
Q  449 caa 451  Q
    |||    
T  33749006 caa 33749004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 301 - 442
Target Start/End: Complemental strand, 33867180 - 33867039
Alignment:
Q  301 acttggcaggattgaatagatgccgaaaaagttgtagattgaggtggttaaattatttaagccccaacatcaaaagggaaagctttgctgaggatgaagt 400  Q
    ||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| ||||| |||||| || || || ||| |||||||||||||    
T  33867180 acttggcaggattgaataggtgccggaaaagttgtagattgaggtggttaaattatttaaaccccaccatcaatagagagagtttttctgaggatgaagt 33867081  T
Q  401 tgatctgatcctaaggttacacaaacttctagggaataggta 442  Q
    |||| ||||  ||||||||||||| ||| ||||||| |||||    
T  33867080 tgatatgattttaaggttacacaagcttttagggaacaggta 33867039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 300 - 451
Target Start/End: Complemental strand, 33821950 - 33821799
Alignment:
Q  300 cacttggcaggattgaatagatgccgaaaaagttgtagattgaggtggttaaattatttaagccccaacatcaaaagggaaagctttgctgaggatgaag 399  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||| ||| || || || || |||||| || | || |||||||    
T  33821950 cacttggcaggattgaatagatgtcgaaaaagttgtagattgaggtgggtaaattatttaaaccctaatattaacagagaaagcattaccgaagatgaag 33821851  T
Q  400 ttgatctgatcctaaggttacacaaacttctagggaataggtaagcttccaa 451  Q
     |||| ||||| ||||||||||||| || || ||||||||||||||||||||    
T  33821850 ctgatatgatcataaggttacacaatctcctggggaataggtaagcttccaa 33821799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 12 - 125
Target Start/End: Complemental strand, 33867399 - 33867285
Alignment:
Q  12 aggtgcctggacatatgaggaagataagctactcaaggcttgcattaacaagtatggtgaaggaaaatggcatttagttccacagagagcaggtat-taa 110  Q
    |||||| ||||||||||||||||| ||||||||||||||||| ||  | ||||||||||||||||||||||||||||||||||| ||||||||||| |||    
T  33867399 aggtgcatggacatatgaggaagacaagctactcaaggcttgtatgcagaagtatggtgaaggaaaatggcatttagttccacaaagagcaggtatataa 33867300  T
Q  111 cgaatgttgcttatt 125  Q
     ||| ||||||||||    
T  33867299 tgaaagttgcttatt 33867285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 12 - 107
Target Start/End: Complemental strand, 33904943 - 33904848
Alignment:
Q  12 aggtgcctggacatatgaggaagataagctactcaaggcttgcattaacaagtatggtgaaggaaaatggcatttagttccacagagagcaggtat 107  Q
    |||||| ||||||||||||||||| ||||||||||||||||| ||  | ||||||||||||||||||||||||||||||||||| |||||||||||    
T  33904943 aggtgcatggacatatgaggaagacaagctactcaaggcttgtatacagaagtatggtgaaggaaaatggcatttagttccacaaagagcaggtat 33904848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 12 - 92
Target Start/End: Complemental strand, 33699013 - 33698933
Alignment:
Q  12 aggtgcctggacatatgaggaagataagctactcaaggcttgcattaacaagtatggtgaaggaaaatggcatttagttcc 92  Q
    |||||| |||||||||||||||||||| |||||||||||||||||  ||||||||||||||||||||||||||||||||||    
T  33699013 aggtgcatggacatatgaggaagataatctactcaaggcttgcatccacaagtatggtgaaggaaaatggcatttagttcc 33698933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 307 - 446
Target Start/End: Complemental strand, 33698836 - 33698697
Alignment:
Q  307 caggattgaatagatgccgaaaaagttgtagattgaggtggttaaattatttaagccccaacatcaaaagggaaagctttgctgaggatgaagttgatct 406  Q
    |||| |||||||| || || ||||||||||||||||||||||| |||||||||| ||||   ||||| || ||||| || || ||||||||| ||||| |    
T  33698836 caggtttgaataggtgtcggaaaagttgtagattgaggtggttgaattatttaaaccccgcaatcaacagagaaagtttcgccgaggatgaaattgatat 33698737  T
Q  407 gatcctaaggttacacaaacttctagggaataggtaagct 446  Q
    ||| |||||||||||||||||||||||||| | |||||||    
T  33698736 gattctaaggttacacaaacttctagggaacaagtaagct 33698697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 12 - 107
Target Start/End: Complemental strand, 33736531 - 33736436
Alignment:
Q  12 aggtgcctggacatatgaggaagataagctactcaaggcttgcattaacaagtatggtgaaggaaaatggcatttagttccacagagagcaggtat 107  Q
    |||||| ||||||||||||||||| ||||||||||||||||| ||  | |||||||||||||||||||||||||||||| | || |||||||||||    
T  33736531 aggtgcatggacatatgaggaagacaagctactcaaggcttgtatacagaagtatggtgaaggaaaatggcatttagtttctcaaagagcaggtat 33736436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 12 - 92
Target Start/End: Complemental strand, 33823237 - 33823157
Alignment:
Q  12 aggtgcctggacatatgaggaagataagctactcaaggcttgcattaacaagtatggtgaaggaaaatggcatttagttcc 92  Q
    |||||| ||||||||||||||||| ||  |||||||||||| |||| ||||||||||||||||||||||||||||| ||||    
T  33823237 aggtgcatggacatatgaggaagacaacttactcaaggcttacattcacaagtatggtgaaggaaaatggcatttaattcc 33823157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 19 - 128
Target Start/End: Complemental strand, 33750264 - 33750156
Alignment:
Q  19 tggacatatgaggaagataagctactcaaggcttgcattaacaagtatggtgaaggaaaatggcatttagttccacagagagcaggtattaacgaatgtt 118  Q
    ||||||| ||||||||| ||| ||||||| ||||  ||||||||||||||||||||||||||||||||| ||||  | |||||||||| ||  |||||||    
T  33750264 tggacatctgaggaagacaagttactcaaagcttatattaacaagtatggtgaaggaaaatggcatttaattcctaaaagagcaggta-tagtgaatgtt 33750166  T
Q  119 gcttattcta 128  Q
    |||| |||||    
T  33750165 gctttttcta 33750156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 306 - 360
Target Start/End: Complemental strand, 33680241 - 33680187
Alignment:
Q  306 gcaggattgaatagatgccgaaaaagttgtagattgaggtggttaaattatttaa 360  Q
    ||||| |||||||||||||| ||||||||||||||||||||| | ||||||||||    
T  33680241 gcaggtttgaatagatgccggaaaagttgtagattgaggtgggtgaattatttaa 33680187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 12 - 106
Target Start/End: Complemental strand, 33680479 - 33680385
Alignment:
Q  12 aggtgcctggacatatgaggaagataagctactcaaggcttgcattaacaagtatggtgaaggaaaatggcatttagttccacagagagcaggta 106  Q
    |||||| |||||||||||||| || || ||||||||||  || ||| | || ||||||||||| |||||||||||||||||  | ||||||||||    
T  33680479 aggtgcatggacatatgaggaggacaatctactcaaggactgtattcaaaaatatggtgaagggaaatggcatttagttcctaaaagagcaggta 33680385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 368 - 424
Target Start/End: Complemental strand, 33846682 - 33846626
Alignment:
Q  368 catcaaaagggaaagctttgctgaggatgaagttgatctgatcctaaggttacacaa 424  Q
    |||||| || |||| |||| |||||||||||| |||| ||||||| |||||||||||    
T  33846682 catcaacagagaaatcttttctgaggatgaagctgatatgatccttaggttacacaa 33846626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 117; Significance: 2e-59; HSPs: 2)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 295 - 443
Target Start/End: Complemental strand, 149148 - 149000
Alignment:
Q  295 tgttacacttggcaggattgaatagatgccgaaaaagttgtagattgaggtggttaaattatttaagccccaacatcaaaagggaaagctttgctgagga 394  Q
    |||||||| || ||| ||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  149148 tgttacacatgacagaattgaataggtgccgcaaaagctgtagattgaggtggttaaattatttaagccccaacatcaaaagggaaagctttgctgagga 149049  T
Q  395 tgaagttgatctgatcctaaggttacacaaacttctagggaataggtaa 443  Q
    |||||| ||| ||||||||||||||||||||||||||||||||||||||    
T  149048 tgaagtcgatatgatcctaaggttacacaaacttctagggaataggtaa 149000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 12 - 106
Target Start/End: Complemental strand, 149345 - 149251
Alignment:
Q  12 aggtgcctggacatatgaggaagataagctactcaaggcttgcattaacaagtatggtgaaggaaaatggcatttagttccacagagagcaggta 106  Q
    ||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| || ||||||||||    
T  149345 aggtgcctggacatacgaggaagataagctactcaaggcttgcattgacaagtatggggaaggaaaatggcatttagttcctcaaagagcaggta 149251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 102; Significance: 2e-50; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 293 - 466
Target Start/End: Original strand, 5470116 - 5470288
Alignment:
Q  293 tttgttacacttggcaggattgaatagatgccgaaaaagttgtagattgaggtggttaaattatttaagccccaacatcaaaagggaaagctttgctgag 392  Q
    ||||||||||||  |||||||||||||||| |||||||||||||||||||||||| ||||||||||||  ||||||||||| ||  |||||||| |||||    
T  5470116 tttgttacactta-caggattgaatagatgtcgaaaaagttgtagattgaggtggataaattatttaaagcccaacatcaatagaaaaagcttttctgag 5470214  T
Q  393 gatgaagttgatctgatcctaaggttacacaaacttctagggaataggtaagcttccaaggcaaaattcaaatt 466  Q
    |||||||||||| ||||||||||||||||||||||  |||| ||||||||||||||| |||| ||||| |||||    
T  5470215 gatgaagttgatatgatcctaaggttacacaaactcttaggaaataggtaagcttccgaggccaaattaaaatt 5470288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 12 - 105
Target Start/End: Original strand, 5468536 - 5468629
Alignment:
Q  12 aggtgcctggacatatgaggaagataagctactcaaggcttgcattaacaagtatggtgaaggaaaatggcatttagttccacagagagcaggt 105  Q
    |||||| |||||||| |||||||| ||  |||||||||||| |||||||||||||||||||||||||||||||||| |||| || |||||||||    
T  5468536 aggtgcatggacatacgaggaagacaacttactcaaggcttacattaacaagtatggtgaaggaaaatggcatttaattcctcaaagagcaggt 5468629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 89; Significance: 1e-42; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 307 - 443
Target Start/End: Complemental strand, 21306177 - 21306041
Alignment:
Q  307 caggattgaatagatgccgaaaaagttgtagattgaggtggttaaattatttaagccccaacatcaaaagggaaagctttgctgaggatgaagttgatct 406  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| || | ||| ||| ||||||||||||  ||| |    
T  21306177 caggattgaatagatgcagaaaaagttgtagattgaggtggttaaattacttaagccccaacatcaacagaggaagattttctgaggatgaagaagattt 21306078  T
Q  407 gatcctaaggttacacaaacttctagggaataggtaa 443  Q
    ||||||||||||||||||||| ||||| |||||||||    
T  21306077 gatcctaaggttacacaaactactaggaaataggtaa 21306041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 29 - 99
Target Start/End: Complemental strand, 21306392 - 21306322
Alignment:
Q  29 aggaagataagctactcaaggcttgcattaacaagtatggtgaaggaaaatggcatttagttccacagaga 99  Q
    |||||||| |||||||||||||||||||||||| ||| ||||||||||||||| |||||||||| ||||||    
T  21306392 aggaagatgagctactcaaggcttgcattaacacgtacggtgaaggaaaatggaatttagttcctcagaga 21306322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0247 (Bit Score: 85; Significance: 3e-40; HSPs: 2)
Name: scaffold0247
Description:

Target: scaffold0247; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 301 - 453
Target Start/End: Original strand, 21868 - 22020
Alignment:
Q  301 acttggcaggattgaatagatgccgaaaaagttgtagattgaggtggttaaattatttaagccccaacatcaaaagggaaagctttgctgaggatgaagt 400  Q
    ||||| |||||||||||||||| |||||||||||||||||||||||| ||||||||||||  ||| ||||||| ||||| |  ||| || ||||||||||    
T  21868 acttgacaggattgaatagatgtcgaaaaagttgtagattgaggtgggtaaattatttaaatccctacatcaacagggagaatttttctaaggatgaagt 21967  T
Q  401 tgatctgatcctaaggttacacaaacttctagggaataggtaagcttccaagg 453  Q
    |||| |||| |||||||||||||| |||||||| |||||||||||||| ||||    
T  21968 tgatttgattctaaggttacacaaccttctaggcaataggtaagcttcaaagg 22020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0247; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 12 - 128
Target Start/End: Original strand, 19857 - 19972
Alignment:
Q  12 aggtgcctggacatatgaggaagataagctactcaaggcttgcattaacaagtatggtgaaggaaaatggcatttagttccacagagagcaggtattaac 111  Q
    |||||| ||||||||||| ||||| ||    |||||||||| ||||  |||| |||||| |||||||||||||||| ||||  | ||| |||||| |||     
T  19857 aggtgcatggacatatgaagaagacaactgtctcaaggcttacattctcaagcatggtgtaggaaaatggcatttaattcctgaaagaacaggta-taaa 19955  T
Q  112 gaatgttgcttattcta 128  Q
    ||||||| |||||||||    
T  19956 gaatgttccttattcta 19972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0193 (Bit Score: 61; Significance: 6e-26; HSPs: 2)
Name: scaffold0193
Description:

Target: scaffold0193; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 307 - 459
Target Start/End: Original strand, 24289 - 24441
Alignment:
Q  307 caggattgaatagatgccgaaaaagttgtagattgaggtggttaaattatttaagccccaacatcaaaagggaaagctttgctgaggatgaagttgatct 406  Q
    ||||||||||||| || ||||||||||||||||| || ||| |||||||||||| |||  ||||||| |||||   |||| || ||||||||| |||| |    
T  24289 caggattgaataggtgtcgaaaaagttgtagattaagatgggtaaattatttaaacccttacatcaacagggaggacttttctaaggatgaagctgattt 24388  T
Q  407 gatcctaaggttacacaaacttctagggaataggtaagcttccaaggcaaaat 459  Q
     ||  ||||||||||||| || ||||||||||||||||| |||||||| ||||    
T  24389 aattttaaggttacacaacctcctagggaataggtaagcgtccaaggccaaat 24441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0193; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 12 - 128
Target Start/End: Original strand, 23305 - 23420
Alignment:
Q  12 aggtgcctggacatatgaggaagataagctactcaaggcttgcattaacaagtatggtgaaggaaaatggcatttagttccacagagagcaggtattaac 111  Q
    |||||| ||||||||||| ||||| ||    |||||||||| ||||  |||| |||||| |||||||||||||||| ||||  | ||| |||||| ||||    
T  23305 aggtgcatggacatatgaagaagacaactgtctcaaggcttacattctcaagcatggtgtaggaaaatggcatttaattcctgaaagaacaggta-taac 23403  T
Q  112 gaatgttgcttattcta 128  Q
    ||||||| |||||||||    
T  23404 gaatgttccttattcta 23420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 307 - 427
Target Start/End: Original strand, 90071 - 90191
Alignment:
Q  307 caggattgaatagatgccgaaaaagttgtagattgaggtggttaaattatttaagccccaacatcaaaagggaaagctttgctgaggatgaagttgatct 406  Q
    ||||||| ||||| || ||||||||||||||||| |||||||| || ||||||| ||| | |||||| |  ||||| ||| ||||||||||||||||| |    
T  90071 caggattaaataggtgtcgaaaaagttgtagattaaggtggtttaactatttaaacccaaccatcaacaaagaaagattttctgaggatgaagttgatat 90170  T
Q  407 gatcctaaggttacacaaact 427  Q
    ||||||||||||||| |||||    
T  90171 gatcctaaggttacaaaaact 90191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 12 - 129
Target Start/End: Original strand, 88896 - 89013
Alignment:
Q  12 aggtgcctggacatatgaggaagataagctactcaaggcttgcattaacaagtatggtgaaggaaaatggcatttagttccacagagagcaggtattaac 111  Q
    |||| |||||||  |||| ||||||||  |||||||||| |||||||||||||||||| |||||||||||||| ||||||| |  |||||||||||  ||    
T  88896 aggtacctggacgaatgaagaagataacttactcaaggcatgcattaacaagtatggtcaaggaaaatggcatctagttcctcgaagagcaggtatatac 88995  T
Q  112 gaatgttgcttattctat 129  Q
    ||||  ||||||||||||    
T  88996 gaatcatgcttattctat 89013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University