View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14484_low_19 (Length: 508)

Name: NF14484_low_19
Description: NF14484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14484_low_19
NF14484_low_19
[»] scaffold0425 (3 HSPs)
scaffold0425 (273-440)||(5024-5178)
scaffold0425 (10-105)||(5172-5269)
scaffold0425 (441-492)||(4944-4995)
[»] chr3 (19 HSPs)
chr3 (273-439)||(6749843-6750009)
chr3 (273-439)||(6471731-6471901)
chr3 (330-440)||(6822345-6822458)
chr3 (348-440)||(6552074-6552166)
chr3 (330-425)||(6510689-6510784)
chr3 (330-439)||(7588832-7588942)
chr3 (1-105)||(7588687-7588793)
chr3 (10-105)||(6552202-6552299)
chr3 (273-426)||(6584658-6584808)
chr3 (377-474)||(6950432-6950527)
chr3 (273-462)||(6418174-6418340)
chr3 (441-492)||(6551994-6552045)
chr3 (43-111)||(6950340-6950408)
chr3 (356-439)||(8473529-8473614)
chr3 (328-439)||(8592705-8592813)
chr3 (1-105)||(6823087-6823193)
chr3 (3-105)||(8592588-8592691)
chr3 (273-319)||(6552162-6552208)
chr3 (1-74)||(6510825-6510898)
[»] scaffold0445 (2 HSPs)
scaffold0445 (273-426)||(8780-8931)
scaffold0445 (46-105)||(7804-7864)
[»] scaffold2089 (2 HSPs)
scaffold2089 (399-440)||(787-828)
scaffold2089 (276-320)||(879-923)
[»] chr4 (1 HSPs)
chr4 (128-169)||(6724973-6725014)


Alignment Details
Target: scaffold0425 (Bit Score: 79; Significance: 1e-36; HSPs: 3)
Name: scaffold0425
Description:

Target: scaffold0425; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 273 - 440
Target Start/End: Complemental strand, 5178 - 5024
Alignment:
Q  273 tataaaatatgttaaatatgaaatttgaataacaacggaaattaagagaaagcagtaagtaaaaaatgtgtttactaagatttaaagagagaagttactt 372  Q
    ||||||| || | ||||||||||||||| |||||||||||||||||||           ||||||||||||||||||||||||||||||| |||||||||    
T  5178 tataaaaaatatgaaatatgaaatttgagtaacaacggaaattaagag-----------taaaaaatgtgtttactaagatttaaagagataagttactt 5090  T
Q  373 gaaagtgtgtggaagaaagaaagtgaagaacttgaaagatcacccaaagaaagacttagaggaagcaa 440  Q
    |||||||||||||| ||| ||| |||||||||||||||||| |||||||  | |||||||||||||||    
T  5089 gaaagtgtgtggaacaaacaaactgaagaacttgaaagatctcccaaag--atacttagaggaagcaa 5024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0425; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 10 - 105
Target Start/End: Complemental strand, 5269 - 5172
Alignment:
Q  10 aacaaactaagatctttgtcagca-aagtaaaaactgagatctgccaaagaaagagagtatgaa-aatattagagaaagatttagaggaaatataaaa 105  Q
    |||||||| |||||||||||| || || || ||||||||||||||||| |||||||||||| || ||||||||||||||||||||||| |||||||||    
T  5269 aacaaactgagatctttgtcaccacaaatacaaactgagatctgccaaggaaagagagtataaataatattagagaaagatttagaggcaatataaaa 5172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0425; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 441 - 492
Target Start/End: Complemental strand, 4995 - 4944
Alignment:
Q  441 aactacaagatatgaatgatgagtttgatatggatagtaagtggaacaaaca 492  Q
    ||||||||||||| |||||||||||| |||||||||||||||||||||||||    
T  4995 aactacaagatatcaatgatgagtttcatatggatagtaagtggaacaaaca 4944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 79; Significance: 1e-36; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 273 - 439
Target Start/End: Original strand, 6749843 - 6750009
Alignment:
Q  273 tataaaatatgttaaatatgaaatttgaataacaacggaaattaagagaaagcagtaagtaaaaaatgtgtttacta--agatttaaagagagaagttac 370  Q
    |||||||||||| |||||||||||| || || ||||| |||||||||| ||||||| ||||||||||||||||||||  |||||||||||||||| ||||    
T  6749843 tataaaatatgtcaaatatgaaattagagtaccaacgaaaattaagaggaagcagtgagtaaaaaatgtgtttactaagagatttaaagagagaaattac 6749942  T
Q  371 ttgaaagtgtgtggaagaaagaaagtgaagaacttgaaagatcacccaaagaaagacttagaggaagca 439  Q
     ||||||||||| ||| ||| ||| |||||||||| | ||||| || ||||||  ||||||||||||||    
T  6749943 atgaaagtgtgtagaacaaacaaactgaagaactttagagatctcctaaagaa--acttagaggaagca 6750009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 273 - 439
Target Start/End: Complemental strand, 6471901 - 6471731
Alignment:
Q  273 tataaaatatgttaaatatgaaatttgaataacaacggaaattaagagaaagcagtaagtaaaaaatgtgtttacta--agatttaaagagagaagttac 370  Q
    |||||||||||| |||||||||||| || || ||||| |||||||||| ||||||| ||||||||||||||||||||  |||||||||||||||| ||||    
T  6471901 tataaaatatgtcaaatatgaaattagagtaccaacgaaaattaagaggaagcagtgagtaaaaaatgtgtttactaagagatttaaagagagaaattac 6471802  T
Q  371 ttgaaagtgtgtggaagaaagaaagtgaagaacttgaaagatcacccaaagaaagac--ttagaggaagca 439  Q
     ||||||||||| ||| ||| ||| |||||||||| | ||||| || || |||||||  ||||||||||||    
T  6471801 atgaaagtgtgtagaacaaacaaactgaagaactttagagatctcctaacgaaagacttttagaggaagca 6471731  T

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Target: chr3; HSP #3
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 330 - 440
Target Start/End: Complemental strand, 6822458 - 6822345
Alignment:
Q  330 agtaaaaaatgtgttt---actaagatttaaagagagaagttacttgaaagtgtgtggaagaaagaaagtgaagaacttgaaagatcacccaaagaaaga 426  Q
    ||||||| ||||||||   ||||||||| |||||||||| |||||||||||||  ||||||||| |||||||||||||||||||||||||||||||||||    
T  6822458 agtaaaatatgtgtttactactaagattcaaagagagaaattacttgaaagtgaatggaagaaacaaagtgaagaacttgaaagatcacccaaagaaaga 6822359  T
Q  427 cttagaggaagcaa 440  Q
    ||||||||||||||    
T  6822358 cttagaggaagcaa 6822345  T

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Target: chr3; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 348 - 440
Target Start/End: Complemental strand, 6552166 - 6552074
Alignment:
Q  348 taagatttaaagagagaagttacttgaaagtgtgtggaagaaagaaagtgaagaacttgaaagatcacccaaagaaagacttagaggaagcaa 440  Q
    ||||||||||||||| ||||||||||||||||||||||| ||| ||| |||||||||||||||||| |||||||||| |||||||||||||||    
T  6552166 taagatttaaagagataagttacttgaaagtgtgtggaacaaacaaactgaagaacttgaaagatctcccaaagaaatacttagaggaagcaa 6552074  T

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Target: chr3; HSP #5
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 330 - 425
Target Start/End: Complemental strand, 6510784 - 6510689
Alignment:
Q  330 agtaaaaaatgtgtttactaagatttaaagagagaagttacttgaaagtgtgtggaagaaagaaagtgaagaacttgaaagatcacccaaagaaag 425  Q
    ||||||||||||||||| |||||||||||||||||| ||||||||||||| |||||| ||| |||||||| ||||||||||||| |||||| ||||    
T  6510784 agtaaaaaatgtgtttagtaagatttaaagagagaaattacttgaaagtgagtggaacaaacaaagtgaaaaacttgaaagatctcccaaacaaag 6510689  T

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Target: chr3; HSP #6
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 330 - 439
Target Start/End: Original strand, 7588832 - 7588942
Alignment:
Q  330 agtaaaaaatgtgtttactaagatttaaagagagaagttacttgaaagtgtgtggaagaaagaaagtg-aagaacttgaaagatcacccaaagaaagact 428  Q
    ||||||||| |||| |||||| |||||||||||||| ||||||||||||| |||||| || ||||||| |||||||||||||||| | ||| ||||||||    
T  7588832 agtaaaaaacgtgtgtactaatatttaaagagagaaattacttgaaagtgagtggaacaatgaaagtgaaagaacttgaaagatctctcaaggaaagact 7588931  T
Q  429 tagaggaagca 439  Q
    |||||||||||    
T  7588932 tagaggaagca 7588942  T

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Target: chr3; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 7588687 - 7588793
Alignment:
Q  1 gtgagaacaaacaaactaagatctttgtcagcaaagtaa----aaactgagatctgccaaagaaagagagtatgaaaatattagagaaagatttagagga 96  Q
    ||||||||||||||||||||||||||||||  ||| |||    ||||||||||||||||| |||||||||||| |||| |||||||||||||||||||||    
T  7588687 gtgagaacaaacaaactaagatctttgtcaaaaaa-taacactaaactgagatctgccaaggaaagagagtataaaaa-attagagaaagatttagagga 7588784  T
Q  97 aatataaaa 105  Q
    |||||||||    
T  7588785 aatataaaa 7588793  T

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Target: chr3; HSP #8
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 10 - 105
Target Start/End: Complemental strand, 6552299 - 6552202
Alignment:
Q  10 aacaaactaagatctttgtcagca-aagtaaaaactgagatctgccaaagaaagagagtatgaa-aatattagagaaagatttagaggaaatataaaa 105  Q
    |||||||| ||||||||||||||| || || ||||||||||||||||| |||||||||||| || ||||||||||||||||||||||| |||||||||    
T  6552299 aacaaactgagatctttgtcagcacaaatacaaactgagatctgccaaggaaagagagtataaataatattagagaaagatttagaggcaatataaaa 6552202  T

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Target: chr3; HSP #9
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 273 - 426
Target Start/End: Complemental strand, 6584808 - 6584658
Alignment:
Q  273 tataaaatatgttaaatatgaaatttgaataacaacggaaattaagagaaagcagtaagtaaaaaatgtgtttactaagatttaaagagagaagttactt 372  Q
    |||||||||||  ||||| ||||||||| || ||| | |||||||||| ||||||| ||||||||| ||||||| ||   |||| |||||||| ||||||    
T  6584808 tataaaatatgccaaatacgaaatttgagtaccaaagtaaattaagaggaagcagtgagtaaaaaacgtgtttagta---tttagagagagaaattactt 6584712  T
Q  373 gaaagtgtgtggaagaaagaaagtgaagaacttgaaagatcacccaaagaaaga 426  Q
    |||||||||||||| ||| |||  |||||||| |||| ||| |||||| |||||    
T  6584711 gaaagtgtgtggaacaaacaaaccgaagaactcgaaaaatctcccaaaaaaaga 6584658  T

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Target: chr3; HSP #10
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 377 - 474
Target Start/End: Original strand, 6950432 - 6950527
Alignment:
Q  377 gtgtgtggaagaaagaaagtgaagaacttgaaagatcacccaaagaaagacttagaggaagcaaaactacaagatatgaatgatg-agtttgatatgga 474  Q
    |||||||||| |||||||||||||||||||||||||| ||||||||| ||||||||||||||   || ||||||||| ||||||| ||||| |||||||    
T  6950432 gtgtgtggaacaaagaaagtgaagaacttgaaagatctcccaaagaaggacttagaggaagc---acaacaagatatcaatgatgaagtttcatatgga 6950527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 273 - 462
Target Start/End: Complemental strand, 6418340 - 6418174
Alignment:
Q  273 tataaaatatgttaaatatgaaatttgaataacaacggaaattaagagaaagcagtaagtaaaaaatgtgtttactaagatttaaagagagaagttactt 372  Q
    |||||||||||| ||||||||||||||| |||||| |||||||||||| ||            |||||||||||||||||| ||||||||||| ||||||    
T  6418340 tataaaatatgtgaaatatgaaatttgagtaacaatggaaattaagagtaa------------aaatgtgtttactaagatctaaagagagaaattactt 6418253  T
Q  373 gaaagtgtgtggaagaaagaaagtgaagaacttgaaagatcacccaaagaaagacttagaggaagcaaaactacaagatatgaatgatga 462  Q
     ||||||||||||| ||| |        ||||| | ||||| ||||||||||||||||||||||||   || ||||||||| ||||||||    
T  6418252 taaagtgtgtggaacaaaca--------aacttcagagatctcccaaagaaagacttagaggaagc---acaacaagatatcaatgatga 6418174  T

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Target: chr3; HSP #12
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 441 - 492
Target Start/End: Complemental strand, 6552045 - 6551994
Alignment:
Q  441 aactacaagatatgaatgatgagtttgatatggatagtaagtggaacaaaca 492  Q
    ||||||||||||| |||||||||||| |||||||||||||||||||||||||    
T  6552045 aactacaagatatcaatgatgagtttcatatggatagtaagtggaacaaaca 6551994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 43 - 111
Target Start/End: Original strand, 6950340 - 6950408
Alignment:
Q  43 ctgagatctgccaaagaaagagagtatgaaaatattagagaaagatttagaggaaatataaaacatgtt 111  Q
    |||||||||||||| ||||||| |||| |||| |||||||||||||||||| | ||||||||| |||||    
T  6950340 ctgagatctgccaaggaaagagggtataaaaagattagagaaagatttagaagcaatataaaatatgtt 6950408  T

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Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 356 - 439
Target Start/End: Original strand, 8473529 - 8473614
Alignment:
Q  356 aaagagagaagttacttgaaagtgtgtg--gaagaaagaaagtgaagaacttgaaagatcacccaaagaaagacttagaggaagca 439  Q
    |||||||||| |||||||||||||||||  ||| ||| |||  ||||||||| | ||||| ||||| |||||||||||||||||||    
T  8473529 aaagagagaaattacttgaaagtgtgtgtggaacaaacaaaccgaagaactttagagatctcccaaggaaagacttagaggaagca 8473614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 328 - 439
Target Start/End: Original strand, 8592705 - 8592813
Alignment:
Q  328 taagtaaaaaatgtgtttactaagatttaaagagagaagttacttgaaagtgtgtggaagaaagaaagtgaagaacttgaaagatcacccaaagaaagac 427  Q
    ||||||||||||||||| ||||   || | ||||||||||||||||| ||| ||||||| ||| ||| | || |||| || ||||| |||||||||||||    
T  8592705 taagtaaaaaatgtgttcacta---ttcagagagagaagttacttgagagtatgtggaacaaacaaactcaataactagacagatctcccaaagaaagac 8592801  T
Q  428 ttagaggaagca 439  Q
    |||  |||||||    
T  8592802 ttaatggaagca 8592813  T

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Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 6823193 - 6823087
Alignment:
Q  1 gtgagaacaaacaaactaagatctttgtcagcaaagtaaaaactgagatctgccaaagaaagagagtat--gaaaatattagagaaagatttagaggaaa 98  Q
    |||||||||||||| || ||||||||||| | |||  | |||||||||||||| ||  || ||||||||   |||| | |||||||||||||||||| ||    
T  6823193 gtgagaacaaacaatctgagatctttgtcggaaaaacacaaactgagatctgctaagtaatgagagtataaaaaaaaaatagagaaagatttagaggcaa 6823094  T
Q  99 tataaaa 105  Q
    |||||||    
T  6823093 tataaaa 6823087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 3 - 105
Target Start/End: Original strand, 8592588 - 8592691
Alignment:
Q  3 gagaacaaacaaactaagatctttgtcagcaaagtaaaaactgagatctgccaaagaaagagagtatgaaaata---ttagagaaagatttagaggaaat 99  Q
    ||||||| ||||| | ||||||||||||| |||  | ||||||| |||||||||   |||||||||| |||| |   ||||||||||||||||||| |||    
T  8592588 gagaacacacaaattgagatctttgtcagaaaaacacaaactgatatctgccaag--aagagagtataaaaaaaaaattagagaaagatttagaggcaat 8592685  T
Q  100 ataaaa 105  Q
    ||||||    
T  8592686 ataaaa 8592691  T

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Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 273 - 319
Target Start/End: Complemental strand, 6552208 - 6552162
Alignment:
Q  273 tataaaatatgttaaatatgaaatttgaataacaacggaaattaaga 319  Q
    ||||||| || | ||||||||||||||| ||||||||||||||||||    
T  6552208 tataaaaaatatgaaatatgaaatttgagtaacaacggaaattaaga 6552162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 6510898 - 6510825
Alignment:
Q  1 gtgagaacaaacaaactaagatctttgtcagcaaagtaaaaactgagatctgccaaagaaagagagtatgaaaa 74  Q
    ||||||| ||||||||| ||||||||||||  |||  | ||||||||||||||||| |||| | ||||| ||||    
T  6510898 gtgagaagaaacaaactgagatctttgtcacaaaaacacaaactgagatctgccaaggaaataaagtataaaaa 6510825  T

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Target: scaffold0445 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: scaffold0445
Description:

Target: scaffold0445; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 273 - 426
Target Start/End: Original strand, 8780 - 8931
Alignment:
Q  273 tataaaatatgttaaatatgaaatttgaataacaacggaaattaagagaaagcagtaagtaaaaaatgtgtttactaagatttaaagagagaagttactt 372  Q
    ||||||| |||| ||||||||||||||| |||||||||||||||||||           ||||| ||||||||||| |||||||||||||||| ||||||    
T  8780 tataaaaaatgtgaaatatgaaatttgagtaacaacggaaattaagag-----------taaaatatgtgtttactgagatttaaagagagaaattactt 8868  T
Q  373 gaaagtgtg---------tggaagaaagaaagtgaagaacttgaaagatcacccaaagaaaga 426  Q
    ||||||| |         |||||||||||||||||||||||| ||||||| ||||||||||||    
T  8869 gaaagtgagtgactggaatggaagaaagaaagtgaagaacttaaaagatctcccaaagaaaga 8931  T

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Target: scaffold0445; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 46 - 105
Target Start/End: Original strand, 7804 - 7864
Alignment:
Q  46 agatctgccaaagaaagagagtatgaaaatat-tagagaaagatttagaggaaatataaaa 105  Q
    |||||||||||  ||||||||||| |||| |  |||| |||||||||||||||||||||||    
T  7804 agatctgccaagtaaagagagtataaaaaaaaatagacaaagatttagaggaaatataaaa 7864  T

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Target: scaffold2089 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: scaffold2089
Description:

Target: scaffold2089; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 399 - 440
Target Start/End: Complemental strand, 828 - 787
Alignment:
Q  399 agaacttgaaagatcacccaaagaaagacttagaggaagcaa 440  Q
    |||||||||||||||   ||||||||||||||||||||||||    
T  828 agaacttgaaagatctggcaaagaaagacttagaggaagcaa 787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2089; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 276 - 320
Target Start/End: Complemental strand, 923 - 879
Alignment:
Q  276 aaaatatgttaaatatgaaatttgaataacaacggaaattaagag 320  Q
    |||| |||| ||||||||||||||| |||||||| ||||||||||    
T  923 aaaaaatgtgaaatatgaaatttgagtaacaacgtaaattaagag 879  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 128 - 169
Target Start/End: Complemental strand, 6725014 - 6724973
Alignment:
Q  128 tactccctccaatcttgtatataaaaaagattcttttttagg 169  Q
    |||||||||| ||||  |||||||||||||||||||||||||    
T  6725014 tactccctccgatctcatatataaaaaagattcttttttagg 6724973  T

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