View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14484_low_2 (Length: 821)
Name: NF14484_low_2
Description: NF14484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14484_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 328; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 16 - 522
Target Start/End: Complemental strand, 22927080 - 22926597
Alignment:
| Q |
16 |
cccaccaattaaaaatcaaataaggctgccatgttttagtcttaataattcgtttggttgaaattaagtcattggtatccatgggaaaattattttaagt |
115 |
Q |
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| T |
22927080 |
cccaccaattaaaaatccaataaggctgccatgttttagtcttaataattcgtttggttgaaattaagtcattggtatccatgggaaaattattttttta |
22926981 |
T |
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| Q |
116 |
nnnnnnngtagtgaagaaattgtataaatattcttcaatttctatttgtgcagtatatgttgttttcttgaagatttcttaatattttttggtcaactga |
215 |
Q |
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| T |
22926980 |
aaaaaaagtagtgaagaaattgtataaatattcttcaatttctatttgtgcagtatatgttgttttcttgaagatttcttaatattttttggtcaactga |
22926881 |
T |
|
| Q |
216 |
ataagacatccatataaatgttagattagcccccnnnnnnntgttagattagcatataattgttggaagttggaatctttctttatctaaggtcttagat |
315 |
Q |
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| T |
22926880 |
ataaaacatccatataaatgttagattagccccc-------------------aaataaatgttggaagttggaatctttctttatctaaggtcttagat |
22926800 |
T |
|
| Q |
316 |
tagcatgacaataatcgtctcagctatgtttgtttggaaaacatcagtcagtgagctataagaatatatttgaaataaaaacatcaagttataaaaatcc |
415 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
22926799 |
tagcatgacaataatcgtctcagctatgcttgtttggaaaacatcagt----gagctataagaatatatttgaaataaaaacatcaagttataacaatcc |
22926704 |
T |
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| Q |
416 |
ttaagtgttatgaaagaaagtgaagagatgatattttattattctcttgtgatcatttttctnnnnnnnnntacaatgatacgagtcaattacatgagtc |
515 |
Q |
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| T |
22926703 |
ataagtgttatgaaagaaagagaagagatgatattttattattctcttgtgatcatttttctaaaaaaaaatacaatgatacgagtcaattacatgggtc |
22926604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 763 - 815
Target Start/End: Complemental strand, 22926358 - 22926306
Alignment:
| Q |
763 |
ctcaattagtctagtgactagaattcacttttaagatgaataagtagggtgtt |
815 |
Q |
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| T |
22926358 |
ctcaattagtctagtgactagaattcacttttaagatgaataagcagggtgtt |
22926306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 624 - 658
Target Start/End: Complemental strand, 22926496 - 22926462
Alignment:
| Q |
624 |
caatgagtatgtagtgaaaacaatttttaaaagag |
658 |
Q |
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| T |
22926496 |
caatgagtatgtagtgaaaacaatttttaaaagag |
22926462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 769 - 814
Target Start/End: Complemental strand, 37928131 - 37928085
Alignment:
| Q |
769 |
tagtctagtgactagaattcac-ttttaagatgaataagtagggtgt |
814 |
Q |
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| T |
37928131 |
tagtctagtgactagaattcactttttaaagtgaataagtagggtgt |
37928085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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