View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14484_low_23 (Length: 487)
Name: NF14484_low_23
Description: NF14484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14484_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 17 - 220
Target Start/End: Original strand, 21031396 - 21031599
Alignment:
| Q |
17 |
gttgaatggaatcattatcaagtgagagtgtgttgtagttgttatgattttcttgttgaattgtgtgagaagaatttgtaatatcagaaagtctttttcg |
116 |
Q |
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| T |
21031396 |
gttgaatggaatcattatcaagtgagagtgtgttgtagttgttatgattttcttgttgaattgtctgagaagaatttgtaatatcagaaagtctttttcg |
21031495 |
T |
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| Q |
117 |
cattaagtttccaatggatttcttcgccattttctgattctccgtcggcatgttagttagtaccgttgtaactgtaaattcaactgtttgtttcaacaga |
216 |
Q |
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| T |
21031496 |
cattaagtttccgatcgatttcttcgccattttctgattctccgttggcatgttagttagtaccgttgtaactgtaaattcaactgtttgtttcaacaga |
21031595 |
T |
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| Q |
217 |
gtgc |
220 |
Q |
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|||| |
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| T |
21031596 |
gtgc |
21031599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 153; E-Value: 7e-81
Query Start/End: Original strand, 288 - 481
Target Start/End: Original strand, 21031666 - 21031858
Alignment:
| Q |
288 |
taaccgttgtgttgttcgaagctaaatttcaaatatttcagtgtctttttatccgatacaacggttcaaattaaatgaaattaaaaaagtgattccttaa |
387 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21031666 |
taaccgttgtgttgttcgaagctaaatttcaaatatttcagtgtctttttatccgatacaacggttcaaattaaatgaaattaaaaaagtgattccttaa |
21031765 |
T |
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| Q |
388 |
ttttcacnnnnnnnngcttttcttcatattcgtcaaaaatatataaaaacttttccttatgacaaattttcagccccattttgagtattatcta |
481 |
Q |
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| T |
21031766 |
ttttcac-tttttttgcttttcttcatattcgtcaaaaatatataaaaacttttctttataacaaattttcagccccattttgaatattatcta |
21031858 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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