View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14484_low_25 (Length: 459)
Name: NF14484_low_25
Description: NF14484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14484_low_25 |
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Alignment Details
Target: chr5 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 1 - 441
Target Start/End: Original strand, 8793859 - 8794299
Alignment:
| Q |
1 |
ctttgcaagagcgatataatggttggttgttcaggtgtttgacctttcgttcattcactggacatttgaattgtgaagtagctacttgagtaatttcttg |
100 |
Q |
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|||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8793859 |
ctttgcaagagccatataatggttgtttgttcaggtgtttgacctttcgttcattcactggacatttgaattgtgaagtagctacttgagtaatttcttg |
8793958 |
T |
|
| Q |
101 |
tcggtcggtgcaacaaacttggtttcttgtagcttgggaatgcttcatttataatttaattaaacagcttaattttttattgggtatgaacaggaattgc |
200 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
8793959 |
tcggtcggtgcaacaaacttggtttcttgtagcttgggaatgcttcatttataatttaattaatcagcttaattttttattgggtatgaacaggaattgc |
8794058 |
T |
|
| Q |
201 |
attatgaatctctgttttgtcctggcaatcttacgtgctactaatacttcctcaatttctaccatgcatgctagttcattacattcatgtatgttttttc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| |
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| T |
8794059 |
attatgaatctctgttttgtcctggcaatcttacgtactactagtacttcctcaatttctatcatgtatgctagttcattacattcatgtatgttttttc |
8794158 |
T |
|
| Q |
301 |
attgcatcccttccctaccagctaaataattgataccgacatgattttttatttgattagtttaattcctctttaattacaaattcaggttataagatta |
400 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8794159 |
attgcatcccttccctaccagctaaataattgataccgacatgattttttatttgattagtttaattcctctttaattacaaattcaggttataagatta |
8794258 |
T |
|
| Q |
401 |
atgatgttacttgagnnnnnnnaataaattcaggtcagaat |
441 |
Q |
| |
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||||||||||||||| ||||||||||||||||||| |
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| T |
8794259 |
atgatgttacttgagttttattaataaattcaggtcagaat |
8794299 |
T |
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