View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14484_low_27 (Length: 450)
Name: NF14484_low_27
Description: NF14484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14484_low_27 |
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Alignment Details
Target: chr5 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 7 - 436
Target Start/End: Complemental strand, 8686140 - 8685730
Alignment:
| Q |
7 |
cctaaatgaatatttctaaaactggaactcaaattctgtcattttaacaactctcgcaaaaatgttgaacacagggtacatatattaaaagaaaaatgtc |
106 |
Q |
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| T |
8686140 |
cctaaatgaatatttgtaaaaatggaactcaaattctgtcattttaccaaccctcgcaaaaatgttgagcgcagggtacatatattaaaagaaaaatgtc |
8686041 |
T |
|
| Q |
107 |
gttatgcattacttgcaaacatatccaatgcaaccatgttaccaaaattacaaaagacaaacttttttgacaatgaaaaatgagttgagttgaagatata |
206 |
Q |
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| T |
8686040 |
gttatgcattacttgcaaacatatccaataaaaccatgttaccaaaattacaaaagacaaacttttttgacaatgaaaaatgagttgagttgaagatata |
8685941 |
T |
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| Q |
207 |
ataaaaggtgttatgatctcttaaagggctgggaaaagctcattgagtctgcaaggcaaagaatagaattcatcattcctaacatctccattatacaaag |
306 |
Q |
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| T |
8685940 |
at-------------------taaagggctgggaaaagctcattgagtctgcaaggcaaagaatagaattcatcattcctaacatctccattatacaaag |
8685860 |
T |
|
| Q |
307 |
taaacttctcccaccattttaaaccactgtcatttttagctgcatcatcttcgcgagtaagtgtgagatccaaaattaatgcaaccaatgcagcaaccgt |
406 |
Q |
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| T |
8685859 |
taaacttctcccaccattttaaaccactgtcatttttagctgcatcatcttcgcgagtaagtgtgagatccaaaattaatgcaaccaatgcagcaaccgt |
8685760 |
T |
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| Q |
407 |
tatatgtgacatgaatatcacagttataat |
436 |
Q |
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| T |
8685759 |
tatatgtgacatgaagatcacacttataat |
8685730 |
T |
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Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 309 - 400
Target Start/End: Complemental strand, 47581969 - 47581878
Alignment:
| Q |
309 |
aacttctcccaccattttaaaccactgtcatttttagctgcatcatcttcgcgagtaagtgtgagatccaaaattaatgcaaccaatgcagc |
400 |
Q |
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||||||||||||||||| |||||| |||||| |||||||||||||| || || ||||||| ||||||||| || |||||||| ||||| |
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| T |
47581969 |
aacttctcccaccatttcaaaccattgtcatcacgggctgcatcatcttcacgggtgagtgtgaaatccaaaatgaaagcaaccaaggcagc |
47581878 |
T |
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